BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780173|ref|YP_003064586.1| ABC transporter related
protein [Candidatus Liberibacter asiaticus str. psy62]
(257 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 535 bits (1377), Expect = e-154, Method: Compositional matrix adjust.
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI
Sbjct: 1 MKNTPINSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
Query: 61 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120
RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW
Sbjct: 61 RCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIW 120
Query: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180
VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT
Sbjct: 121 VRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPT 180
Query: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF
Sbjct: 181 SALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFF 240
Query: 241 NNPQHERTQAFLSQIIY 257
NNPQHERTQAFLSQIIY
Sbjct: 241 NNPQHERTQAFLSQIIY 257
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 140 bits (354), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 129/237 (54%), Gaps = 12/237 (5%)
Query: 26 WYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ-----AGEIIINGIP 80
YG AL DINL + + + GPSG GKST +RC+N + + GEII++G
Sbjct: 15 CYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKN 74
Query: 81 LNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP-IWVRKMPKKDAEELAMHYLNK 139
+ ++ +R VGMVFQ N F S+ +N GP I K D +++ L K
Sbjct: 75 IYQSSVDVVRLRARVGMVFQRPNPFPK-SIYDNVAYGPRIHGLGNNKADIDQIVEMSLKK 133
Query: 140 V----KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
++ D+ +SLLSGG+ QR IAR+L + P+++L DEP SALDP V +++
Sbjct: 134 ASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELI 193
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFL 252
EL E +T+V VTH M A +V+ R G +VE++ ++ F P +RTQ ++
Sbjct: 194 HEL-RESLTIVIVTHSMQQAARVSQRAAMFHMGHLVEEDDTDKMFTAPSDQRTQDYI 249
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 114 bits (286), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 8/232 (3%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+++ L Y N D +N + ER++I GPSG+GKSTL+ + + G I +N
Sbjct: 2 IKLDHLIYCYDNLKMQFDFQVN--KAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLN 59
Query: 78 GIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYL 137
G + R+ +R + ++FQ NLFS+L+V +N LG ++ ++ L
Sbjct: 60 G---QNHTRS-SPSKRPLSILFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVK-QML 114
Query: 138 NKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIE 197
KV + D +R S +SGG+ QR A+AR L Q I+L DEP + DP + E+L ++ +
Sbjct: 115 EKVFLEDFFNRFPSQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQ 174
Query: 198 LAEE-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERT 248
+ +E +T++ ++H + + Q+A R + + GQIV P+ N E T
Sbjct: 175 VCDERQLTLLMISHNLEDSMQIATRFIVIAGGQIVYDGDPDRLMNGLIPEST 226
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 106 bits (265), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
L K GN L +N NV GE V + G SGSGKSTL+R I + +G+++ G
Sbjct: 23 LKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLFKG---- 78
Query: 83 DDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKI 142
+ I + +D+ +VFQ F LF L+VLEN LG + + + K++ + A+ ++ + +
Sbjct: 79 ---KKIKDPPKDISVVFQTFALFPWLTVLENVELG-LKAKGIDKEERRKRALSAIDLIGL 134
Query: 143 ADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEG 202
++ +SGG QR AR+ + P ++L DEP SALD + + +I+L EG
Sbjct: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDLWIEG 194
Query: 203 M----TMVCVTHEMGFARQVADRVVFMDQ--GQIVEQ 233
+M+ VTH + A + DRV+ G+I E+
Sbjct: 195 RLPIESMLMVTHNIEEAVLMCDRVLVFSSNPGRIAEE 231
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 105 bits (263), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 124/236 (52%), Gaps = 8/236 (3%)
Query: 27 YGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN---GI--PL 81
YG A+ NL V +GE +++ G SG+GKSTL+R IN + GE++++ G P
Sbjct: 39 YGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPY 98
Query: 82 NDDIRNIHEVR-RDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV 140
D + ++R V MVFQ F L +V N LG ++ +P + + +L V
Sbjct: 99 AADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFL-DIPDVERKSRVAEHLEIV 157
Query: 141 KIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAE 200
+ + ++LSGG QR AR+ I+L DEP S+LDP + + D ++ L
Sbjct: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
Query: 201 E-GMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQI 255
+ T+V V+H++ A ++ +R+ M+ G+I++ +P+E +P + F+ ++
Sbjct: 218 KLKKTIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEIILHPANCYVSEFIQKL 273
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 100 bits (250), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIII-NGI--PLNDDIR 86
F L +++L++ +GE V + PSG+GKST++ +E G +II N + L+DD +
Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKK 82
Query: 87 NIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKS 146
+ + +G V+Q L + SV+EN P + + K A + AM L+ + ++ +
Sbjct: 83 SFLRCSK-IGFVYQEHRLLMDFSVIENIIF-PQIIAGINHKTAYQRAMDLLSYMDMSQYA 140
Query: 147 HRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIEL-AEEGMTM 205
+R SS +SGGE QR AI R++ +P I+L DEPT LD + ++V I+ L G+
Sbjct: 141 NRRSSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAA 200
Query: 206 VCVTHEMGFARQVADRVVFMDQGQIVE 232
+ TH A Q+ DR + + G I +
Sbjct: 201 LIATHNHDLASQM-DRQITIRDGMIAD 226
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 91.7 bits (226), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%)
Query: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
L K Y + + ++ ++L V GE V + GP+G+GK+T + + +G I I+G
Sbjct: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---- 86
Query: 83 DDIRNIHEVRRD-VGMVF--QHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNK 139
+DI + RR +G+ + Q ++F L+V EN L + V + KK E L +
Sbjct: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKE 145
Query: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
I H + LLSGG+ +R IARSL P +L DEP + +DP + ++ ++ +LA
Sbjct: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
Query: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
G+ ++ H + + DR + G ++ + +E +N R
Sbjct: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 88.2 bits (217), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 113/210 (53%), Gaps = 9/210 (4%)
Query: 39 NVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN-DDIRNIHEVRRDVGM 97
++LRGE + + G SG+GKS L+R I + +GE+ + G LN + +G+
Sbjct: 35 DILRGEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGV 94
Query: 98 VFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSL----L 153
+FQH LFS+++V EN ++ PI D E +H K+ I +++L L
Sbjct: 95 LFQHGALFSSMTVQENISM-PIKEHLNLPADLIEHIVH--TKIAIVGLPPETANLMPFQL 151
Query: 154 SGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-GMTMVCVTHEM 212
SGG +R ++AR+L + P ++ DEPTS LDP +E ++I+L G+++ +TH++
Sbjct: 152 SGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHDL 211
Query: 213 GFARQVADRVVFMDQGQIVEQNSPEEFFNN 242
+RV + + I+++ + + ++
Sbjct: 212 NNLISTCNRVAVIQKKGIMKEGTISDIVDS 241
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 76.6 bits (187), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 32 ALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEV 91
L INL G+ + GPSGSGKST+I + + +G I I+GI + D +
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDI--TFSSL 425
Query: 92 RRDVGMVFQHFNLFSNLSVLENCTLG-PIWVRKMPKKDAEELAMH-YLNKVKIADKSH-- 147
R + V Q LFSN +V N +G P+ + + A+ H ++ + ++
Sbjct: 426 RERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVG 484
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPE---MVKEVLDIMIELAEEGMT 204
+ S LSGG+ QR AIAR++ I++ DE TSALD +V++ L ++ +G T
Sbjct: 485 ENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLM----QGRT 540
Query: 205 MVCVTHEMGFARQVADRVVFMDQGQIVEQN 234
+ + H + + AD ++F++ G++ E
Sbjct: 541 TIVIAHRISTIIE-ADHIIFIEDGKVSESG 569
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 70.5 bits (171), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 33/225 (14%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNI--HE 90
+ I+ + ++ + G SG GKST+ + + + + G I I+G DI+ I
Sbjct: 373 FKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDG----QDIKKITKES 428
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADKSHRSS 150
+R+ +G++ Q LF++ ++ N G P +EL V++A
Sbjct: 429 LRQTIGIIPQDTILFND-TLRYNILYGN------PNASDQELCA----AVEVAQLKSFIM 477
Query: 151 SL--------------LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMI 196
L LSGGE QR +IAR++ P I++FDE TS+LD + + +
Sbjct: 478 KLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALA 537
Query: 197 ELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFN 241
L++ T+V + H + AD ++ DQG +VE S E +
Sbjct: 538 TLSKNRTTLV-IAHRLSTITD-ADNIIVFDQGTVVESGSHENLIS 580
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 70.1 bits (170), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%)
Query: 30 FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAG------EIIINGIPLND 83
+ L+DIN + E V + GP+GSGKST+ + I I K G ++I+ +P
Sbjct: 23 YKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82
Query: 84 DIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIA 143
I N LS++ TL MP + + + L++V +
Sbjct: 83 TIENTLP-----------------LSLMRFMTL------SMP--SSRDDVLQILDRVNLI 117
Query: 144 DKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE-G 202
K +R+ LSGGE QRA +A++L +P +++ DEP +D + +++ + + G
Sbjct: 118 GKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTG 177
Query: 203 MTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
++ ++H + D V+ ++ +I Q P+ +N ++ R
Sbjct: 178 CGILLISHNLHMVMASTDTVICLNN-RICYQGPPQTIKDNAEYIR 221
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 69.3 bits (168), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 15/249 (6%)
Query: 3 NTPINSKNPPKNNFAV----EIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKST 58
++PI+S+ P + F+ L+++N V GE + + G SG+GK++
Sbjct: 272 SSPISSRTFPSPVLGSVSFRSVSFVYPGKSKRSILKNVNFTVQPGETIALVGDSGAGKTS 331
Query: 59 LIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGP 118
+ I +G + I GI L + ++ E+RR + V QH + + SV +N +G
Sbjct: 332 IFSLILRFYDPCSGSVEIEGIDLR--LLSLEEIRRFIAWVPQHPIMIAA-SVYDNIAIGC 388
Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRS-----SSLLSGGESQRAAIARSLCMQPKI 173
+ ++A LA + + + + + + LS G+ QR AIAR++ I
Sbjct: 389 PHATRKEIQNAAMLAQAH-EFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPI 447
Query: 174 MLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQ 233
+L DE SALD E +++ ++ E G T + +H + A Q AD V + IVE+
Sbjct: 448 LLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIFASHRLS-AIQDADMVFVLHDQVIVEK 505
Query: 234 NSPEEFFNN 242
EE
Sbjct: 506 GVHEELLKK 514
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 61.2 bits (147), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 109/250 (43%), Gaps = 36/250 (14%)
Query: 17 AVEIKFLNKWYGN-FHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
+E+K ++ Y N + AL D+NL + + G +G+GKSTL + I + G I
Sbjct: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
Query: 75 -------------IINGIPLNDDIRNIHEVR-RDVGMV--FQHFNLFSNLSVLENCTLGP 118
+I IP + I + DV M+ ++H N
Sbjct: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN--------------- 115
Query: 119 IWVRKMPKKDAEELAMHYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDE 178
W R++ + + L V ++ R LS G+ +R +AR+L + ++++ DE
Sbjct: 116 -W-RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDE 173
Query: 179 PTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEE 238
P +A+D + +E++ ++ L E + ++ TH + DR +F+ + ++ +
Sbjct: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232
Query: 239 FFNNPQHERT 248
FN ++T
Sbjct: 233 IFNEDNIQKT 242
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 60.5 bits (145), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
+E + K Y + ++D +L + GE + I GP+G+GK+TL++ + K G I
Sbjct: 283 LVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFIT 342
Query: 76 INGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMH 135
+ N I I + R D+ +L S L+ +L M + ++ +A +
Sbjct: 343 LGT---NLKIATIDQKREDID---PDKSLASYLTGSSGDSL-------MVRGESRHVAGY 389
Query: 136 YLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIM 195
+ + D++H LSGGE RA +AR L ++ DEPT+ LD E + + +
Sbjct: 390 IKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETLDFLERTI 449
Query: 196 IELAEEGMTMVCVTHEMGFARQVADRVV 223
+L +G T++ V+H+ F DR V
Sbjct: 450 TQL--QG-TILIVSHDRDF----LDRTV 470
Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 97/203 (47%), Gaps = 27/203 (13%)
Query: 28 GNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
G L+D+ L++ ER+ + G +GSGKSTL++ I + Q+G + +
Sbjct: 16 GGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL----------- 64
Query: 88 IHEVRRDVGMVFQHFNL--FSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKVKIADK 145
H R +G + Q+ +L FS +S + T+ +A L K + ++
Sbjct: 65 -HSSSR-LGYLEQNPDLSHFSTISQYIDDTIKDTI-------EAPYSPYSLLKKFNLREQ 115
Query: 146 SHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
+ LS G+++ A+ + L +P I++ DEPT+ LD + + + EL + +
Sbjct: 116 DRIEN--LSVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSAL 170
Query: 206 VCVTHEMGFARQVADRVVFMDQG 228
+ V+H+ F ++ V++D+G
Sbjct: 171 IFVSHDRRFLETLSTTTVWLDRG 193
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 48/244 (19%)
Query: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74
F + L+K +G+ L DINL+ ++ I GP+G+GKST++R + I+K GE
Sbjct: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64
Query: 75 IINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
+ G VG + Q L + +V EN G + + + EL M
Sbjct: 65 LATGFT--------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR-YNELMM 109
Query: 135 HYLNK-----------------------VKIADKSHRSS------SLLSGGESQRAAIAR 165
+Y K V++A +S + LSGGE +R A+ +
Sbjct: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169
Query: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225
L P ++L DEPT+ LD E + + + E + ++ VTH+ F V + ++ +
Sbjct: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVTHDRYFLDNVTNWILEV 226
Query: 226 DQGQ 229
D+G+
Sbjct: 227 DRGK 230
Score = 49.3 bits (116), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 29/240 (12%)
Query: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77
+E K ++K Y + + +++ + G V + GP+G+GK+TL R + E +G I +
Sbjct: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377
Query: 78 G---IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134
+ D R+ E + +V E+ + G V K+ + A
Sbjct: 378 ETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIV-KLNGHEINSRAY 421
Query: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194
K D+ R SL SGG+ R +A+ L ++L DEPT+ LD E + + D
Sbjct: 422 CSAFNFKGGDQQQRIGSL-SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480
Query: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254
+ A V ++H+ F ++A ++ E N E+F E + LS+
Sbjct: 481 LENFA---GCAVIISHDRMFLDRLATHILAF------EGNGHVEWFEGNFEEYEKDKLSR 531
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 49.3 bits (116), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 34 RDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRR 93
++++ + G IIAGPSG GKS + C+ + + G I ++ D I +
Sbjct: 349 QNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISRDF--IEKFSA 406
Query: 94 DVGMVFQHFNLFSNLSVLENCTLGPIW-VRKMPKKDAEELAMHY-LNKVKIADKSHRSSS 151
+G + QH +LF +S+ EN L + +K A+ + H + +K ++ S
Sbjct: 407 QIGYLSQHCSLFP-ISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGYQTTYCSD 465
Query: 152 LLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHE 211
+ Q+ ++R + P I+L DEP LD E ++ + E T+V ++H+
Sbjct: 466 EIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 46.2 bits (108), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQPK---IMLFDEPTSALDPEMVKEVLDIMIELAEEGMT 204
+S++ LSGGESQR +A+ L Q + + DEPT+ L + ++L+I+ L + G +
Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900
Query: 205 MVCVTHEM 212
++ + H +
Sbjct: 901 IIVIEHNL 908
Score = 41.2 bits (95), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 148 RSSSLLSGGESQRAAIARSL--CMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTM 205
R+S++LS GESQR +A + + + + DEP+ L ++++ + L + G T+
Sbjct: 499 RNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRDNTKLINTLKHLRDTGNTV 558
Query: 206 VCVTHE---MGFARQVAD--RVVFMDQGQIVEQNSPEEFFNNP 243
+ V H+ M A + D ++ G+IV + SP + +P
Sbjct: 559 IVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAHP 601
Score = 28.9 bits (63), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 31 HALRDINLNVLRGERVIIAGPSGSGKSTL 59
H L++I++ + R + +++ G SGSGKS+L
Sbjct: 15 HNLQNISIELPRNKLIVMTGVSGSGKSSL 43
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 45.4 bits (106), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 14/212 (6%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEIIINGIPLNDDIRNIHE 90
+R +NL V E V I GP+GSGKSTL ++ + ++ AG+I+ G + D +
Sbjct: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESIL-DWSIVER 77
Query: 91 VRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNKV-KIA------ 143
+ + + FQ+ + +++ + RK + + E L + KV KI
Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-ARNEKELLIPDFTRKVRKITAELGIN 136
Query: 144 -DKSHRSSSL-LSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEE 201
D R +L SGGE + A I + ++P + + DE S LD + +K + L +
Sbjct: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
Query: 202 GMTMVCVTHEMGFARQVA-DRVVFMDQGQIVE 232
+ + +TH + D + + G+I++
Sbjct: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 29.6 bits (65), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 3 NTPINSKNPPKNNFAVEIKFLNKWYGNFHALRD-------INLNVLRGERVII--AGPSG 53
P + K+ K N I+ L++ + +++ + + V++ + +I+ GP G
Sbjct: 317 GVPWDKKSKTKKNLDFAIRILDQDHFGLEKVKERIIEYLAVQMRVIKNKGLILCFVGPPG 376
Query: 54 SGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRN 87
GK++L + I Q + + G+ DIR
Sbjct: 377 VGKTSLAQSIAKATGRQYVRMSLGGVYDEADIRG 410
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 29.6 bits (65), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 46 VIIAGPSGSGKSTLIRCIN-HIEKHQ 70
V+I+G +GSGK+TL+ C+ +I+K +
Sbjct: 253 VLISGGTGSGKTTLLNCLTRYIDKDE 278
>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1775
Score = 28.9 bits (63), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 38 LNVLRGERVIIAGPSGSGKSTLIRCI 63
++V+ G+ +II GP G+GKS I I
Sbjct: 414 IDVINGKNLIIEGPPGTGKSQTITNI 439
>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 222
Score = 28.1 bits (61), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 42 RGERVIIAGPSGSGKSTLIR 61
RG +II+ PSG GKST+ R
Sbjct: 14 RGMMLIISSPSGVGKSTIAR 33
>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 520
Score = 27.3 bits (59), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 148 RSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKE-VLDIMIELAEEGMTMV 206
R S + E +A I R + ++L + + E E V + + +GMT
Sbjct: 420 RESDAIYREEIHKAGIYRKIWQAFTVLLPVQTVGVMGDERTYEYVCSLRAVTSIDGMTAD 479
Query: 207 CVTHEMGFARQVADRVV 223
H+M F QVA R+V
Sbjct: 480 FYHHDMNFLSQVAIRIV 496
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 46 VIIAGPSGSGKSTL 59
VI+ GPSGSGKS L
Sbjct: 67 VILVGPSGSGKSCL 80
>537021.9.peg.887_1
Length = 133
Score = 26.6 bits (57), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 46 VIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLNDDIRNIHEVRRDVGMVFQHFNLF 105
+ I+GP+ SGKS + +N K I + + + D +R + D M L+
Sbjct: 13 IFISGPTASGKS--LCAVNLAHKFNGAIINADSMQVYDTLRILTSRPSDQDMQSIPHYLY 70
Query: 106 SNLSVLENCTLGPIWVRKMPKKDAE 130
+ ++ + G W+R KK AE
Sbjct: 71 GYVPAQKSYSTGK-WLRYAIKKIAE 94
>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
asiaticus str. psy62]
Length = 423
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 42 RGERVIIAGPSGSGKSTLIRCINH 65
+G+R +I P +GK+ L++ I H
Sbjct: 173 KGQRSLIVAPPRTGKTILLQNIAH 196
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 24.3 bits (51), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 46 VIIAGPSGSGKSTLIRCI 63
V++ GP G+GK+ L R +
Sbjct: 184 VLLVGPPGTGKTLLARAV 201
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 6 INSKNPPKNNFAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLI 60
I SK PP A+ + + K + + DI + G+R+ + SG GKSTL+
Sbjct: 128 IMSKVPP----AMNRQRVEKGFKTGIRVIDIFTPLCHGQRIGVFAGSGIGKSTLL 178
>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 201
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 45 RVIIAGPSGSGKST 58
R+I GP GSGK T
Sbjct: 2 RIIFLGPPGSGKGT 15
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 479
Score = 23.9 bits (50), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 41 LRGERVIIAGPSGSGKSTLI 60
+RG +++ G G GKSTL+
Sbjct: 88 VRGSVILVGGDPGIGKSTLL 107
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 23.5 bits (49), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 42 RGERVI-IAGPSGSGKSTLIRCINH 65
+ +R I I G GSGKSTL+ I +
Sbjct: 499 KAQRFIHIRGVGGSGKSTLMNLIKY 523
>gi|254781214|ref|YP_003065627.1| hypothetical protein CLIBASIA_05605 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 110
Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 130 EELAMHYLNKVKIADKSHRSSSLLSG 155
E L + +N++ I + SSSLLSG
Sbjct: 81 ESLRAYEMNRIPIPARRFTSSSLLSG 106
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 39 NVLRGERVIIAGPSGSGKSTLI 60
++ R ++IAG +GSGKS I
Sbjct: 450 DLARMPHLLIAGTTGSGKSVAI 471
>gi|254780654|ref|YP_003065067.1| Glyceraldehyde 3-Phosphate Dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 333
Score = 23.1 bits (48), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 44 ERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIING 78
+RV+++ P K T++ +NH ++ +++ N
Sbjct: 115 QRVLVSAPCKGVKKTIVYGVNHQSLNKEDKVVSNA 149
>gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 339
Score = 23.1 bits (48), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 103 NLFSNLSVLENCTLGPIWVRKM--PKKDAEELAMHYL--NKVKIADK----SHRSSSLLS 154
LF+ L + C G + M P K A +++ + N +KI + + + + LS
Sbjct: 200 TLFNELYTMRVCFEGLVLKSNMILPGKSAPQVSDEEIASNTIKIFKRVVPCAVQGIAFLS 259
Query: 155 GGESQRAAIAR 165
GG+S++ A AR
Sbjct: 260 GGQSEQDATAR 270
>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 744
Score = 23.1 bits (48), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 46 VIIAGPSGSGKSTLIRCI 63
+++AG +GSGKS I +
Sbjct: 415 ILVAGTTGSGKSVAINTM 432
>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 448
Score = 22.7 bits (47), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 9/33 (27%)
Query: 77 NGIPLNDDI---------RNIHEVRRDVGMVFQ 100
NGI +N D R +HEVR D+G+
Sbjct: 211 NGININLDCGSTNVLSLQRKVHEVRADIGIALD 243
>537021.9.peg.409_1
Length = 242
Score = 22.7 bits (47), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 204 TMVCVTHEMGFARQVADRVV 223
T++C+TH A +++ RV+
Sbjct: 64 TLLCLTHTKAAAAEMSHRVL 83
>gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 318
Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEII 75
+ D +++ R + I+A + GK L R ++ Q E+I
Sbjct: 78 VSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVI 120
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 22.3 bits (46), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 44 ERVIIAGPSGSGKSTLIRCI 63
+ V+ GP G GK+TL + +
Sbjct: 55 DHVLFVGPPGLGKTTLAQVV 74
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 22.3 bits (46), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 46 VIIAGPSGSGKSTLIRCINHI 66
+++ GP+G GK+ L + + I
Sbjct: 116 ILLVGPTGCGKTYLAQTLARI 136
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 165,180
Number of Sequences: 1233
Number of extensions: 6561
Number of successful extensions: 102
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 56
length of query: 257
length of database: 328,796
effective HSP length: 72
effective length of query: 185
effective length of database: 240,020
effective search space: 44403700
effective search space used: 44403700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 37 (18.9 bits)