RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780176|ref|YP_003064589.1| hypothetical protein
CLIBASIA_00295 [Candidatus Liberibacter asiaticus str. psy62]
         (119 letters)



>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
           structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
           pneumoniae M129}
          Length = 348

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 42  LVRIAEAKYKYRSDIVMAI-----EKSKADAIKTMEDRKAKVGVARQERK 86
           LV I   + +   + V         +++A A  T+       G+  Q  K
Sbjct: 299 LVNIQRKREQISREQVFNCLQAGKNQAQATARTTLALFYDGFGLGSQNIK 348


>1un8_A Dihydroxyacetone kinase; glycerone kinase, DHA kinase; HET: MYY;
           2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2
           PDB: 1un9_A*
          Length = 552

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 18  AKAKDSGNQAEIDIARSNAKDKT---DLVRIAEAKYKYRSDIVMAIEKSKADAIKTMEDR 74
            +A ++G         ++  D+T    L     +      ++  A + ++A A +T    
Sbjct: 454 VEALNTGLAQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAERTCLSS 513

Query: 75  KAKVGVARQ--ERKANESKDA 93
           KA  G A          + D 
Sbjct: 514 KANAGRASYLSSESLLGNMDP 534


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.302    0.116    0.279 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 785,980
Number of extensions: 30345
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 21
Length of query: 119
Length of database: 5,693,230
Length adjustment: 80
Effective length of query: 39
Effective length of database: 3,753,710
Effective search space: 146394690
Effective search space used: 146394690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.7 bits)