Query gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs 103 out of 452
Neff 4.8
Searched_HMMs 33803
Date Mon May 23 00:51:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780174.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2jya_A AGR_C_3324P, uncharact 100.0 1.4E-36 4.2E-41 246.3 5.0 78 1-78 27-104 (106)
2 >2q4a_A Clavaminate synthase-l 60.7 5.9 0.00017 21.7 2.3 23 32-54 28-50 (60)
3 >3kp1_A D-ornithine aminomutas 59.5 9.2 0.00027 20.5 3.1 28 22-49 3-35 (59)
4 >1xrs_B D-lysine 5,6-aminomuta 57.3 11 0.00033 20.0 3.2 39 9-49 19-63 (94)
5 >2d73_A Alpha-glucosidase SUSB 54.2 6.6 0.0002 21.4 1.7 45 10-54 37-83 (309)
6 >2qk4_A Trifunctional purine b 52.6 12 0.00036 19.8 2.8 30 27-56 69-98 (120)
7 >2yw2_A Phosphoribosylamine--g 50.0 12 0.00035 19.9 2.4 32 25-56 41-72 (97)
8 >1w96_A ACC, acetyl-coenzyme A 45.2 19 0.00056 18.6 2.9 25 32-56 4-28 (66)
9 >2hpu_A NOSL protein; alpha be 45.1 15 0.00043 19.3 2.3 42 9-50 89-135 (175)
10 >3c1d_A Protein ORAA, regulato 44.4 13 0.00038 19.7 1.9 14 34-47 48-61 (61)
11 >1uc8_A LYSX, lysine biosynthe 41.5 26 0.00077 17.7 3.1 25 31-55 6-30 (72)
12 >3c5v_A PME-1, protein phospha 37.9 21 0.00063 18.3 2.2 18 32-49 1-18 (59)
13 >2yrx_A Phosphoribosylglycinam 32.9 40 0.0012 16.6 3.0 26 30-55 5-30 (72)
14 >1a9x_A Carbamoyl phosphate sy 32.5 45 0.0013 16.3 3.5 26 30-55 5-30 (69)
15 >3bsu_A Ribonuclease H1, RNAse 32.5 24 0.0007 18.0 1.7 19 28-46 34-52 (53)
16 >2ip4_A PURD, phosphoribosylam 32.4 45 0.0013 16.3 3.1 26 30-55 6-31 (69)
17 >1ng7_A Poliovirus 3A-N, genom 32.3 22 0.00064 18.2 1.5 17 35-51 31-47 (60)
18 >2w70_A Biotin carboxylase; li 31.9 42 0.0012 16.5 2.9 24 32-55 5-28 (70)
19 >3lp8_A Phosphoribosylamine-gl 31.7 46 0.0014 16.2 3.1 32 25-56 62-93 (351)
20 >3lp8_A Phosphoribosylamine-gl 30.9 48 0.0014 16.1 3.4 30 29-58 23-52 (91)
21 >1a9x_A Carbamoyl phosphate sy 30.9 47 0.0014 16.2 3.1 26 30-55 5-30 (68)
22 >3lo3_A Uncharacterized conser 30.6 48 0.0014 16.1 3.1 22 23-44 51-72 (94)
23 >3jtp_A Adapter protein MECA 1 29.8 45 0.0013 16.3 2.8 26 23-48 4-29 (98)
24 >1hq8_A NKG2-D; homodimer, CIS 29.7 38 0.0011 16.8 2.4 53 16-68 8-60 (75)
25 >1ulz_A Pyruvate carboxylase N 29.5 50 0.0015 16.0 3.0 24 32-55 5-28 (71)
26 >1qc6_A EVH1 domain from ENA/V 29.2 51 0.0015 16.0 3.5 24 23-46 83-106 (130)
27 >2vpq_A Acetyl-COA carboxylase 28.9 48 0.0014 16.1 2.8 24 32-55 5-28 (70)
28 >1tif_A IF3-N, translation ini 27.8 51 0.0015 16.0 2.8 36 30-65 26-63 (78)
29 >1kjq_A GART 2, phosphoribosyl 26.7 56 0.0017 15.7 3.5 28 29-56 6-33 (73)
30 >1snn_A DHBP synthase, 3,4-dih 26.7 46 0.0013 16.3 2.4 22 32-53 193-214 (227)
31 >3jtn_A YPBH, adapter protein 26.5 57 0.0017 15.7 3.0 19 27-45 2-20 (91)
32 >2qk4_A Trifunctional purine b 26.3 57 0.0017 15.6 3.7 29 29-57 26-54 (94)
33 >2fiu_A Conserved hypothetical 26.1 58 0.0017 15.6 3.1 22 23-44 52-73 (99)
34 >1ddw_A GLGF-domain protein ho 25.3 50 0.0015 16.0 2.4 17 29-45 87-103 (120)
35 >2w7t_A CTP synthetase, putati 24.9 31 0.00092 17.3 1.2 22 32-53 82-103 (180)
36 >2yw2_A Phosphoribosylamine--g 24.2 63 0.0019 15.4 3.7 28 29-56 23-50 (91)
37 >1zbt_A RF-1, peptide chain re 23.8 42 0.0012 16.5 1.7 20 38-57 33-52 (150)
38 >3js8_A Cholesterol oxidase; c 23.2 66 0.0019 15.3 3.5 51 4-54 8-61 (87)
39 >3a24_A Alpha-galactosidase; g 22.8 33 0.00096 17.1 1.0 45 10-54 14-60 (182)
40 >3fkq_A NTRC-like two-domain p 22.7 44 0.0013 16.4 1.7 48 9-56 31-78 (138)
41 >1gqe_A Release factor 2, RF2; 22.7 53 0.0016 15.8 2.1 18 38-55 32-49 (162)
42 >1qme_A Penicillin-binding pro 22.7 67 0.002 15.2 3.0 29 30-58 15-43 (71)
43 >2dzd_A Pyruvate carboxylase; 22.4 68 0.002 15.2 2.9 24 32-55 5-28 (71)
44 >3ced_A Methionine import ATP- 22.3 68 0.002 15.2 2.8 30 24-53 46-80 (82)
45 >2dwc_A PH0318, 433AA long hyp 22.1 69 0.002 15.1 3.4 26 30-55 6-31 (72)
46 >2e9y_A Carbamate kinase; tran 21.9 55 0.0016 15.7 2.0 24 29-52 9-32 (44)
47 >2cqy_A Propionyl-COA carboxyl 21.5 71 0.0021 15.1 3.0 28 29-56 28-55 (108)
48 >1gso_A Protein (glycinamide r 21.3 56 0.0017 15.7 2.0 26 30-55 5-30 (72)
49 >2ihr_1 Peptide chain release 21.2 51 0.0015 15.9 1.8 19 37-55 29-47 (172)
50 >1qme_A Penicillin-binding pro 20.5 72 0.0021 15.0 2.4 22 34-55 6-27 (53)
51 >2hw0_A Replicase; alpha+beta, 20.2 76 0.0022 14.9 3.1 24 33-56 87-111 (115)
No 1
>>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:)
Probab=100.00 E-value=1.4e-36 Score=246.31 Aligned_cols=78 Identities=49% Similarity=0.831 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 900036689820777363027776520499819989999999986984899567767755655655204678888889
Q gi|254780174|r 1 MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYDRLEPWTH 78 (78)
Q Consensus 1 vLEfe~~~~~~~dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksYadNF~~~R~~~WtH 78 (78)
+|||++..++++|||||||||+||++||+|.|+|+|+||+||+++||+|+|++|+.+++++|||||||+|||++||||
T Consensus 27 ~lefe~~~~r~~~PLMGWtsS~D~~~qv~l~F~skE~AIayaek~G~~y~V~~p~~r~~~~ksYadNF~~~r~~~wth 104 (106)
T 2jya_A 27 VLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFRFNRTQPWTH 104 (106)
T ss_dssp EEEEEEECCSCCCTTTCSCSCCCSEEEEEEEESSHHHHHHHHHHHTCEEEECCCTTC---------------------
T ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCEEEEECCHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 998406788756787352066875575188858999999999987965999815866666451689677888977889
No 2
>>2q4a_A Clavaminate synthase-like protein AT3G21360; ensemble refinement, refinement methodology development, structural genomics; 2.39A {Arabidopsis thaliana} (A:174-233)
Probab=60.67 E-value=5.9 Score=21.69 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=19.1
Q ss_pred ECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 19989999999986984899567
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p 54 (78)
=++++++.+||..+|++++=.+.
T Consensus 28 T~dr~eVE~~c~~~g~~~eW~~d 50 (60)
T 2q4a_A 28 THDKNLAEQRAVDLGMKLEWTED 50 (60)
T ss_dssp CSSHHHHHHHHHHTTCCCEECTT
T ss_pred CCCHHHHHHHHHHHCCCCCCCCH
T ss_conf 44367888876540455100420
No 3
>>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A* (A:514-572)
Probab=59.47 E-value=9.2 Score=20.53 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=23.2
Q ss_pred CCCCCEEEEEECCHH-----HHHHHHHHCCCCE
Q ss_conf 776520499819989-----9999999869848
Q gi|254780174|r 22 KDTLQQVKLFFPSLE-----AAEKYASDHGIQY 49 (78)
Q Consensus 22 ~Dt~~qv~L~F~tkE-----~Ai~yA~~~g~~y 49 (78)
+|---|+.|+|+.-| +||.+|+|.|+.=
T Consensus 3 ~DG~i~~~m~lp~~e~~AE~AAie~~kKmgLed 35 (59)
T 3kp1_A 3 ADGTVLLTMFLPTSKRVAEFAAIEFAKKMNLEE 35 (59)
T ss_dssp TCCEEEEEEEESSCHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 552777765411128899999999998624420
No 4
>>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'- deoxyadenosine, radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} (B:1-94)
Probab=57.26 E-value=11 Score=20.04 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECC------HHHHHHHHHHCCCCE
Q ss_conf 98207773630277765204998199------899999999869848
Q gi|254780174|r 9 PPYIEPLLGYTSSKDTLQQVKLFFPS------LEAAEKYASDHGIQY 49 (78)
Q Consensus 9 ~~~~dpLMGWtss~Dt~~qv~L~F~t------kE~Ai~yA~~~g~~y 49 (78)
...+-|-.-|.+ |-.-|+.+.++. +|+|+.+|+|.|++=
T Consensus 19 ~~~IkPygd~~~--DG~VQlsftLPv~~~~~AeeAA~~la~KMGle~ 63 (94)
T 1xrs_B 19 LERVKPYGDTMN--DGKVQLSFTLPLKNNERSAEAAKQIALKMGLEE 63 (94)
T ss_dssp ----------------CEEEEEEESSCSSHHHHHHHHHHHHTTSSCC
T ss_pred HHHHCCCCCCCC--CHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 666421346554--636540100545672889999999999738855
No 5
>>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:310-618)
Probab=54.16 E-value=6.6 Score=21.40 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCCCCEE--EEEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 8207773630277765204--99819989999999986984899567
Q gi|254780174|r 10 PYIEPLLGYTSSKDTLQQV--KLFFPSLEAAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 10 ~~~dpLMGWtss~Dt~~qv--~L~F~tkE~Ai~yA~~~g~~y~V~~p 54 (78)
....|-|||++-..-...+ .+..++.+.-+..|++.|++|.|+..
T Consensus 37 ~~~~p~~gw~sw~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~iDd 83 (309)
T 2d73_A 37 ELTSVKLGETDYSKTKPNGKHSANTANVKRYIDFAAAHGFDAVLVEG 83 (309)
T ss_dssp SCSCCCTTTCCGGGSCBCSCBCCCHHHHHHHHHHHHHTTCSEEEECS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 76543236654212467776677889999999999982997899941
No 6
>>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:1-120)
Probab=52.56 E-value=12 Score=19.76 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=25.7
Q ss_pred EEEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 049981998999999998698489956776
Q gi|254780174|r 27 QVKLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 27 qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
.+.+.-.+.++.+.||+++++++.|+-|-.
T Consensus 69 ~v~i~~~d~~~i~~~a~~~~iDlvviGPE~ 98 (120)
T 2qk4_A 69 NTAISISDHTALAQFCKEKKIEFVVVGPEA 98 (120)
T ss_dssp ECCCCSSCHHHHHHHHHHHTCCEEEECSSH
T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEECCCH
T ss_conf 135585799999999998599999989738
No 7
>>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A (A:1-97)
Probab=49.97 E-value=12 Score=19.85 Aligned_cols=32 Identities=13% Similarity=0.361 Sum_probs=25.8
Q ss_pred CCEEEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 52049981998999999998698489956776
Q gi|254780174|r 25 LQQVKLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 25 ~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
-..+.+.-.+.++.+.||+++++++.|+-|-.
T Consensus 41 ~~~~~i~~~d~~~i~~~a~~~~iDlvviGPE~ 72 (97)
T 2yw2_A 41 AKRVDISPTDVEKLAEFAKNEGVDFTIVGPEA 72 (97)
T ss_dssp SEEECSCTTCHHHHHHHHHHHTCSEEEECSHH
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEECCCH
T ss_conf 43387688999999999998598999989857
No 8
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:217-282)
Probab=45.23 E-value=19 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=21.0
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 1998999999998698489956776
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
+.+.|+|.+||++.|++..|.+...
T Consensus 4 ~~~~~~~~~~~~~ig~PvVvKP~~~ 28 (66)
T 1w96_A 4 CTSPEDGLQKAKRIGFPVMIKASEG 28 (66)
T ss_dssp CSSHHHHHHHHHHHCSSEEEEETTC
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 5999999999985698789862355
No 9
>>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} (A:)
Probab=45.14 E-value=15 Score=19.29 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=28.3
Q ss_pred CCCCCCCCCC-CCCCC---CCCE-EEEEECCHHHHHHHHHHCCCCEE
Q ss_conf 9820777363-02777---6520-49981998999999998698489
Q gi|254780174|r 9 PPYIEPLLGY-TSSKD---TLQQ-VKLFFPSLEAAEKYASDHGIQYC 50 (78)
Q Consensus 9 ~~~~dpLMGW-tss~D---t~~q-v~L~F~tkE~Ai~yA~~~g~~y~ 50 (78)
..|+|--.-| +-+++ ++.. -.+-|.++++|.+|++.+|=...
T Consensus 89 g~widA~~A~yV~gs~~~~pMg~~~~~aFa~~~~A~~f~~~~GG~v~ 135 (175)
T 2hpu_A 89 GNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQVL 135 (175)
T ss_dssp CEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEEEEE
T ss_pred CCCEECCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 66469775699988987767988764686899999999998399993
No 10
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:1-61)
Probab=44.45 E-value=13 Score=19.66 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHCCC
Q ss_conf 98999999998698
Q gi|254780174|r 34 SLEAAEKYASDHGI 47 (78)
Q Consensus 34 tkE~Ai~yA~~~g~ 47 (78)
..|.+|+||..|||
T Consensus 48 eIe~vIa~C~q~~w 61 (61)
T 3c1d_A 48 DYERVIAWCHEHGY 61 (61)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999999399
No 11
>>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:103-174)
Probab=41.53 E-value=26 Score=17.74 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=20.9
Q ss_pred EECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8199899999999869848995677
Q gi|254780174|r 31 FFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 31 ~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
-..|.|+|+++|++-|++..|....
T Consensus 6 ~v~s~eea~~~a~~iGyPVivKp~~ 30 (72)
T 1uc8_A 6 LATDREEALRLMEAFGYPVVLKPVI 30 (72)
T ss_dssp EESSHHHHHHHHHHHCSSEEEECSB
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 1466167788776421100774178
No 12
>>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P (A:167-225)
Probab=37.86 E-value=21 Score=18.30 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=16.0
Q ss_pred ECCHHHHHHHHHHCCCCE
Q ss_conf 199899999999869848
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQY 49 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y 49 (78)
|+|.++||.++-+.|.--
T Consensus 1 F~S~~~AIeW~vrsg~ir 18 (59)
T 3c5v_A 1 FKSLENAIEWSVKSGQIR 18 (59)
T ss_dssp BSSHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHCCHHH
T ss_conf 777999999764201012
No 13
>>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:138-209)
Probab=32.86 E-value=40 Score=16.58 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
-.+.|.|++.++|++.|++..|.+..
T Consensus 5 ~~~~~~~e~~~~a~~igyPvvvKp~~ 30 (72)
T 2yrx_A 5 AAFTSYEEAKAYIEQKGAPIVIKADG 30 (72)
T ss_dssp EEESCHHHHHHHHHHHCSSEEEEECC
T ss_pred EEECCHHHHHHHHHHCCCEEEEECCC
T ss_conf 78878999987665046529994473
No 14
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:143-211)
Probab=32.51 E-value=45 Score=16.30 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.1
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..+.|.++|..+|++-|++..|.+..
T Consensus 5 ~~~~~~~e~~~~~~~ig~PvviKp~~ 30 (69)
T 1a9x_A 5 GIAHTMEEALAVAADVGFPCIIRPSF 30 (69)
T ss_dssp EEESSHHHHHHHHHHHCSSEEEEETT
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 01399999999998639988999788
No 15
>>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens} (A:)
Probab=32.49 E-value=24 Score=17.98 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=15.8
Q ss_pred EEEEECCHHHHHHHHHHCC
Q ss_conf 4998199899999999869
Q gi|254780174|r 28 VKLFFPSLEAAEKYASDHG 46 (78)
Q Consensus 28 v~L~F~tkE~Ai~yA~~~g 46 (78)
+--.|.|+++|.+|.+.++
T Consensus 34 ~~k~F~t~~eA~~~~~~~~ 52 (53)
T 3bsu_A 34 RFKKFATEDEAWAFVRKSA 52 (53)
T ss_dssp EEEEESSHHHHHHHHHC--
T ss_pred EECCCCCHHHHHHHHHHCC
T ss_conf 4788799999999997168
No 16
>>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotide, structural genomics, NPPSFA; 2.80A {Thermus thermophilus HB8} (A:115-183)
Probab=32.37 E-value=45 Score=16.29 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=22.0
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..+.+.++|.+++++.|+..+|....
T Consensus 6 ~~v~~~~~~~~~~~~~g~PvViKp~~ 31 (69)
T 2ip4_A 6 RVFREPLEALAYLEEVGVPVVVKDSG 31 (69)
T ss_dssp EEESSHHHHHHHHHHHCSSEEEECTT
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 00125799999998658977996366
No 17
>>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} (A:)
Probab=32.32 E-value=22 Score=18.24 Aligned_cols=17 Identities=12% Similarity=0.263 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCCCEEE
Q ss_conf 89999999986984899
Q gi|254780174|r 35 LEAAEKYASDHGIQYCV 51 (78)
Q Consensus 35 kE~Ai~yA~~~g~~y~V 51 (78)
-++-+.||+++||-..+
T Consensus 31 s~eVr~YC~~kgWIvp~ 47 (60)
T 1ng7_A 31 SQEVRDYCEKKGWIVNI 47 (60)
T ss_dssp CHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHCCEEECC
T ss_conf 59999999977915247
No 18
>>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ... (A:135-204)
Probab=31.87 E-value=42 Score=16.47 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=20.2
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 199899999999869848995677
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..|.|+|.++|++.|++..|....
T Consensus 5 v~s~~e~~~~~~~iGyPvvvKp~~ 28 (70)
T 2w70_A 5 GDDMDKNRAIAKRIGYPVIIKASG 28 (70)
T ss_dssp CSCHHHHHHHHHHHCSSEEEEETT
T ss_pred CCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 882999999987549972311220
No 19
>>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} (A:1-118,A:210-442)
Probab=31.69 E-value=46 Score=16.24 Aligned_cols=32 Identities=13% Similarity=0.056 Sum_probs=26.2
Q ss_pred CCEEEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 52049981998999999998698489956776
Q gi|254780174|r 25 LQQVKLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 25 ~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
-.-+.+.-.+.++.+.||+++++++.|+-|-.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~dl~~~gpe~ 93 (351)
T 3lp8_A 62 ADIIDIDINSTIEVIQVCKKEKIELVVIGPET 93 (351)
T ss_dssp SEECCCCTTCHHHHHHHHHHTTCCEEEECSHH
T ss_pred CCEEEECCCCHHHHHHHHHHCCCCEEEECCCH
T ss_conf 81276378999999999998099999989708
No 20
>>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} (A:119-209)
Probab=30.94 E-value=48 Score=16.14 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=24.6
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 998199899999999869848995677677
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIPSCKES 58 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~ 58 (78)
-..+.+.|+|.+++++.|++..|.......
T Consensus 23 ~~~v~~~~~~~~~~~~~g~PvviKp~~~~~ 52 (91)
T 3lp8_A 23 YGYFVDTNSAYKFIDKHKLPLVVKADGLAQ 52 (91)
T ss_dssp EEEESSHHHHHHHHHHSCSSEEEEESSCCT
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 101179999999987389978997587778
No 21
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756)
Probab=30.92 E-value=47 Score=16.15 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=21.7
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
-.+.+.++|.++|++.|++..|....
T Consensus 5 ~~~~~~~e~~~~~~~~g~PvviKp~~ 30 (68)
T 1a9x_A 5 ATVTAIEMAVEKAKEIGYPLVVRASY 30 (68)
T ss_dssp EECCSHHHHHHHHHHHCSSEEEEC--
T ss_pred EEEEECHHHHHHHHHCCCCEEEECCC
T ss_conf 13410047789998659766852123
No 22
>>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.38A {Colwellia psychrerythraea} (A:)
Probab=30.56 E-value=48 Score=16.10 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=16.9
Q ss_pred CCCCEEEEEECCHHHHHHHHHH
Q ss_conf 7652049981998999999998
Q gi|254780174|r 23 DTLQQVKLFFPSLEAAEKYASD 44 (78)
Q Consensus 23 Dt~~qv~L~F~tkE~Ai~yA~~ 44 (78)
+...-|-+.|+|+|+|.++-..
T Consensus 51 ~~~~~viieFPs~~aa~~~~~S 72 (94)
T 3lo3_A 51 EHKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp CCSEEEEEEESSHHHHHHHHHS
T ss_pred CCCEEEEEECCCHHHHHHHHCC
T ss_conf 9883999987999999999779
No 23
>>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} (A:)
Probab=29.82 E-value=45 Score=16.28 Aligned_cols=26 Identities=15% Similarity=0.014 Sum_probs=20.7
Q ss_pred CCCCEEEEEECCHHHHHHHHHHCCCC
Q ss_conf 76520499819989999999986984
Q gi|254780174|r 23 DTLQQVKLFFPSLEAAEKYASDHGIQ 48 (78)
Q Consensus 23 Dt~~qv~L~F~tkE~Ai~yA~~~g~~ 48 (78)
+...++-+.|++.|+.|++|+.....
T Consensus 4 ~~~~~~i~~F~~ledvi~~a~~~~~~ 29 (98)
T 3jtp_A 4 EQKLQFVLRFGDFEDVISLSKLNVNG 29 (98)
T ss_dssp ---CEEEEEESSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCHHHHHHHHCCCCCC
T ss_conf 54415999969999999986664668
No 24
>>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus} (A:1-62,A:111-123)
Probab=29.68 E-value=38 Score=16.76 Aligned_cols=53 Identities=8% Similarity=-0.102 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHC
Q ss_conf 36302777652049981998999999998698489956776775565565520
Q gi|254780174|r 16 LGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNF 68 (78)
Q Consensus 16 MGWtss~Dt~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~~~ksYadNF 68 (78)
-||+.-++.==.+...-.|-++|..+|+.+|=...++.......-..++..+|
T Consensus 8 ~gW~~~~~~CY~~~~~~~tW~~A~~~C~~~gg~La~I~s~~e~~fl~~~i~~~ 60 (75)
T 1hq8_A 8 NNWICHRNNCYQFFNEEKTWNQSQASCLSQNSSLLKIYSKEEQDFLKLVKSYH 60 (75)
T ss_dssp TTCEEETTEEEEEEEEEECHHHHHHHHHTTTCEECCCSCTTTTGGGGGCCSCE
T ss_pred CCCEEECCEEEEEECEECCHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCE
T ss_conf 98799799999997700299999999987699873467999999998616674
No 25
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:133-203)
Probab=29.54 E-value=50 Score=16.00 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.2
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 199899999999869848995677
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..|.|+|..+|++.|++..|.+..
T Consensus 5 v~~~eea~~~a~~iG~PvVvKP~~ 28 (71)
T 1ulz_A 5 LKSLEEAKALAREIGYPVLLKATA 28 (71)
T ss_dssp CCCHHHHHHHHHHHCSSEEEEECS
T ss_pred CCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 599999999998559969999866
No 26
>>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} (A:)
Probab=29.23 E-value=51 Score=15.96 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=19.1
Q ss_pred CCCCEEEEEECCHHHHHHHHHHCC
Q ss_conf 765204998199899999999869
Q gi|254780174|r 23 DTLQQVKLFFPSLEAAEKYASDHG 46 (78)
Q Consensus 23 Dt~~qv~L~F~tkE~Ai~yA~~~g 46 (78)
|...++-|.|.+.+||..|++.-.
T Consensus 83 ~~~~~~GLnF~se~eA~~F~~~v~ 106 (130)
T 1qc6_A 83 DARQVYGLNFASKEEATTFSNAXL 106 (130)
T ss_dssp CSSCEEEEEESCHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCHHHHHHHHHHHH
T ss_conf 066899998299999999999999
No 27
>>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:133-202)
Probab=28.93 E-value=48 Score=16.10 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 199899999999869848995677
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..|.|+|.++|++.|++..|.+..
T Consensus 5 v~s~ee~~~~~~~iG~PvvvKP~~ 28 (70)
T 2vpq_A 5 MKDVSEAKKIAKKIGYPVIIKATA 28 (70)
T ss_dssp BSCHHHHHHHHHHHCSSEEEEETT
T ss_pred CCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 699999999999739958999887
No 28
>>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=27.78 E-value=51 Score=15.97 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=26.4
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCCCCCC--CCCCHH
Q ss_conf 981998999999998698489956776775--565565
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSCKESQ--KELSYQ 65 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~~--~~ksYa 65 (78)
|---+.++|+.-|+..|++...+-|..... +.-.|+
T Consensus 26 lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckimdyg 63 (78)
T 1tif_A 26 LGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 63 (78)
T ss_dssp EEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHH
T ss_pred ECCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCH
T ss_conf 57224999999999816787984477899889997523
No 29
>>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:126-198)
Probab=26.67 E-value=56 Score=15.68 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=23.2
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9981998999999998698489956776
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
-..+.+.++|.++|++.|++..|.+...
T Consensus 6 ~~~v~~~~~~~~~~~~~g~PvVvKP~~~ 33 (73)
T 1kjq_A 6 YRFADSESLFREAVADIGYPCIVKPVMS 33 (73)
T ss_dssp EEEESSHHHHHHHHHHHCSSEEEEESCC
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 3133626778999986288816766555
No 30
>>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} (A:)
Probab=26.66 E-value=46 Score=16.25 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.6
Q ss_pred ECCHHHHHHHHHHCCCCEEEEC
Q ss_conf 1998999999998698489956
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~ 53 (78)
-.++++|..||+++|+.+.-++
T Consensus 193 ~~~~~~~~~fA~~h~l~~isi~ 214 (227)
T 1snn_A 193 AMSKNETKRYAEKHNLIYLSGE 214 (227)
T ss_dssp BCCHHHHHHHHHHHTCCEEEHH
T ss_pred CCCHHHHHHHHHHCCCCEEEHH
T ss_conf 4588999999998499789899
No 31
>>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A (A:)
Probab=26.50 E-value=57 Score=15.66 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=17.0
Q ss_pred EEEEEECCHHHHHHHHHHC
Q ss_conf 0499819989999999986
Q gi|254780174|r 27 QVKLFFPSLEAAEKYASDH 45 (78)
Q Consensus 27 qv~L~F~tkE~Ai~yA~~~ 45 (78)
++-+.|++.|+.|++|+.-
T Consensus 2 ~~i~~F~~ledvi~~a~~l 20 (91)
T 3jtn_A 2 DIIYQFHSFEDIIQLSESL 20 (91)
T ss_dssp CEEEEESSHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHH
T ss_conf 4999809999999999971
No 32
>>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:121-214)
Probab=26.28 E-value=57 Score=15.64 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=24.4
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99819989999999986984899567767
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIPSCKE 57 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~p~~r 57 (78)
-..+.|.|+|.++++..|+.-.|..|...
T Consensus 26 ~~~~~~~e~~~~~~~~~g~p~vi~kp~~~ 54 (94)
T 2qk4_A 26 WKAFTKPEEACSFILSADFPALVVKASGL 54 (94)
T ss_dssp EEEESSHHHHHHHHHHCSSCEEEEEESBC
T ss_pred EEEEECHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 05761278899888762899579994565
No 33
>>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, PSI, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} (A:)
Probab=26.07 E-value=58 Score=15.61 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.2
Q ss_pred CCCCEEEEEECCHHHHHHHHHH
Q ss_conf 7652049981998999999998
Q gi|254780174|r 23 DTLQQVKLFFPSLEAAEKYASD 44 (78)
Q Consensus 23 Dt~~qv~L~F~tkE~Ai~yA~~ 44 (78)
..-..|-+.|+|+++|.+|-..
T Consensus 52 ~~~~~viieFPs~~aa~~~~~s 73 (99)
T 2fiu_A 52 ARARNVVIEFPSVQHAIDCYNS 73 (99)
T ss_dssp CCSEEEEEEESSHHHHHHHHHS
T ss_pred CCCEEEEEECCCHHHHHHHHCC
T ss_conf 9760799985999999988789
No 34
>>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} (A:)
Probab=25.29 E-value=50 Score=15.99 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=15.0
Q ss_pred EEEECCHHHHHHHHHHC
Q ss_conf 99819989999999986
Q gi|254780174|r 29 KLFFPSLEAAEKYASDH 45 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~ 45 (78)
-|.|.|.++|-+|++.-
T Consensus 87 GL~F~S~~dA~~F~~~~ 103 (120)
T 1ddw_A 87 GLGFSSEHHLSKFAEKF 103 (120)
T ss_dssp EEECSSHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHH
T ss_conf 02548989999999999
No 35
>>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:1-129,A:223-273)
Probab=24.87 E-value=31 Score=17.26 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=19.4
Q ss_pred ECCHHHHHHHHHHCCCCEEEEC
Q ss_conf 1998999999998698489956
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~ 53 (78)
++.+++|+.||+++|+.|-++-
T Consensus 82 iD~~~~i~~~are~~ip~hg~c 103 (180)
T 2w7t_A 82 VDGKCAAAQVARMNNIPYFGVX 103 (180)
T ss_dssp HHHHHHHHHHHHHHTCCEEEET
T ss_pred CHHHHHHHHHHHHCCCCHHHHH
T ss_conf 0689999999997388603444
No 36
>>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A (A:98-188)
Probab=24.19 E-value=63 Score=15.40 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.0
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9981998999999998698489956776
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
-..+.|.++|..+++..|++..|.....
T Consensus 23 ~~~~~s~~~~~~~~~~~g~PvvvKp~~~ 50 (91)
T 2yw2_A 23 YEVFTDFEKAKEYVEKVGAPIVVKADGL 50 (91)
T ss_dssp EEEESCHHHHHHHHHHHCSSEEEEESSC
T ss_pred CEEECCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3487888999999986389779961677
No 37
>>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:117-228,A:312-349)
Probab=23.80 E-value=42 Score=16.50 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=15.7
Q ss_pred HHHHHHHCCCCEEEECCCCC
Q ss_conf 99999986984899567767
Q gi|254780174|r 38 AEKYASDHGIQYCVIPSCKE 57 (78)
Q Consensus 38 Ai~yA~~~g~~y~V~~p~~r 57 (78)
=..||+++||.++|++....
T Consensus 33 Y~~~a~~~g~~~ev~~~~~~ 52 (150)
T 1zbt_A 33 YQKYAENQGWKFEVXEASAN 52 (150)
T ss_dssp HHHHHHHHTCEEEEEEEEEC
T ss_pred HHHHHHHCCCCEEECCCCCC
T ss_conf 99999852362565353467
No 38
>>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} (A:1-87)
Probab=23.16 E-value=66 Score=15.27 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH---HHHHHHHHCCCCEEEECC
Q ss_conf 036689820777363027776520499819989---999999986984899567
Q gi|254780174|r 4 FEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLE---AAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 4 fe~~~~~~~dpLMGWtss~Dt~~qv~L~F~tkE---~Ai~yA~~~g~~y~V~~p 54 (78)
+.+..+...+....|.+.........+.=.|.+ +++++|.++|+...+.-.
T Consensus 8 ~~~~d~~~~~~~~~~~~~~~~~P~~vv~P~s~~eV~~iv~~a~~~~~~v~~rgg 61 (87)
T 3js8_A 8 FPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGM 61 (87)
T ss_dssp CCTTSCCEEEEEECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999961345554131468556888899469999999999999987980999899
No 39
>>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} (A:271-452)
Probab=22.77 E-value=33 Score=17.14 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCCCCCCEEE--EEECCHHHHHHHHHHCCCCEEEECC
Q ss_conf 82077736302777652049--9819989999999986984899567
Q gi|254780174|r 10 PYIEPLLGYTSSKDTLQQVK--LFFPSLEAAEKYASDHGIQYCVIPS 54 (78)
Q Consensus 10 ~~~dpLMGWtss~Dt~~qv~--L~F~tkE~Ai~yA~~~g~~y~V~~p 54 (78)
+-+.|.|||++=.+....+. ..-++....+..|...|++|.++..
T Consensus 14 P~~~p~~gwnsW~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDd 60 (182)
T 3a24_A 14 PGKVAWDWWNDWNLDGVDFVTGVNNPTYKAYIDFASANGIEYVILDE 60 (182)
T ss_dssp CEEEECSTTTTTCCCSCSSCCSSSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 72479998125655887755677788999999999987997799998
No 40
>>3fkq_A NTRC-like two-domain protein; RER070207001320, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: ATP 2PE; 2.10A {Eubacterium rectale} (A:1-138)
Probab=22.73 E-value=44 Score=16.37 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 982077736302777652049981998999999998698489956776
Q gi|254780174|r 9 PPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 9 ~~~~dpLMGWtss~Dt~~qv~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
..+.++||-...+.--..=.-..|.++|.+..|.+.+.++..++.+.-
T Consensus 31 ~~Y~~rL~~yln~~~~~~f~v~aFt~~E~l~~~~~~~~iDiLLisE~~ 78 (138)
T 3fkq_A 31 KEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIAEEDF 78 (138)
T ss_dssp HHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHTCSEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 999999999973534884699993789999999861799989984864
No 41
>>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365)
Probab=22.73 E-value=53 Score=15.85 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.5
Q ss_pred HHHHHHHCCCCEEEECCC
Q ss_conf 999999869848995677
Q gi|254780174|r 38 AEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 38 Ai~yA~~~g~~y~V~~p~ 55 (78)
=..||+++||.++|++..
T Consensus 32 Y~~~a~~~g~~~evi~~~ 49 (162)
T 1gqe_A 32 YLRWAESRGFKTEIIEES 49 (162)
T ss_dssp HHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHCCCEEEECCCC
T ss_conf 999999869879986777
No 42
>>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} (A:579-649)
Probab=22.73 E-value=67 Score=15.22 Aligned_cols=29 Identities=10% Similarity=-0.134 Sum_probs=23.2
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 98199899999999869848995677677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSCKES 58 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~~r~ 58 (78)
+.=-+.++|...+++.|+.+.++.+...-
T Consensus 15 ~~g~~~~~A~~~l~~~gl~~~~~~~~~~V 43 (71)
T 1qme_A 15 VKDISPGDLAEELRRNLVQPIVVGTGTKI 43 (71)
T ss_dssp CTTCCHHHHHHHHHTTTCEEEEESSCSSE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCCCEE
T ss_conf 78999999999999779933981799779
No 43
>>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans} (A:139-209)
Probab=22.37 E-value=68 Score=15.18 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.4
Q ss_pred ECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 199899999999869848995677
Q gi|254780174|r 32 FPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 32 F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..|.++|.++|++-|++..|.+..
T Consensus 5 v~s~~ea~~~~~~iG~PvvVKP~~ 28 (71)
T 2dzd_A 5 VDGLEDVVAFAEAHGYPIIIKAAL 28 (71)
T ss_dssp CSSHHHHHHHHHHHCSCEEEEEST
T ss_pred CCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 558988765440368559986514
No 44
>>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structural genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} (A:17-98)
Probab=22.34 E-value=68 Score=15.17 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=23.0
Q ss_pred CCCEEEEEEC--C---HHHHHHHHHHCCCCEEEEC
Q ss_conf 6520499819--9---8999999998698489956
Q gi|254780174|r 24 TLQQVKLFFP--S---LEAAEKYASDHGIQYCVIP 53 (78)
Q Consensus 24 t~~qv~L~F~--t---kE~Ai~yA~~~g~~y~V~~ 53 (78)
+...+-|.++ . .++|++|.+.+|+.++|++
T Consensus 46 ~~G~l~l~l~G~~~~~~~~ai~~L~~~~v~vEvi~ 80 (82)
T 3ced_A 46 TVGFLVLHIPYISSVDFGKFEKELIERQVKXEVLR 80 (82)
T ss_dssp EEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 48999999727998999999999998798799936
No 45
>>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:135-206)
Probab=22.09 E-value=69 Score=15.14 Aligned_cols=26 Identities=8% Similarity=0.097 Sum_probs=21.9
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..+.|.++|.++|+..|+...|....
T Consensus 6 ~~v~~~~e~~~~~~~~g~PvViKp~~ 31 (72)
T 2dwc_A 6 MYATTLDELYEACEKIGYPCHTKAIM 31 (72)
T ss_dssp EEESSHHHHHHHHHHHCSSEEEEECC
T ss_pred CCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 34577776210120246741011013
No 46
>>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.80A {Aeropyrum pernix K1} (A:125-168)
Probab=21.92 E-value=55 Score=15.75 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=19.7
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 998199899999999869848995
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVI 52 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~ 52 (78)
-=.|-+.|+|...++++||.+.-.
T Consensus 9 IGp~y~~eeA~~~~~~~gw~~~eD 32 (44)
T 2e9y_A 9 VGPIYGREEAEELSRRYGWVFKRD 32 (44)
T ss_dssp EEEEECHHHHHHHHHHHCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHCCCEECCC
T ss_conf 030220024789986126321355
No 47
>>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=21.51 E-value=71 Score=15.07 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.5
Q ss_pred EEEECCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9981998999999998698489956776
Q gi|254780174|r 29 KLFFPSLEAAEKYASDHGIQYCVIPSCK 56 (78)
Q Consensus 29 ~L~F~tkE~Ai~yA~~~g~~y~V~~p~~ 56 (78)
.+.+.+.++|..++++-|+++.|.+...
T Consensus 28 ~~~~~~~~e~~~~~~~lg~PvvvKp~~g 55 (108)
T 2cqy_A 28 DGVVKDAEEAVRIAREIGYPVMIKASAG 55 (108)
T ss_dssp CSCBSSHHHHHHHHHHHCSSEEEEETTS
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 7754410156788751499717875025
No 48
>>1gso_A Protein (glycinamide ribonucleotide synthetase); GAR-SYN, ATP-grAsp, purine de novo biosynthetic pathway, substrate channeling, ligase; 1.60A {Escherichia coli} (A:121-192)
Probab=21.32 E-value=56 Score=15.70 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.6
Q ss_pred EEECCHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98199899999999869848995677
Q gi|254780174|r 30 LFFPSLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 30 L~F~tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
..+.|.|+|.++|+.-|++..|.+..
T Consensus 5 ~~~~~~~e~~~~~~~igyPvVvKP~~ 30 (72)
T 1gso_A 5 QNFTEVEPALAYLREKGAPIVIKADG 30 (72)
T ss_dssp EEESSSSHHHHHHHHHCSSEEEEC--
T ss_pred EEEEEHHHHHHHHHHCCCCEEEECCC
T ss_conf 35630354445665059863642032
No 49
>>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365)
Probab=21.18 E-value=51 Score=15.92 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.0
Q ss_pred HHHHHHHHCCCCEEEECCC
Q ss_conf 9999999869848995677
Q gi|254780174|r 37 AAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 37 ~Ai~yA~~~g~~y~V~~p~ 55 (78)
-=..||+++||.++|++-.
T Consensus 29 mY~~~a~~~g~~~evi~~~ 47 (172)
T 2ihr_1 29 MYTRFAERQGFQVEVVDLT 47 (172)
T ss_dssp HHHHHHHTTTCEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEC
T ss_conf 9999998669848885202
No 50
>>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} (A:650-702)
Probab=20.51 E-value=72 Score=15.02 Aligned_cols=22 Identities=27% Similarity=0.078 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHCCCCEEEECCC
Q ss_conf 9899999999869848995677
Q gi|254780174|r 34 SLEAAEKYASDHGIQYCVIPSC 55 (78)
Q Consensus 34 tkE~Ai~yA~~~g~~y~V~~p~ 55 (78)
|+.+|+.+++..|+...+.-.-
T Consensus 6 s~~da~~~~~~~gl~v~~~G~G 27 (53)
T 1qme_A 6 TKETAETLAKWLNIELEFQGSG 27 (53)
T ss_dssp BHHHHHHHHHHHTCEEEEESSS
T ss_pred CHHHHHHHHHHCCCEEEEEEEE
T ss_conf 7999999999779879999500
No 51
>>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2} (A:)
Probab=20.16 E-value=76 Score=14.89 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHCCC-CEEEECCCC
Q ss_conf 998999999998698-489956776
Q gi|254780174|r 33 PSLEAAEKYASDHGI-QYCVIPSCK 56 (78)
Q Consensus 33 ~tkE~Ai~yA~~~g~-~y~V~~p~~ 56 (78)
.|.++|++||.|.|= -++.=++..
T Consensus 87 gs~~~~~~Yc~Keg~~i~E~G~~~~ 111 (115)
T 2hw0_A 87 GTDQQNKEYCSKEGNLLMECGAPRS 111 (115)
T ss_dssp SCHHHHHHHHHTTSCEEEEEECCCC
T ss_pred CCHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 9989999983189934965165378
Done!