BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780174|ref|YP_003064587.1| putative oxidoreductase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 78

 Score =  163 bits (413), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQK 60
          MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQK
Sbjct: 1  MLEFEKITPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQK 60

Query: 61 ELSYQRNFSYDRLEPWTH 78
          ELSYQRNFSYDRLEPWTH
Sbjct: 61 ELSYQRNFSYDRLEPWTH 78


>537021.9.peg.233_1 
          Length = 72

 Score = 24.3 bits (51), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 10/48 (20%), Positives = 22/48 (45%)

Query: 8  TPPYIEPLLGYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSC 55
          TPP   P +  ++++     V + F  ++       ++GI   +I +C
Sbjct: 9  TPPKAHPNILSSNTERIRIGVLIIFNKIDTTVNIIKNNGIIVIIIATC 56


>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 23.5 bits (49), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%)

Query: 17  GYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYDRLEP 75
           G  + +D  +Q  LF  +    + Y  D G+   V      S +     R FS+ +  P
Sbjct: 74  GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,846
Number of Sequences: 1233
Number of extensions: 1594
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 328,796
effective HSP length: 48
effective length of query: 30
effective length of database: 269,612
effective search space:  8088360
effective search space used:  8088360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 31 (16.5 bits)