RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >gnl|CDD|113566 pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region. Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein. Length = 101 Score = 56.4 bits (136), Expect = 2e-09 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 2 LEFEKITPPYIEPLLGYTSSKDTL-QQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQK 60 LEF++ + + PL+G+TS+ D L Q++L FP+ EAA +A G +Y V K Sbjct: 25 LEFDR-SARWENPLMGWTSTGDPLSNQMELTFPTKEAAIAFAERQGWEYDVEEPNAPKAK 83 Query: 61 ELSYQRNFSYDRLEPWTH 78 +Y NFS++R Sbjct: 84 PKAYSDNFSWNRRTRLEV 101 >gnl|CDD|38599 KOG3389, KOG3389, KOG3389, NADH:ubiquinone oxidoreductase, NDUFS4/18 kDa subunit [Energy production and conversion]. Length = 178 Score = 37.0 bits (85), Expect = 0.001 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 14 PLLGYTSSKDTLQQVK--LFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYD 71 PL+G+TS+ D L V L F + E A+ +A +G Y V K SY NFS++ Sbjct: 111 PLMGWTSTADPLSNVGMALAFDTKEDAKSFAEKNGWDYDVEEPNTPKLKVKSYGDNFSWN 170 Query: 72 R 72 Sbjct: 171 G 171 >gnl|CDD|107250 cd01537, PBP1_Repressors_Sugar_Binding_like, Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangements may have originated from a common ancestor. Length = 264 Score = 29.3 bits (66), Expect = 0.22 Identities = 10/34 (29%), Positives = 17/34 (50%) Query: 35 LEAAEKYASDHGIQYCVIPSCKESQKELSYQRNF 68 L+ E+ A G Q + S +++K+LS N Sbjct: 18 LKGIEEAAKAAGYQVLLANSQNDAEKQLSALENL 51 >gnl|CDD|146062 pfam03243, MerB, Alkylmercury lyase. Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. Length = 128 Score = 27.3 bits (61), Expect = 1.1 Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 31 FFPSLEAAEKYASDHGI 47 FF S EAAE + S H Sbjct: 89 FFASEEAAEAWLSTHPE 105 >gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 680 Score = 24.2 bits (52), Expect = 8.0 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 8/53 (15%) Query: 24 TLQQVKLFFPSLEAAEKYASDHGIQYCVIP------SCKESQKELSYQRNFSY 70 +++ FP LEA +Y +Y P +E +K++ Y R F Sbjct: 518 VGKRLHPEFPYLEAEVRYGVVR--EYACTPVDVIARRLREKKKQIEYARTFLN 568 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.317 0.133 0.406 Gapped Lambda K H 0.267 0.0625 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 967,986 Number of extensions: 37781 Number of successful extensions: 95 Number of sequences better than 10.0: 1 Number of HSP's gapped: 93 Number of HSP's successfully gapped: 7 Length of query: 78 Length of database: 6,263,737 Length adjustment: 48 Effective length of query: 30 Effective length of database: 5,226,505 Effective search space: 156795150 Effective search space used: 156795150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (23.6 bits)