BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62] (38 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780175|ref|YP_003064588.1| hypothetical protein CLIBASIA_00290 [Candidatus Liberibacter asiaticus str. psy62] Length = 38 Score = 75.9 bits (185), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 38/38 (100%), Positives = 38/38 (100%) Query: 1 MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN 38 MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN Sbjct: 1 MTDIAKAQIKENQQRDNHKALLASIDKVMSEKTKDDEN 38 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 22.7 bits (47), Expect = 1.3, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 17 NHKALLASIDKVMSEKTKDDE 37 N+K LL ID + S++ DDE Sbjct: 325 NYKYLLEIIDNISSDEVVDDE 345 >gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 20.8 bits (42), Expect = 4.0, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 1 MTDIAKAQIKENQQRDNHKALL 22 + +A+AQI+E QRD LL Sbjct: 83 IVSMAQAQIQEKLQRDEQDDLL 104 >gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62] Length = 42 Score = 20.0 bits (40), Expect = 8.4, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Query: 7 AQIKEN--QQRDNHKALLASIDKVMSEK 32 ++I EN ++ D H +L +DKV EK Sbjct: 11 SEIAENKAERIDKHNIILVVLDKVKKEK 38 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.303 0.118 0.295 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 19,607 Number of Sequences: 1233 Number of extensions: 346 Number of successful extensions: 5 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5 length of query: 38 length of database: 328,796 effective HSP length: 12 effective length of query: 26 effective length of database: 314,000 effective search space: 8164000 effective search space used: 8164000 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 31 (16.5 bits)