RPSBLAST alignment for GI: 254780173 and conserved domain: cd03271
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
Score = 70.6 bits (173), Expect = 4e-13
Identities = 64/267 (23%), Positives = 114/267 (42%), Gaps = 75/267 (28%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTLIRCI--------NHIEKHQAGE--------- 73
+ L++I++++ G + G SGSGKS+LI H++K Q G
Sbjct: 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEH 68
Query: 74 ----IIINGIPLN--------------DDIRNIH-EVRRDVGMVFQHFNL---FSNLSVL 111
I+I+ P+ D+IR + EV + G + L + S+
Sbjct: 69 IDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCK--GKRYNRETLEVRYKGKSIA 126
Query: 112 ENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSH-------------RSSSLLSGGES 158
+ V M ++A E + N KIA K + ++ LSGGE+
Sbjct: 127 D--------VLDMTVEEALE---FFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEA 175
Query: 159 QRAAIARSLCMQ---PKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFA 215
QR +A+ L + + + DEPT+ L VK++L+++ L ++G T+V + H +
Sbjct: 176 QRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235
Query: 216 RQVADRVVFMDQ------GQIVEQNSP 236
+ AD ++ + GQ+V +P
Sbjct: 236 K-CADWIIDLGPEGGDGGGQVVASGTP 261