RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780176|ref|YP_003064589.1| hypothetical protein
CLIBASIA_00295 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>gnl|CDD|179919 PRK05035, PRK05035, electron transport complex protein RnfC;
           Provisional.
          Length = 695

 Score = 34.5 bits (80), Expect = 0.007
 Identities = 26/99 (26%), Positives = 39/99 (39%)

Query: 8   QAEADAKIAEAKAKDSGNQAEIDIARSNAKDKTDLVRIAEAKYKYRSDIVMAIEKSKADA 67
           +A   A IA AKAK +  QA    A      K   V  A A+ K +     A      + 
Sbjct: 547 KAAVAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQ 606

Query: 68  IKTMEDRKAKVGVARQERKANESKDAATIITTATVENTK 106
           +  ++ +KA V  A    KA +++  A       V+  K
Sbjct: 607 VAEVDPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRK 645



 Score = 25.3 bits (56), Expect = 4.5
 Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 1/104 (0%)

Query: 3   ELETAQAEADAKIAEAKAKDSGNQAEIDIARSNAKDKTDLVRIAEAKYKYRSDIVMAIEK 62
           E++  +A   A IA AKAK +  Q            + D  + A A    R+    A ++
Sbjct: 574 EVDPKKAAVAAAIARAKAKKA-AQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQ 632

Query: 63  SKADAIKTMEDRKAKVGVARQERKANESKDAATIITTATVENTK 106
           + A+  + ++ RKA V  A    KA ++            E+ K
Sbjct: 633 ANAEPEEPVDPRKAAVAAAIARAKARKAAQQQANAEPEEAEDPK 676


>gnl|CDD|184222 PRK13665, PRK13665, hypothetical protein; Provisional.
          Length = 316

 Score = 31.8 bits (73), Expect = 0.043
 Identities = 13/19 (68%), Positives = 17/19 (89%)

Query: 2   AELETAQAEADAKIAEAKA 20
           A+L+T QAEAD +IA+AKA
Sbjct: 232 AKLQTDQAEADKRIAQAKA 250


>gnl|CDD|152562 pfam12127, YdfA_immunity, SigmaW regulon antibacterial.  This
           protein is found in bacteria. Proteins in this family
           are about 330 amino acids in length. The operon from
           which this protein is derived confers immunity for the
           host species to a broad range of antibacterial
           compounds, unlike the specific immunity proteins that
           are linked to and co-regulated with their
           antibiotic-synthesis proteins.
          Length = 321

 Score = 28.8 bits (65), Expect = 0.30
 Identities = 13/19 (68%), Positives = 16/19 (84%)

Query: 2   AELETAQAEADAKIAEAKA 20
           A L+T QAEAD +IA+AKA
Sbjct: 231 ARLQTDQAEADKRIAQAKA 249


>gnl|CDD|161925 TIGR00553, pabB, aminodeoxychorismate synthase, component I,
           bacterial clade.  Members of this family,
           aminodeoxychorismate synthase, component I (PabB), were
           designated para-aminobenzoate synthase component I until
           it was recognized that PabC, a lyase, completes the
           pathway of PABA synthesis. This family is closely
           related to anthranilate synthase component I (trpE), and
           both act on chorismate. The clade of PabB enzymes
           represented by this model includes sequences from
           Gram-positive and alpha and gamma Proteobacteria as well
           as Chlorobium, Nostoc, Fusobacterium and Arabidopsis. A
           closely related clade of fungal PabB enzymes is
           identified by TIGR01823, while another bacterial clade
           of potential PabB enzymes is more closely related to
           TrpE (TIGR01824).
          Length = 328

 Score = 27.3 bits (61), Expect = 1.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 10/46 (21%)

Query: 7   AQAEADAKIAEAKAKDSGNQAE----IDIARSNAKDKTDLVRIAEA 48
           A  + D   A A A+ + ++AE    +D+ R+      DL RIAE 
Sbjct: 162 ADPQEDRAQASALAESAKDRAENLMIVDLLRN------DLGRIAEV 201


>gnl|CDD|181007 PRK07508, PRK07508, aminodeoxychorismate synthase; Provisional.
          Length = 378

 Score = 25.7 bits (57), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 10/45 (22%)

Query: 7   AQAEADAKIAEAKAKDSGNQAE----IDIARSNAKDKTDLVRIAE 47
           A    DA++  A   D  NQAE    +D+ R+      D+ RI+E
Sbjct: 203 ATPAEDARLRAALLNDEKNQAENRMIVDLLRN------DISRISE 241


>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
          Length = 2084

 Score = 25.5 bits (55), Expect = 3.1
 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 8    QAEADAKIAEAKAKDSGNQAEIDIARSNAKDKTDLVRIAEAKYKYRSDIVMAIEKSKADA 67
            +AE   K  EAK K    + + D A+  A++       A+A+ +  +D   A E+    A
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA 1369

Query: 68   IKTMEDRKAKVGVARQERKANESKDAATIITTATVENTKVVETKEA 113
             K  E+ K K   A+  +KA E K A      A  +  K  E K+A
Sbjct: 1370 EKKKEEAKKKADAAK--KKAEEKKKADEAKKKAEEDKKKADELKKA 1413


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 24.5 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 2   AELETAQAEADAKIAEAKA 20
           A+LE   AE D   AEA+A
Sbjct: 117 ADLEVKFAEMDGYTAEARA 135


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.302    0.116    0.279 

Gapped
Lambda     K      H
   0.267   0.0564    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,627,733
Number of extensions: 91538
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 97
Length of query: 119
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 38
Effective length of database: 4,244,225
Effective search space: 161280550
Effective search space used: 161280550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 51 (23.8 bits)