BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780175|ref|YP_003064588.1| hypothetical protein
CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62]
         (38 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 38

 Score = 75.9 bits (185), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/38 (100%), Positives = 38/38 (100%)

Query: 1  MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN 38
          MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN
Sbjct: 1  MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN 38


>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score = 22.7 bits (47), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 17  NHKALLASIDKVMSEKTKDDE 37
           N+K LL  ID + S++  DDE
Sbjct: 325 NYKYLLEIIDNISSDEVVDDE 345


>gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 210

 Score = 20.8 bits (42), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 1   MTDIAKAQIKENQQRDNHKALL 22
           +  +A+AQI+E  QRD    LL
Sbjct: 83  IVSMAQAQIQEKLQRDEQDDLL 104


>gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 42

 Score = 20.0 bits (40), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 7  AQIKEN--QQRDNHKALLASIDKVMSEK 32
          ++I EN  ++ D H  +L  +DKV  EK
Sbjct: 11 SEIAENKAERIDKHNIILVVLDKVKKEK 38


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.303    0.118    0.295 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,607
Number of Sequences: 1233
Number of extensions: 346
Number of successful extensions: 5
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 38
length of database: 328,796
effective HSP length: 12
effective length of query: 26
effective length of database: 314,000
effective search space:  8164000
effective search space used:  8164000
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 31 (16.5 bits)