RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780176|ref|YP_003064589.1| hypothetical protein
CLIBASIA_00295 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>2rfw_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycosidase;
           1.60A {Melanocarpus albomyces} PDB: 2rfy_A* 2rfz_A*
           2rg0_A* (A:1-37,A:78-164,A:206-430)
          Length = 349

 Score = 24.5 bits (53), Expect = 4.7
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 3/39 (7%)

Query: 2   AELETAQAEADAKIAE---AKAKDSGNQAEIDIARSNAK 37
           + L     E D  +A     +A      AEID+  SNA 
Sbjct: 102 SALYFVAMEEDGGMASYPSNQAGYGSCCAEIDVWESNAY 140


>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
           (A:112-185)
          Length = 74

 Score = 24.0 bits (52), Expect = 6.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 88  NESKDAATIITTATVENTKVVETKEAGKTARS 119
            ++ ++ T IT  TV + K +++K  G  A S
Sbjct: 32  PKTMESGTFITDKTVLDMKAMDSKSNGAIAWS 63


>1mwa_A 2C alpha chain, 2C T cell receptor alpha chain; IG domain,
           antigen recognition, complementarity determining region,
           immune system; HET: NAG BMA; 2.40A {Mus musculus}
           (A:115-202)
          Length = 88

 Score = 23.7 bits (51), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 88  NESKDAATIITTATVENTKVVETKEAGKTARS 119
            ++ ++ T IT ATV + K +++K  G  A S
Sbjct: 32  PKTMESGTFITDATVLDMKAMDSKSNGAIAWS 63


>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition,
           innate immunity, immune system; HET: NAG BMA MAN FUC;
           1.85A {Mus musculus} PDB: 3he7_C* 3he6_C* (A:114-229)
          Length = 116

 Score = 23.6 bits (51), Expect = 9.9
 Identities = 9/31 (29%), Positives = 17/31 (54%)

Query: 89  ESKDAATIITTATVENTKVVETKEAGKTARS 119
           ++ ++ T IT   V + K +++K  G  A S
Sbjct: 33  KTMESGTFITDKCVLDMKAMDSKSNGAIAWS 63


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.302    0.116    0.279 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 679,387
Number of extensions: 24543
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 16
Length of query: 119
Length of database: 4,956,049
Length adjustment: 71
Effective length of query: 48
Effective length of database: 2,555,894
Effective search space: 122682912
Effective search space used: 122682912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.2 bits)