Query gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 38
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Mon May 23 08:27:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780175.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2rm9_A Astressin2B; CRF ligan 41.2 4.9 0.00014 20.4 -0.7 20 6-25 14-33 (34)
2 >1kjn_A MTH0777; hypotethical 12.4 86 0.0025 14.2 1.1 18 16-33 140-157 (157)
3 >3kxr_A Magnesium transporter, 7.5 1.2E+02 0.0034 13.5 0.3 14 1-14 29-42 (52)
4 >1vz0_A PARB, chromosome parti 7.3 1.5E+02 0.0043 13.0 0.7 17 3-19 4-20 (59)
5 >2fok_A R.FOKI, FOKI restricti 5.8 1.5E+02 0.0044 13.0 0.1 11 8-18 77-87 (168)
6 >2gfh_A Haloacid dehalogenase- 5.7 2E+02 0.0059 12.3 0.7 11 18-28 19-29 (34)
7 >2vcp_D N-WAsp, neural wiskott 5.6 2.3E+02 0.0069 12.0 1.1 12 15-26 12-23 (93)
8 >3f4y_D Mutant peptide derived 5.4 1.5E+02 0.0045 12.9 -0.0 13 11-23 26-38 (40)
9 >3bpq_A RELB; protein toxin-an 5.2 1.9E+02 0.0057 12.4 0.4 14 23-37 26-39 (52)
10 >1r71_A Transcriptional repres 5.0 2.4E+02 0.007 12.0 0.7 15 5-19 23-37 (76)
No 1
>>2rm9_A Astressin2B; CRF ligand, sauvagine, urocortins, urotensins, CRF receptors, neuropeptide; HET: DPN 2ML NLE; NMR {Synthetic} (A:)
Probab=41.21 E-value=4.9 Score=20.39 Aligned_cols=20 Identities=50% Similarity=0.577 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88867666566789999999
Q gi|254780175|r 6 KAQIKENQQRDNHKALLASI 25 (38)
Q Consensus 6 kaqikenqqrdnhkallasi 25 (38)
..|-||.||..|.|-||..|
T Consensus 14 ekqekekqqaennkllld~i 33 (34)
T 2rm9_A 14 EKQEKEKQQAENNKLLLDXI 33 (34)
T ss_dssp HHHHSSSSSSTTTHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHC
T ss_conf 99888898876244257514
No 2
>>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} (A:)
Probab=12.40 E-value=86 Score=14.16 Aligned_cols=18 Identities=33% Similarity=0.432 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 678999999999974454
Q gi|254780175|r 16 DNHKALLASIDKVMSEKT 33 (38)
Q Consensus 16 dnhkallasidkvmsekt 33 (38)
.|-..|.-.||+||+||.
T Consensus 140 HNP~pl~~kldkv~~e~~ 157 (157)
T 1kjn_A 140 HNPAPLRVRIDRFXEEKP 157 (157)
T ss_dssp SCCHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 586879999999851599
No 3
>>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural genomics, PSI-2; 2.41A {Shewanella oneidensis mr-1} (A:1-52)
Probab=7.53 E-value=1.2e+02 Score=13.50 Aligned_cols=14 Identities=50% Similarity=0.449 Sum_probs=9.8
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 92478888676665
Q gi|254780175|r 1 MTDIAKAQIKENQQ 14 (38)
Q Consensus 1 mtdiakaqikenqq 14 (38)
|+|.|-+|..+.|.
T Consensus 29 l~DrAL~qM~~rQR 42 (52)
T 3kxr_A 29 FTDRALAQXGERQR 42 (52)
T ss_dssp HHHHHHHHSCHHHH
T ss_pred HHHHHHHCCCHHHH
T ss_conf 99999981999999
No 4
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=7.27 E-value=1.5e+02 Score=13.02 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 47888867666566789
Q gi|254780175|r 3 DIAKAQIKENQQRDNHK 19 (38)
Q Consensus 3 diakaqikenqqrdnhk 19 (38)
+...+++-||-||.+..
T Consensus 4 ~a~~~~l~EN~qR~dl~ 20 (59)
T 1vz0_A 4 EALELALVENLQREDLS 20 (59)
T ss_dssp HHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 89999999986605899
No 5
>>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} (A:412-579)
Probab=5.83 E-value=1.5e+02 Score=12.99 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=6.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 86766656678
Q gi|254780175|r 8 QIKENQQRDNH 18 (38)
Q Consensus 8 qikenqqrdnh 18 (38)
-|.|||+||.|
T Consensus 77 Yi~en~~R~e~ 87 (168)
T 2fok_A 77 YVEENQTRNKH 87 (168)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHCCCCCCC
T ss_conf 99850354444
No 6
>>2gfh_A Haloacid dehalogenase-like hydrolase domain containing 4; 17391249, protein C20ORF147 homolog, structural genomics, PSI; 1.90A {Mus musculus} (A:1-17,A:244-260)
Probab=5.68 E-value=2e+02 Score=12.31 Aligned_cols=11 Identities=55% Similarity=0.428 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q gi|254780175|r 18 HKALLASIDKV 28 (38)
Q Consensus 18 hkallasidkv 28 (38)
-.|||.|||--
T Consensus 19 lpallqsidck 29 (34)
T 2gfh_A 19 LPALLQSIDCK 29 (34)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHHH
T ss_conf 99999997033
No 7
>>2vcp_D N-WAsp, neural wiskott-aldrich syndrome protein; actin-binding, transcription, muscle protein, nucleotide-binding, transcription regulation; HET: HIC ATP; 3.2A {Homo sapiens} (D:)
Probab=5.60 E-value=2.3e+02 Score=11.98 Aligned_cols=12 Identities=42% Similarity=0.487 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 667899999999
Q gi|254780175|r 15 RDNHKALLASID 26 (38)
Q Consensus 15 rdnhkallasid 26 (38)
.|+|.+||++|-
T Consensus 12 ~~~~~~lL~~Ir 23 (93)
T 2vcp_D 12 AGNKAALLDQIR 23 (93)
T ss_pred CCCHHHHHHHHH
T ss_conf 888999999998
No 8
>>3f4y_D Mutant peptide derived from HIV GP41 CHR domain; helix bundle, AIDS, apoptosis, cell membrane, cleavage on PAIR of basic residues, coiled coil; 2.00A {Synthetic} PDB: 3f4z_A* 3f50_B* (D:)
Probab=5.44 E-value=1.5e+02 Score=12.92 Aligned_cols=13 Identities=38% Similarity=0.435 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6665667899999
Q gi|254780175|r 11 ENQQRDNHKALLA 23 (38)
Q Consensus 11 enqqrdnhkalla 23 (38)
.+||-.|-+.||+
T Consensus 26 Q~QQEkNe~eLle 38 (40)
T 3f4y_D 26 QEQQEKNEAALRE 38 (40)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899984999874
No 9
>>3bpq_A RELB; protein toxin-antitoxin complex; 2.20A {Methanococcus jannaschii} (A:)
Probab=5.19 E-value=1.9e+02 Score=12.40 Aligned_cols=14 Identities=57% Similarity=0.790 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999744543016
Q gi|254780175|r 23 ASIDKVMSEKTKDDE 37 (38)
Q Consensus 23 asidkvmsektkdde 37 (38)
...-|.| |.|||||
T Consensus 26 i~l~kam-eetkdde 39 (52)
T 3bpq_A 26 IGLAKAM-EETKDDE 39 (52)
T ss_dssp HHHHHHH-HTTTTCC
T ss_pred HHHHHHH-HHCCCCH
T ss_conf 9999998-8615503
No 10
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=5.04 E-value=2.4e+02 Score=11.96 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 888867666566789
Q gi|254780175|r 5 AKAQIKENQQRDNHK 19 (38)
Q Consensus 5 akaqikenqqrdnhk 19 (38)
..+|+-||-||.+-.
T Consensus 23 ~~~~l~EN~~R~~ls 37 (76)
T 1r71_A 23 EADQVIENLQRNELT 37 (76)
T ss_dssp CCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHCCCCCC
T ss_conf 699999986506899
Done!