254780177
lipoyltransferase
GeneID in NCBI database: | 8209157 | Locus tag: | CLIBASIA_00300 |
Protein GI in NCBI database: | 254780177 | Protein Accession: | YP_003064590.1 |
Gene range: | +(58120, 58893) | Protein Length: | 257aa |
Gene description: | lipoyltransferase | ||
COG prediction: | [H] Lipoate-protein ligase B | ||
KEGG prediction: | lipB; lipoyltransferase (EC:2.3.1.181); K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181] | ||
SEED prediction: | Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||
Pathway involved in KEGG: | Lipoic acid metabolism [PATH:las00785] | ||
Subsystem involved in SEED: | Lipoic acid metabolism | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | |||
315122776 | 232 | lipoyltransferase [Candidatus Liberibacter solanacearum | 1 | 1e-103 | |
222086076 | 238 | lipoyltransferase [Agrobacterium radiobacter K84] Lengt | 1 | 5e-77 | |
23500333 | 267 | lipoate-protein ligase B [Brucella suis 1330] Length = | 1 | 1e-76 | |
306838999 | 252 | lipoate-protein ligase B [Brucella sp. NF 2653] Length | 1 | 1e-76 | |
254720424 | 267 | lipoyltransferase [Brucella sp. 83/13] Length = 267 | 1 | 1e-76 | |
37079867 | 268 | RecName: Full=Octanoyltransferase; AltName: Full=Lipoat | 1 | 2e-76 | |
294853614 | 252 | octanoyltransferase [Brucella sp. NVSL 07-0026] Length | 1 | 2e-76 | |
148558670 | 267 | lipoate-protein ligase B [Brucella ovis ATCC 25840] Len | 1 | 2e-76 | |
225629083 | 267 | lipoate-protein ligase B [Brucella ceti str. Cudo] Leng | 1 | 2e-76 | |
254711142 | 267 | lipoyltransferase [Brucella pinnipedialis B2/94] Length | 1 | 2e-76 |
>gi|315122776|ref|YP_004063265.1| lipoyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 232 | Back alignment and organism information |
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Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/230 (76%), Positives = 206/230 (89%) Query: 13 MFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72 MFP+E++ P+RWWV + P+ YE+ Q+IMERE+QRI+LG +EELVW+LEHPPLYTSGTSA Sbjct: 1 MFPVESLPPVRWWVTNYPMSYEKCQMIMEREVQRIALGKSEELVWVLEHPPLYTSGTSAN 60 Query: 73 SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLK 132 S DL+SP+ PVY TGRGGGYTYHGPGQRI+Y+MLNLAKR+KDLRCFVAALEEVII TL Sbjct: 61 SHDLVSPERFPVYNTGRGGGYTYHGPGQRIVYLMLNLAKRQKDLRCFVAALEEVIICTLN 120 Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS 192 LGI+GERREDR+GIWVVR +KT + L E+KIAAIGIRIRKWISFHG SLNISPDLS Sbjct: 121 KLGIIGERREDRIGIWVVRSDKTIAGKQCLAEDKIAAIGIRIRKWISFHGFSLNISPDLS 180 Query: 193 YYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEY 242 +Y+GI+PCGI+QHGVTSLKELG+ YS +YIDTLIR+SFES+FGPTILHE+ Sbjct: 181 HYSGIIPCGINQHGVTSLKELGHFYSTQYIDTLIRESFESIFGPTILHEF 230 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222086076|ref|YP_002544608.1| lipoyltransferase [Agrobacterium radiobacter K84] Length = 238 | Back alignment and organism information |
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>gi|23500333|ref|NP_699773.1| lipoate-protein ligase B [Brucella suis 1330] Length = 267 | Back alignment and organism information |
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>gi|306838999|ref|ZP_07471820.1| lipoate-protein ligase B [Brucella sp. NF 2653] Length = 252 | Back alignment and organism information |
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>gi|254720424|ref|ZP_05182235.1| lipoyltransferase [Brucella sp. 83/13] Length = 267 | Back alignment and organism information |
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>gi|37079867|sp|Q8UF44|LIPB_AGRT5 RecName: Full=Octanoyltransferase; AltName: Full=Lipoate-protein ligase B; AltName: Full=Lipoyl/octanoyl transferase; AltName: Full=Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase Length = 268 | Back alignment and organism information |
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>gi|294853614|ref|ZP_06794286.1| octanoyltransferase [Brucella sp. NVSL 07-0026] Length = 252 | Back alignment and organism information |
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>gi|148558670|ref|YP_001257577.1| lipoate-protein ligase B [Brucella ovis ATCC 25840] Length = 267 | Back alignment and organism information |
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>gi|225629083|ref|ZP_03787116.1| lipoate-protein ligase B [Brucella ceti str. Cudo] Length = 267 | Back alignment and organism information |
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>gi|254711142|ref|ZP_05172953.1| lipoyltransferase [Brucella pinnipedialis B2/94] Length = 267 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
PRK14341 | 213 | PRK14341, PRK14341, lipoate-protein ligase B; Provision | 8e-98 | |
PRK14347 | 209 | PRK14347, PRK14347, lipoate-protein ligase B; Provision | 1e-49 | |
PRK14345 | 234 | PRK14345, PRK14345, lipoate-protein ligase B; Provision | 8e-37 | |
PRK14344 | 223 | PRK14344, PRK14344, lipoate-protein ligase B; Provision | 1e-33 | |
PRK14349 | 220 | PRK14349, PRK14349, lipoate-protein ligase B; Provision | 9e-29 | |
KOG0325 | 226 | KOG0325, KOG0325, KOG0325, Lipoyltransferase [Energy pr | 1e-26 | |
COG0321 | 221 | COG0321, LipB, Lipoate-protein ligase B [Coenzyme metab | 6e-66 | |
TIGR00214 | 184 | TIGR00214, lipB, lipoate-protein ligase B | 3e-41 | |
PRK14342 | 213 | PRK14342, PRK14342, lipoate-protein ligase B; Provision | 4e-36 | |
PRK14348 | 221 | PRK14348, PRK14348, lipoate-protein ligase B; Provision | 1e-25 | |
PRK14343 | 235 | PRK14343, PRK14343, lipoate-protein ligase B; Provision | 4e-31 | |
PRK14346 | 230 | PRK14346, PRK14346, lipoate-protein ligase B; Provision | 8e-30 | |
pfam03099 | 124 | pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein li | 1e-10 |
>gnl|CDD|184635 PRK14341, PRK14341, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|172820 PRK14344, PRK14344, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|35546 KOG0325, KOG0325, KOG0325, Lipoyltransferase [Energy production and conversion, Coenzyme transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30669 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism] | Back alignment and domain information |
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>gnl|CDD|161768 TIGR00214, lipB, lipoate-protein ligase B | Back alignment and domain information |
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>gnl|CDD|184636 PRK14342, PRK14342, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|184637 PRK14343, PRK14343, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|184639 PRK14346, PRK14346, lipoate-protein ligase B; Provisional | Back alignment and domain information |
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>gnl|CDD|145963 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
PRK00008 | 212 | lipB lipoyltransferase; Reviewed | 100.0 | |
COG0321 | 221 | LipB Lipoate-protein ligase B [Coenzyme metabolism] | 100.0 | |
KOG0325 | 226 | consensus | 100.0 | |
TIGR00214 | 220 | lipB lipoyltransferase; InterPro: IPR000544 Lipoate-pro | 99.97 | |
PRK03822 | 338 | lplA lipoate-protein ligase A; Provisional | 99.17 | |
COG0095 | 248 | LplA Lipoate-protein ligase A [Coenzyme metabolism] | 99.11 | |
KOG3159 | 336 | consensus | 97.41 | |
PRK05935 | 190 | biotin--protein ligase; Provisional | 97.96 | |
COG0340 | 238 | BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme m | 96.94 | |
PRK08330 | 236 | biotin--protein ligase; Provisional | 96.76 | |
PRK11886 | 319 | biotin--protein ligase; Provisional | 95.34 | |
pfam03099 | 124 | BPL_LplA_LipB Biotin/lipoate A/B protein ligase family. | 97.1 | |
KOG0325 | 226 | consensus | 95.81 |
>PRK00008 lipB lipoyltransferase; Reviewed | Back alignment and domain information |
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>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism] | Back alignment and domain information |
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>KOG0325 consensus | Back alignment and domain information |
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>TIGR00214 lipB lipoyltransferase; InterPro: IPR000544 Lipoate-protein ligase B (gene lipB) is the bacterial enzyme that creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes | Back alignment and domain information |
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>PRK03822 lplA lipoate-protein ligase A; Provisional | Back alignment and domain information |
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>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] | Back alignment and domain information |
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>KOG3159 consensus | Back alignment and domain information |
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>PRK05935 biotin--protein ligase; Provisional | Back alignment and domain information |
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>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] | Back alignment and domain information |
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>PRK08330 biotin--protein ligase; Provisional | Back alignment and domain information |
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>PRK11886 biotin--protein ligase; Provisional | Back alignment and domain information |
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>pfam03099 BPL_LplA_LipB Biotin/lipoate A/B protein ligase family | Back alignment and domain information |
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>KOG0325 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
2qhs_A | 237 | Structural Basis Of Octanoic Acid Recognition By Li | 7e-46 | |
2qht_A | 210 | Structural Basis Of Octanoic Acid Recognition By Li | 4e-45 | |
1w66_A | 232 | Structure Of A Lipoate-Protein Ligase B From Mycoba | 3e-41 |
>gi|168988691|pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate- Protein Ligase B Length = 237 | Back alignment and structure |
Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 24/232 (10%) Query: 17 ENISPIRWWVMD-NPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD 75 S + + V D V Y E+ +R + + GN + LLEHP + T G A ++ Sbjct: 16 PRGSHMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGEN 75 Query: 76 LLSP------KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIR 129 LL P +Y RGG TYHGPGQ + Y + + +++R F+ +EE I+R Sbjct: 76 LLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVG---REVRRFLRQIEEAIVR 132 Query: 130 TLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISP 189 GI G+WV E+K+ AIG+ +++ +SFHG +LN++ Sbjct: 133 VAAGYGISAYPTPGYAGVWV-------------GEDKLCAIGVAVKEGVSFHGFALNVNT 179 Query: 190 DLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILH 240 DL+ +T IVPCG+ GVTSL++ LG M+ + +F VFG + Sbjct: 180 DLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVE 231 |
>gi|168988692|pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By Lipoate- Protein Ligase B Length = 210 | Back alignment and structure |
>gi|85543880|pdb|1W66|A Chain A, Structure Of A Lipoate-Protein Ligase B From Mycobacterium Tuberculosis Length = 232 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
2qhs_A | 237 | Lipoyltransferase; globular protein; HET: OCA; 1.50A {T | 2e-34 | |
1w66_A | 232 | Lipoyltransferase; lipoate-protein ligase B, lipoic aci | 5e-32 | |
2c8m_A | 262 | Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A | 2e-18 | |
3a7r_A | 337 | Lipoate-protein ligase A; adenylate-forming enzyme, lip | 7e-14 | |
1vqz_A | 341 | Lipoate-protein ligase, putative; NP_345629.1, structur | 3e-10 | |
2p0l_A | 288 | Lipoate-protein ligase A; PFAM, lopoate-protein ligase | 9e-06 | |
2p5i_A | 288 | BH3822 protein; PFAM03099, structural genomics, PSI-2, | 7e-07 | |
2e5a_A | 347 | Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10 | 8e-07 |
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A Length = 237 | Back alignment and structure |
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Score = 141 bits (355), Expect = 2e-34 Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%) Query: 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP------KSLPV 84 V Y E+ +R + + GN + LLEHP + T G A ++LL P + Sbjct: 31 VPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFEL 90 Query: 85 YTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDR 144 Y RGG TYHGPGQ + Y + + +++R F+ +EE I+R GI Sbjct: 91 YWVERGGDVTYHGPGQLVGYPIFPV---GREVRRFLRQIEEAIVRVAAGYGISAYPTPGY 147 Query: 145 VGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQ 204 G+WV +K+ AIG+ +++ +SFHG +LN++ DL+ +T IVPCG+ Sbjct: 148 AGVWVGE-------------DKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKG 194 Query: 205 HGVTSL-KELGYSYSMKYIDTLIRKSFESVFG 235 GVTSL K LG M+ + +F VFG Sbjct: 195 KGVTSLEKLLGRKVPMEEAKARVVAAFAEVFG 226 |
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Length = 232 | Back alignment and structure |
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>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* Length = 262 | Back alignment and structure |
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>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Length = 337 | Back alignment and structure |
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>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3 Length = 341 | Back alignment and structure |
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>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP: d.104.1.3 Length = 288 | Back alignment and structure |
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>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Length = 288 | Back alignment and structure |
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>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} Length = 347 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
2qhs_A | 237 | Lipoyltransferase; globular protein; HET: OCA; 1.50A {T | 100.0 | |
1w66_A | 232 | Lipoyltransferase; lipoate-protein ligase B, lipoic aci | 100.0 | |
2c8m_A | 262 | Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A | 99.92 | |
2p5i_A | 288 | BH3822 protein; PFAM03099, structural genomics, PSI-2, | 99.85 | |
2p0l_A | 288 | Lipoate-protein ligase A; PFAM, lopoate-protein ligase | 99.79 | |
3a7r_A | 337 | Lipoate-protein ligase A; adenylate-forming enzyme, lip | 99.79 | |
1vqz_A | 341 | Lipoate-protein ligase, putative; NP_345629.1, structur | 99.76 | |
2e5a_A | 347 | Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10 | 99.72 | |
2dxu_A | 235 | Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynt | 97.03 | |
2eay_A | 233 | Biotin [acetyl-COA-carboxylase] ligase; biotin biosynth | 94.02 | |
1bia_A | 321 | BIRA bifunctional protein; transcription regulation; 2. | 93.96 | |
2cgh_A | 268 | Biotin ligase; 1.8A {Mycobacterium tuberculosis} PDB: 3 | 93.37 | |
2ej9_A | 237 | Putative biotin ligase; biotin biosynthesis, monomer, X | 92.68 |
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A | Back alignment and structure |
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Probab=100.00 E-value=0 Score=480.87 Aligned_cols=209 Identities=33% Similarity=0.604 Sum_probs=193.5 Q ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHC------CCCCCEEEEECCCCEE Q ss_conf 238998-088858899999999999999739978789998068737743478855610------5478249980566707 Q gi|254780177|r 21 PIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLL------SPKSLPVYTTGRGGGY 93 (257) Q Consensus 21 ~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll------~~~~ipv~~t~RGG~i 93 (257) ++++++ ..|++||+++|++|+++++++.++..+|+||+||||||||+|++++++|++ ...++||++|+|||++ T Consensus 20 ~~~~~v~dLG~i~Y~~a~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~ll~~~~~l~~~~i~v~~t~RGG~i 99 (237) T 2qhs_A 20 HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDV 99 (237) T ss_dssp -CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCE T ss_conf 97179977898688999999999999996699998699980798376777887443458866752479867994799716 Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000 Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257) Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257) |||||||||+|||+||++ ++++|++.||+++|++|++|||++.++++.+|||+++ +||||||++ T Consensus 100 TyHGPGQLV~YpIl~L~~---~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~-------------~KIasIGi~ 163 (237) T 2qhs_A 100 TYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE-------------DKLCAIGVA 163 (237) T ss_dssp EEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETT-------------EEEEEEEEE T ss_pred EEECCCCEEEEEHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-------------HHHHHHHHH T ss_conf 898999667777465553---2999999999999999986266411336777634402-------------159999987 Q ss_pred CCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHCCCH Q ss_conf 048889988999954991351734105679785212899-18988999999999999998746111023312421 Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYANIND 247 (257) Q Consensus 174 i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~~~~d 247 (257) ++|||||||||||||+||++|+.|+|||+++..||||++ +|.+++++++++.++++|++.||...++ .+++| T Consensus 164 v~r~vt~HG~aLNV~~dL~~F~~IvpCGl~~~~vTSL~~elg~~~~~~ev~~~l~~~f~~~Fg~~~ve--~s~~e 236 (237) T 2qhs_A 164 VKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVE--GSVHE 236 (237) T ss_dssp EETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC-------- T ss_pred HCCCEEECCEEEECCCCHHHHCCEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEC--CCCCC T ss_conf 24755832268971698277073783688998372469976899999999999999999986996003--65567 |
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 | Back alignment and structure |
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>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* | Back alignment and structure |
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>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 | Back alignment and structure |
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>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP: d.104.1.3 | Back alignment and structure |
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>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* | Back alignment and structure |
---|
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3 | Back alignment and structure |
---|
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A | Back alignment and structure |
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>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... | Back alignment and structure |
---|
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* | Back alignment and structure |
---|
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
---|
>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A | Back alignment and structure |
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>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | |||
d1w66a1 | 216 | d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacteri | 3e-31 | |
d2c8ma1 | 256 | d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermopla | 1e-19 | |
d2p0la1 | 269 | d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptoco | 1e-14 | |
d2p5ia1 | 265 | d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacil | 5e-11 | |
d1x2ga2 | 246 | d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain | 2e-15 | |
d1vqza2 | 241 | d.104.1.3 (A:1-241) LplA-like protein SP1160, N-termina | 5e-14 |
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: LplA-like domain: Lipoyltransferase LipB species: Mycobacterium tuberculosis [TaxId: 1773] Score = 129 bits (324), Expect = 3e-31 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 21/231 (9%) Query: 9 LNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSG 68 + + + ++ +R VDY + + G A+ L LLEHP +YT+G Sbjct: 5 IRSKLSAID----VRQL---GTVDYRTAWQLQRELADARVAGGADTL-LLLEHPAVYTAG 56 Query: 69 TSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVII 128 + + + PV T RGG T+HGPGQ + Y ++ L D+ +V LEE +I Sbjct: 57 RRTETHERPIDGT-PVVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLI 114 Query: 129 RTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNIS 188 + LG+ R + R G+W+ + +AAIG+R+ + + HG +LN Sbjct: 115 QVCADLGLHAGRVDGRSGVWLPGRPARK----------VAAIGVRVSRATTLHGFALNCD 164 Query: 189 PDLSYYTGIVPCGISQHGVTSL-KELGYSYSMKYIDTLIRKSFESVFGPTI 238 DL+ +T IVPCGIS VTSL ELG + ++ + + + + + Sbjct: 165 CDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 215 |
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Length = 256 | Back information, alignment and structure |
---|
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Length = 269 | Back information, alignment and structure |
---|
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Length = 265 | Back information, alignment and structure |
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>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 | Back information, alignment and structure |
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>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 241 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
d1w66a1 | 216 | Lipoyltransferase LipB {Mycobacterium tuberculosis [Tax | 100.0 | |
d2p0la1 | 269 | Lipoate-protein ligase A {Streptococcus agalactiae [Tax | 99.93 | |
d2c8ma1 | 256 | Lipoate-protein ligase A {Thermoplasma acidophilum [Tax | 99.92 | |
d2p5ia1 | 265 | Hypothetical protein BH3822 {Bacillus halodurans [TaxId | 99.9 | |
d1x2ga2 | 246 | Two-domain LplA, N-terminal domain {Escherichia coli [T | 99.9 | |
d1vqza2 | 241 | LplA-like protein SP1160, N-terminal domain {Streptococ | 99.89 | |
d2zgwa2 | 188 | Biotin--[acetyl-CoA-carboxylase] ligase catalytic domai | 97.89 | |
d1biaa3 | 207 | Biotin repressor/biotin holoenzyme synthetase, catalyti | 96.39 |
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: LplA-like domain: Lipoyltransferase LipB species: Mycobacterium tuberculosis [TaxId: 1773] Probab=100.00 E-value=0 Score=474.73 Aligned_cols=207 Identities=33% Similarity=0.543 Sum_probs=190.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE Q ss_conf 78972389980888588999999999999997399787899980687377434788556105478249980566707860 Q gi|254780177|r 17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH 96 (257) Q Consensus 17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH 96 (257) ..+.+|+++ ..|++||+++|++|+++++++.++. +|+|||||||||||+|++++.++++. .++||++|+|||++||| T Consensus 7 ~~~~~i~i~-~LG~v~Y~~a~~~q~~~~~~~~~~~-~d~llllEH~pVyT~G~~~~~~~~~~-~~i~v~~tdRGG~vTyH 83 (216) T d1w66a1 7 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGG-ADTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH 83 (216) T ss_dssp SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTC-CCEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE T ss_pred HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCEEECCCCCCCCCCC-CCCCEEECCCCCEEEEE T ss_conf 218943798-8896088999999999999984799-88599994588356056676654544-11002442788527774 Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048 Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257) Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257) ||||||+|||+||++ ..++++|++.||+++|++|++|||++.+++++|||||++. .++||||||++++| T Consensus 84 GPGQlV~Ypil~l~~-~~~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~~----------~~~KIasiGv~v~~ 152 (216) T d1w66a1 84 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR 152 (216) T ss_dssp CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET T ss_pred CCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECC----------HHHHHHHHHHHHCC T ss_conf 377456677761211-2213566777889999998751442112246775012110----------15678899977503 Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHH Q ss_conf 88998899995499135173410567978521289-91898899999999999999874611 Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPT 237 (257) Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257) ||||||||||||+||++|+.|+|||+++..||||+ ++|.+++++|+++.++++|.+.|... T Consensus 153 ~vt~HG~alNv~~dL~~f~~I~pCGl~~~~vtSl~~~lg~~v~~~ev~~~l~~~~~~~f~~~ 214 (216) T d1w66a1 153 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 214 (216) T ss_dssp TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC T ss_pred CEEECCEEEECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 62521357852577554690785799999266417996899989999999999999986111 |
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} | Back information, alignment and structure |
---|
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
---|
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
---|
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
---|
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
---|
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiatic | ||
2p5i_A_ | 288 | (A:) BH3822 protein; PFAM03099, structural genomic | 1e-36 | |
2p0l_A_ | 288 | (A:) Lipoate-protein ligase A; PFAM, lopoate-prote | 1e-35 | |
1w66_A_ | 232 | (A:) Lipoyltransferase; lipoate-protein ligase B, | 2e-34 | |
2c8m_A_ | 262 | (A:) Lipoate-protein ligase A; lipoylation; HET: L | 4e-33 | |
2e5a_A_1-246 | 246 | (A:1-246) Lipoyltransferase 1; lipoyl-AMP, ligase; | 8e-33 | |
2qhs_A_ | 237 | (A:) Lipoyltransferase; globular protein; HET: OCA | 1e-31 | |
3a7r_A_1-244 | 244 | (A:1-244) Lipoate-protein ligase A; adenylate-form | 2e-29 | |
2dxu_A_1-187 | 187 | (A:1-187) Biotin--[acetyl-COA-carboxylase] ligase; | 3e-20 | |
1vqz_A_1-49_92-251 | 209 | (A:1-49,A:92-251) Lipoate-protein ligase, putative | 1e-06 | |
2ej9_A_1-191 | 191 | (A:1-191) Putative biotin ligase; biotin biosynthe | 2e-05 |
>2p5i_A (A:) BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125}Length = 288 | Back alignment and structure |
---|
Score = 147 bits (372), Expect = 1e-36 Identities = 25/276 (9%), Positives = 60/276 (21%), Gaps = 36/276 (13%) Query: 8 ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67 +L + + +S + I + + H Sbjct: 4 SLLLQQHLSQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVL 63 Query: 68 GTSAISDDLLSP-------KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120 G + V GG G + ++L ++ + Sbjct: 64 GIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKE-EKGFSIDDGY 122 Query: 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF 180 E+I + E RE + + D + K A I R + Sbjct: 123 ELXYELICSXFQDHREQIEAREIVGSYCPGSYDLSIDGK------KFAGISQRRIRGGVA 176 Query: 181 HGLSLNISPDLSYYTG----IVPCGISQHGVTSLK-------------ELGYSYSMKYID 223 + L +S + ++ + LG +++ + Sbjct: 177 VQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVL 236 Query: 224 TLIRKSFESVFGPTILH-----EYANINDVISTKQS 254 + + + E+ + Sbjct: 237 LKALXTLQQHGASLLTESLSADEWLLYEQHFARISE 272 |
>2p0l_A (A:) Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1}Length = 288 | Back alignment and structure |
---|
>1w66_A (A:) Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis}Length = 232 | Back alignment and structure |
---|
>2c8m_A (A:) Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum}Length = 262 | Back alignment and structure |
---|
>2e5a_A (A:1-246) Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus}Length = 246 | Back alignment and structure |
---|
>2qhs_A (A:) Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_ALength = 237 | Back alignment and structure |
---|
>3a7r_A (A:1-244) Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*Length = 244 | Back alignment and structure |
---|
>2dxu_A (A:1-187) Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...Length = 187 | Back alignment and structure |
---|
>1vqz_A (A:1-49,A:92-251) Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}Length = 209 | Back alignment and structure |
---|
>2ej9_A (A:1-191) Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}Length = 191 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 257 | lipoyltransferase [Candidatus Liberibacter asiaticus st | ||
2p0l_A_ | 288 | Lipoate-protein ligase A; PFAM, lopoate-protein li | 100.0 | |
2p5i_A_ | 288 | BH3822 protein; PFAM03099, structural genomics, PS | 100.0 | |
2e5a_A_1-246 | 246 | Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; | 100.0 | |
1w66_A_ | 232 | Lipoyltransferase; lipoate-protein ligase B, lipoi | 100.0 | |
3a7r_A_1-244 | 244 | Lipoate-protein ligase A; adenylate-forming enzyme | 100.0 | |
2c8m_A_ | 262 | Lipoate-protein ligase A; lipoylation; HET: LPA; 1 | 100.0 | |
2qhs_A_ | 237 | Lipoyltransferase; globular protein; HET: OCA; 1.5 | 99.97 | |
2dxu_A_1-187 | 187 | Biotin--[acetyl-COA-carboxylase] ligase; biotin bi | 99.83 | |
1vqz_A_1-49_92-251 | 209 | Lipoate-protein ligase, putative; NP_345629.1, str | 98.81 | |
2ej9_A_1-191 | 191 | Putative biotin ligase; biotin biosynthesis, monom | 98.76 | |
3bfm_A_1-191 | 191 | Biotin protein ligase-like protein of unknown func | 96.58 | |
2cgh_A_1-221 | 221 | Biotin ligase; 1.8A {Mycobacterium tuberculosis} ( | 96.3 | |
2eay_A_1-185 | 185 | Biotin [acetyl-COA-carboxylase] ligase; biotin bio | 95.71 | |
1bia_A_65-271 | 207 | BIRA bifunctional protein; transcription regulatio | 93.97 |
>2p0l_A (A:) Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} | Back alignment and structure |
---|
Probab=100.00 E-value=9e-35 Score=245.88 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=198.5 Q ss_pred HHCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-------HCCCCCC Q ss_conf 1003557897238998-0888588999999999999997399787899980687377434788556-------1054782 Q gi|254780177|r 11 TSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-------LLSPKSL 82 (257) Q Consensus 11 ~~~~p~~~~~~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-------ll~~~~i 82 (257) .|.-.++.++...|++ ..|..||...+++++.+.+.+.+++.+++|++.||+|++|+|++.+.++ .+...++ T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~la~d~~ll~~~~~~~~~~~l~~~~~~p~v~lG~~q~~~~~~~~~~~~~~~~gi 82 (288) T 2p0l_A 3 LEWQDLAQLPVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPXTKTVILGXLDRELPHLELAKKEIISRGY 82 (288) T ss_dssp -CGGGGTTSCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTC T ss_pred CCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCC T ss_conf 53776743857888544687546546668999999985157899789996389989989876768119999999998699 Q ss_pred EEEEECCCCEEEEECCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 49980566707860789247776512100-12038999999999999998862885324588721674166766655565 Q gi|254780177|r 83 PVYTTGRGGGYTYHGPGQRIIYIMLNLAK-RRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL 161 (257) Q Consensus 83 pv~~t~RGG~iTyHGPGQlV~Ypii~L~~-~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~ 161 (257) ||++..+||++|||+|||++.|+|++... .+.+++.++..++++++++|+.+|+++...+...|+|+.+++ .. T Consensus 83 ~vvrR~tGGgaV~hd~G~l~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~L~~lGi~a~~~~~~~~~~~~~~d------i~ 156 (288) T 2p0l_A 83 EPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIXVDFIRSIFSDFYQPIEHFEVETSYCPGKFD------LS 156 (288) T ss_dssp EEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTC------EE T ss_pred CEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC------EE T ss_conf 489964898648977995699999626654678989999999999999999719751773255665788665------78 Q ss_pred CCCCCCEEHHEECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCCCC------------CCHHH-HCCCCCHHHHHH Q ss_conf 64210100000004888998899995499135----17341056797852------------12899-189889999999 Q gi|254780177|r 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQHGV------------TSLKE-LGYSYSMKYIDT 224 (257) Q Consensus 162 ~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~~v------------TSl~~-lg~~i~~~ev~~ 224 (257) ...+||+++|.++++++++||.+||+++|++. |+.|.||++.++.+ ||+.+ ++.+++++++.+ T Consensus 157 ~~g~KI~G~aq~~~~~~~l~~gsl~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~ 236 (288) T 2p0l_A 157 INGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQXISDFYKIGLGDTGSPIAYPNVDPEIXANLSDLLDCPXTVEDVID 236 (288) T ss_dssp ETTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHH T ss_pred ECCEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEHHHHCCCCCCHHHHHH T ss_conf 88887899899983893999999999788789889998877640254455434677555552219997399999999999 Q ss_pred HHHHHHHHHHCHHHHCHHH Q ss_conf 9999999874611102331 Q gi|254780177|r 225 LIRKSFESVFGPTILHEYA 243 (257) Q Consensus 225 ~l~~~f~~~Fg~~~~~~~~ 243 (257) .+.+.|.+.|+.....+++ T Consensus 237 ~l~~~~~~~~~~~~~~~l~ 255 (288) T 2p0l_A 237 RXLISLKQVGFNDRLLXIR 255 (288) T ss_dssp HHHHHHHHHTCCEEECCCC T ss_pred HHHHHHHHHCCCCCCCCCC T ss_conf 9999999865877622069 |
>2p5i_A (A:) BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} | Back alignment and structure |
---|
>2e5a_A (A:1-246) Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} | Back alignment and structure |
---|
>1w66_A (A:) Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} | Back alignment and structure |
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>3a7r_A (A:1-244) Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* | Back alignment and structure |
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>2c8m_A (A:) Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} | Back alignment and structure |
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>2qhs_A (A:) Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A | Back alignment and structure |
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>2dxu_A (A:1-187) Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... | Back alignment and structure |
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>1vqz_A (A:1-49,A:92-251) Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
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>2ej9_A (A:1-191) Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
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>3bfm_A (A:1-191) Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} | Back alignment and structure |
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>2cgh_A (A:1-221) Biotin ligase; 1.8A {Mycobacterium tuberculosis} | Back alignment and structure |
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>2eay_A (A:1-185) Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* | Back alignment and structure |
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>1bia_A (A:65-271) BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} | Back alignment and structure |
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