RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780174|ref|YP_003064587.1| putative oxidoreductase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with
           unknown function ATU1810, ontario centre for structural
           proteomics; NMR {Agrobacterium tumefaciens str} (A:)
          Length = 106

 Score =  105 bits (265), Expect = 2e-24
 Identities = 38/78 (48%), Positives = 52/78 (66%)

Query: 1   MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQK 60
           +LEF+   P  I+P++GYTSS D  QQVKL F + E AE YA   GI+Y VI   + ++K
Sbjct: 27  VLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRK 86

Query: 61  ELSYQRNFSYDRLEPWTH 78
            +SY  NF ++R +PWTH
Sbjct: 87  VVSYTDNFRFNRTQPWTH 104


>1t57_A Conserved protein MTH1675; structural genomics, FMN,
          methanobacterium thermoautotrophicum, PSI; HET: FMN;
          2.30A {Methanothermobacterthermautotrophicus} (A:)
          Length = 206

 Score = 28.2 bits (63), Expect = 0.38
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 35 LEAAEKYASDHGIQYCVIPSCK 56
          LE   + A   GI+  V+ S  
Sbjct: 40 LELVGERADQLGIRNFVVASVS 61


>3fkq_A NTRC-like two-domain protein; RER070207001320, structural
          genomics, joint center for structural genomics, JCSG,
          protein structure initiative; HET: ATP 2PE; 2.10A
          {Eubacterium rectale} (A:1-138)
          Length = 138

 Score = 25.2 bits (55), Expect = 3.6
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 11 YIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVI 52
          Y++ L G  ++K   +     F   + A +   ++ I   + 
Sbjct: 33 YLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYRIDVLIA 74


>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury
           resistance, mercuric resistance, plasmid; 1.78A
           {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A
           3f0p_A 3f2f_A (A:)
          Length = 220

 Score = 24.8 bits (54), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 31  FFPSLEAAEKYASDH 45
           FF S+  AE +AS H
Sbjct: 164 FFASVPTAEDWASKH 178


>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET:
          DNA 5IU; 2.10A {Homo sapiens} (A:)
          Length = 53

 Score = 23.4 bits (51), Expect = 9.7
 Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 7/36 (19%)

Query: 18 YTSSKDTLQQVKLF-------FPSLEAAEKYASDHG 46
          + +  +   QV  F       F + + A  +     
Sbjct: 17 FLTWNECRAQVDRFPAARFKKFATEDEAWAFVRKSA 52


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.317    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 593,425
Number of extensions: 20378
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 4,956,049
Length adjustment: 43
Effective length of query: 35
Effective length of database: 3,502,434
Effective search space: 122585190
Effective search space used: 122585190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)