RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780176|ref|YP_003064589.1| hypothetical protein CLIBASIA_00295 [Candidatus Liberibacter asiaticus str. psy62] (119 letters) >2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129} Length = 348 Score = 25.2 bits (54), Expect = 3.5 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%) Query: 42 LVRIAEAKYKYRSDIVMAI-----EKSKADAIKTMEDRKAKVGVARQERK 86 LV I + + + V +++A A T+ G+ Q K Sbjct: 299 LVNIQRKREQISREQVFNCLQAGKNQAQATARTTLALFYDGFGLGSQNIK 348 >1un8_A Dihydroxyacetone kinase; glycerone kinase, DHA kinase; HET: MYY; 2.5A {Citrobacter freundii} SCOP: a.208.1.1 c.119.1.2 PDB: 1un9_A* Length = 552 Score = 24.9 bits (54), Expect = 4.7 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 18 AKAKDSGNQAEIDIARSNAKDKT---DLVRIAEAKYKYRSDIVMAIEKSKADAIKTMEDR 74 +A ++G ++ D+T L + ++ A + ++A A +T Sbjct: 454 VEALNTGLAQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAERTCLSS 513 Query: 75 KAKVGVARQ--ERKANESKDA 93 KA G A + D Sbjct: 514 KANAGRASYLSSESLLGNMDP 534 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.302 0.116 0.279 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 785,980 Number of extensions: 30345 Number of successful extensions: 87 Number of sequences better than 10.0: 1 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 21 Length of query: 119 Length of database: 5,693,230 Length adjustment: 80 Effective length of query: 39 Effective length of database: 3,753,710 Effective search space: 146394690 Effective search space used: 146394690 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 50 (23.7 bits)