Query gi|254780176|ref|YP_003064589.1| hypothetical protein CLIBASIA_00295 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 119
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 23 01:33:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780176.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ad6_B Methanol dehydrogenase 5.0 1.5E+02 0.0065 11.0 1.1 31 44-77 22-53 (69)
2 1w6s_B Methanol dehydrogenase 4.6 1.6E+02 0.0069 10.9 1.1 31 44-77 22-53 (74)
3 1lrw_B Methanol dehydrogenase 4.6 1.6E+02 0.0069 10.9 1.1 31 44-77 22-53 (83)
4 1v5r_A Growth-arrest-specific 4.2 1.8E+02 0.0075 10.7 1.4 32 33-64 22-54 (97)
5 1vpu_A VPU protein, VPU(39-81) 4.0 59 0.0025 13.1 -2.3 13 18-30 12-24 (45)
6 2wwb_M 60S ribosomal protein L 2.7 1.9E+02 0.0079 10.6 -0.7 29 82-110 74-106 (113)
7 3oiq_B DNA polymerase alpha ca 2.7 2E+02 0.0083 10.5 -0.6 26 82-112 8-33 (36)
8 1vr7_A Adometdc, samdc, S-aden 2.6 2.7E+02 0.011 9.8 2.2 56 25-80 86-142 (142)
9 1lts_C Heat-labIle enterotoxin 2.5 2.3E+02 0.0095 10.2 -0.5 9 23-31 29-37 (41)
10 2khk_A ATP synthase subunit B; 2.4 2.9E+02 0.012 9.6 0.7 19 3-21 24-42 (53)
No 1
>2ad6_B Methanol dehydrogenase subunit 2; PQQ configuration, native, oxidoreductase; HET: PQQ; 1.50A {Methylophilus methylotrophus W3A1} SCOP: a.137.2.1 PDB: 1g72_B* 2ad7_B* 2ad8_B* 4aah_B*
Probab=4.99 E-value=1.5e+02 Score=11.02 Aligned_cols=31 Identities=42% Similarity=0.636 Sum_probs=19.4
Q ss_pred EEHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHH
Q ss_conf 00010110012056556100-01355555544432
Q gi|254780176|r 44 RIAEAKYKYRSDIVMAIEKS-KADAIKTMEDRKAK 77 (119)
Q Consensus 44 riaeakykyrsdivmaieks-kadaiktmedrkak 77 (119)
.|+-.||.-..|-. |-+ ...+|+.||.|.++
T Consensus 22 kiaGsKYDPkhdp~---EL~kQ~~si~~me~RN~k 53 (69)
T 2ad6_B 22 KIAGSKYDPKHDPV---ELNKQEESIKAMDARNAK 53 (69)
T ss_dssp CCTTSTTCCCCCHH---HHTHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf 30377679888989---997899999999998899
No 2
>1w6s_B Methanol dehydrogenase subunit 2; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: a.137.2.1 PDB: 1h4j_B* 1h4i_B* 2d0v_B*
Probab=4.64 E-value=1.6e+02 Score=10.88 Aligned_cols=31 Identities=45% Similarity=0.634 Sum_probs=19.3
Q ss_pred EEHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHH
Q ss_conf 00010110012056556100-01355555544432
Q gi|254780176|r 44 RIAEAKYKYRSDIVMAIEKS-KADAIKTMEDRKAK 77 (119)
Q Consensus 44 riaeakykyrsdivmaieks-kadaiktmedrkak 77 (119)
.|+-.||.-..|-. |-+ ..++|+.||.|.++
T Consensus 22 kiaGsKYDPkHdp~---EL~KQ~~si~ame~RN~k 53 (74)
T 1w6s_B 22 KIAGSKYDPKHDPK---ELNKQADSIKQMEERNKK 53 (74)
T ss_dssp CCTTSTTCCCCCHH---HHTHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf 30377679888989---997889999999998899
No 3
>1lrw_B Methanol dehydrogenase subunit 2; heavy subunits: 8-fold beta-propeller superbarrel, oxidoreductase; HET: PQQ; 2.50A {Paracoccus denitrificans} SCOP: a.137.2.1
Probab=4.59 E-value=1.6e+02 Score=10.86 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=19.3
Q ss_pred EEHHHCCCCCCCEEEEEECC-CHHHHHHHHHHHHH
Q ss_conf 00010110012056556100-01355555544432
Q gi|254780176|r 44 RIAEAKYKYRSDIVMAIEKS-KADAIKTMEDRKAK 77 (119)
Q Consensus 44 riaeakykyrsdivmaieks-kadaiktmedrkak 77 (119)
.|+-.||.-..|-. |-+ ..++|+.||.|.++
T Consensus 22 kiaGsKYDPkHdp~---EL~KQ~~sikame~RN~k 53 (83)
T 1lrw_B 22 KVEGSKYDPQHDPA---ELSKQGESLAVMDARNEW 53 (83)
T ss_dssp CCTTSTTCCCCCHH---HHTHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf 20367679888989---997899999999998899
No 4
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=4.19 E-value=1.8e+02 Score=10.70 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=22.2
Q ss_pred ECCCCCCHHHEEEHHHCCCCCCCEEE-EEECCC
Q ss_conf 03564401200000101100120565-561000
Q gi|254780176|r 33 RSNAKDKTDLVRIAEAKYKYRSDIVM-AIEKSK 64 (119)
Q Consensus 33 rsnakdktdlvriaeakykyrsdivm-aieksk 64 (119)
+.+...+-.+.|+.|.+|++-+.+++ -|.+++
T Consensus 22 ~C~C~~~f~i~ri~eGkY~~G~k~i~vRilr~~ 54 (97)
T 1v5r_A 22 PCKCPTKFCVERLSQGRYRVGEKILFIRMLHNK 54 (97)
T ss_dssp CCCSSSCCCEEEEETTEEEETTEEEEEEEETTT
T ss_pred CCCCCCCCCEEEECCCCEEECCEEEEEEEECCC
T ss_conf 876888636599438818888899999996798
No 5
>1vpu_A VPU protein, VPU(39-81); HIV, AIDS; NMR {Human immunodeficiency virus 1} SCOP: g.34.1.1 PDB: 2k7y_A
Probab=3.96 E-value=59 Score=13.07 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=7.8
Q ss_pred HHHCCCCCEEEEE
Q ss_conf 2101368701465
Q gi|254780176|r 18 AKAKDSGNQAEID 30 (119)
Q Consensus 18 akakdsgnqaeid 30 (119)
-.|.||||..+-|
T Consensus 12 eRAEDSGNESeGD 24 (45)
T 1vpu_A 12 ERAEDSGNESEGD 24 (45)
T ss_dssp HTTCHHHHTTTTH
T ss_pred HHCCCCCCCCCCC
T ss_conf 8602577778556
No 6
>2wwb_M 60S ribosomal protein L31-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_M 2ww9_M 1s1i_W
Probab=2.73 E-value=1.9e+02 Score=10.57 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=17.7
Q ss_pred HHHHHHHHCCCCE----EEEEEEEECCCEEEEE
Q ss_conf 5543200012411----4676653125224540
Q gi|254780176|r 82 RQERKANESKDAA----TIITTATVENTKVVET 110 (119)
Q Consensus 82 rqerkaneskdaa----tiittatventkvvet 110 (119)
|-.||.||..|+. |++|-..|.+-|-..|
T Consensus 74 r~~Rk~nedEd~~~klytlVt~v~V~sfk~L~t 106 (113)
T 2wwb_M 74 RISRKRNEEEDAKNPLFSYVEPVLVASAKGLQT 106 (113)
T ss_dssp EECCCSSCSTTCCCCEECC--------------
T ss_pred EEEEECCCCCCCCCCCEEEEEEEECCCCCCCEE
T ss_conf 998752666578544189999876588778665
No 7
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=2.68 E-value=2e+02 Score=10.47 Aligned_cols=26 Identities=46% Similarity=0.539 Sum_probs=14.3
Q ss_pred HHHHHHHHCCCCEEEEEEEEECCCEEEEEHH
Q ss_conf 5543200012411467665312522454022
Q gi|254780176|r 82 RQERKANESKDAATIITTATVENTKVVETKE 112 (119)
Q Consensus 82 rqerkaneskdaatiittatventkvvetke 112 (119)
|.-|-||.-.|-- ..|||..||.||.
T Consensus 8 rklryandvqdll-----ddvenspvvatkr 33 (36)
T 3oiq_B 8 RKLRYANDVQDLL-----DDVENSPVVATKR 33 (36)
T ss_dssp HHHHHHHHHHHHH-----HHHHHSCSBCC--
T ss_pred HHHHHHHHHHHHH-----HHHCCCCCEEECC
T ss_conf 7767540299998-----7420586023303
No 8
>1vr7_A Adometdc, samdc, S-adenosylmethionine decarboxylase proenzyme; TM0655, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.156.1.2 PDB: 1tlu_A 1tmi_A 3iwc_A* 3iwb_A* 3iwd_A* 3iwc_B* 3iwb_B* 3iwd_B*
Probab=2.60 E-value=2.7e+02 Score=9.79 Aligned_cols=56 Identities=23% Similarity=0.200 Sum_probs=25.7
Q ss_pred CEEEEEEEECCC-CCCHHHEEEHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 701465430356-44012000001011001205655610001355555544432101
Q gi|254780176|r 25 NQAEIDIARSNA-KDKTDLVRIAEAKYKYRSDIVMAIEKSKADAIKTMEDRKAKVGV 80 (119)
Q Consensus 25 nqaeidiarsna-kdktdlvriaeakykyrsdivmaiekskadaiktmedrkakvgv 80 (119)
+.+-+||--.+. -|....+.....-++-..--+.-+.....+.|+-.+|.+.+++|
T Consensus 86 ~~a~iDifsC~~~~~p~~~~~~l~~~F~~~~~~~~~~~RG~~~~i~~~~d~~~~~~~ 142 (142)
T 1vr7_A 86 GYAAIDLFTCGEDVDPWKAFEHLKKALKAKRVHVVEHERGRYDEIGIPEDSPHKAAV 142 (142)
T ss_dssp TEEEEEEEEESTTCCHHHHHHHHHHHHTCSEEEEEEEEEEEHHHHTCC---------
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 838999981799899999999999972998599999958995435677779876679
No 9
>1lts_C Heat-labIle enterotoxin, subunit A; 1.95A {Escherichia coli} SCOP: d.166.1.1 PDB: 1ltt_C* 1ltb_C
Probab=2.52 E-value=2.3e+02 Score=10.18 Aligned_cols=9 Identities=56% Similarity=0.745 Sum_probs=0.0
Q ss_pred CCCEEEEEE
Q ss_conf 687014654
Q gi|254780176|r 23 SGNQAEIDI 31 (119)
Q Consensus 23 sgnqaeidi 31 (119)
||-|.+||+
T Consensus 29 s~yqsdid~ 37 (41)
T 1lts_C 29 SDYQSEVDI 37 (41)
T ss_dssp GGGCCCCCH
T ss_pred HCCHHCCHH
T ss_conf 021100022
No 10
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, cell inner membrane, cell membrane, CF(0), hydrogen ION transport; NMR {Escherichia coli k-12}
Probab=2.45 E-value=2.9e+02 Score=9.64 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHC
Q ss_conf 0122232211134432101
Q gi|254780176|r 3 ELETAQAEADAKIAEAKAK 21 (119)
Q Consensus 3 eletaqaeadakiaeakak 21 (119)
+|+.+|.++...+.++|.+
T Consensus 24 ~Le~A~~~~~~~l~eAK~~ 42 (53)
T 2khk_A 24 DLDLAKASATDQLKKAKAE 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
Done!