Query gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 257
No_of_seqs 124 out of 1284
Neff 4.9
Searched_HMMs 39220
Date Mon May 23 04:05:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00008 lipB lipoyltransferas 100.0 0 0 511.2 22.4 202 27-241 8-209 (212)
2 COG0321 LipB Lipoate-protein l 100.0 0 0 511.5 21.8 208 20-239 8-215 (221)
3 KOG0325 consensus 100.0 0 0 352.7 17.0 206 21-243 4-221 (226)
4 TIGR00214 lipB lipoyltransfera 100.0 3.8E-31 9.8E-36 222.7 11.4 174 51-235 11-220 (220)
5 PRK03822 lplA lipoate-protein 99.2 2.2E-08 5.5E-13 75.1 19.4 205 19-242 1-220 (338)
6 COG0095 LplA Lipoate-protein l 99.1 5.2E-08 1.3E-12 72.6 19.1 187 33-236 14-216 (248)
7 PRK05935 biotin--protein ligas 98.0 0.00047 1.2E-08 46.9 12.9 127 94-239 48-180 (190)
8 KOG3159 consensus 97.4 0.014 3.5E-07 37.4 14.2 176 46-237 32-223 (336)
9 pfam03099 BPL_LplA_LipB Biotin 97.1 0.0045 1.1E-07 40.6 8.5 104 77-190 17-124 (124)
10 COG0340 BirA Biotin-(acetyl-Co 96.9 0.039 9.9E-07 34.5 12.1 127 88-235 35-168 (238)
11 PRK08330 biotin--protein ligas 96.8 0.057 1.4E-06 33.4 12.0 119 89-234 48-168 (236)
12 KOG0325 consensus 95.8 0.00093 2.4E-08 45.0 -1.7 55 54-111 98-172 (226)
13 PRK11886 biotin--protein ligas 95.3 0.27 6.9E-06 29.0 11.1 128 89-236 117-251 (319)
14 TIGR00545 lipoyltrans lipoyltr 89.7 1.8 4.6E-05 23.7 13.4 196 25-232 7-226 (346)
15 PTZ00275 biotin-acetyl-CoA-car 83.9 3.8 9.7E-05 21.6 13.2 101 116-237 98-222 (288)
16 PRK08477 biotin--protein ligas 77.5 6.2 0.00016 20.2 11.8 111 94-234 49-162 (214)
17 pfam04017 DUF366 Domain of unk 75.0 7.2 0.00018 19.8 9.1 90 118-235 82-172 (183)
18 pfam07718 Coatamer_beta_C Coat 54.1 12 0.0003 18.4 2.7 61 56-121 102-166 (279)
19 KOG1536 consensus 51.6 20 0.0005 16.9 9.4 126 88-235 426-568 (649)
20 KOG1144 consensus 43.5 23 0.00057 16.6 2.7 105 116-222 628-757 (1064)
21 COG1586 SpeD S-adenosylmethion 39.5 26 0.00067 16.1 2.5 35 63-97 89-130 (136)
22 TIGR01608 citD citrate lyase a 39.4 30 0.00076 15.8 2.8 24 116-139 38-61 (95)
23 PRK06955 biotin--protein ligas 38.8 31 0.00079 15.7 11.8 136 89-236 79-228 (300)
24 PRK05761 DNA polymerase I; Rev 35.2 35 0.0009 15.3 4.9 30 27-57 189-218 (777)
25 PRK01236 S-adenosylmethionine 35.1 34 0.00086 15.4 2.5 31 106-136 8-38 (112)
26 pfam04592 SelP_N Selenoprotein 35.0 35 0.00088 15.3 2.6 42 57-98 85-127 (238)
27 PRK01706 S-adenosylmethionine 33.6 34 0.00086 15.4 2.3 16 120-135 25-40 (123)
28 TIGR02759 TraD_Ftype type IV c 33.5 15 0.00038 17.7 0.5 71 78-150 233-305 (613)
29 KOG2181 consensus 32.8 35 0.0009 15.3 2.3 50 59-108 93-172 (415)
30 PRK02770 S-adenosylmethionine 31.5 40 0.001 14.9 2.5 18 120-137 36-53 (139)
31 PRK10598 hypothetical protein; 31.2 32 0.00083 15.5 1.9 29 106-134 118-146 (186)
32 TIGR03330 SAM_DCase_Bsu S-aden 29.7 43 0.0011 14.7 2.5 33 105-137 7-39 (112)
33 pfam10106 DUF2345 Uncharacteri 29.3 38 0.00096 15.1 2.0 21 84-105 126-146 (156)
34 TIGR00483 EF-1_alpha translati 29.1 41 0.001 14.9 2.2 16 55-70 342-357 (445)
35 PRK03124 S-adenosylmethionine 28.7 45 0.0011 14.6 2.7 15 120-134 23-37 (127)
36 PRK00458 S-adenosylmethionine 26.1 50 0.0013 14.3 2.5 31 106-136 20-50 (127)
37 TIGR00484 EF-G translation elo 25.8 27 0.00069 16.0 0.8 13 98-110 564-576 (705)
38 cd03859 M14_CPT Peptidase M14- 23.5 48 0.0012 14.4 1.7 17 29-45 3-19 (295)
39 PRK06732 phosphopantothenate-- 23.5 52 0.0013 14.2 1.9 15 218-232 212-226 (228)
40 COG0692 Ung Uracil DNA glycosy 23.4 22 0.00056 16.7 -0.1 20 85-104 56-75 (223)
41 KOG2232 consensus 23.1 57 0.0015 13.9 3.6 44 91-134 121-167 (734)
42 KOG4179 consensus 22.9 57 0.0015 13.9 2.0 44 89-133 225-269 (568)
43 PRK06019 phosphoribosylaminoim 22.7 56 0.0014 14.0 1.9 21 81-104 140-161 (377)
44 COG3760 Uncharacterized conser 22.6 30 0.00077 15.7 0.5 35 178-212 109-143 (164)
45 PRK04025 S-adenosylmethionine 22.4 59 0.0015 13.9 2.3 14 120-133 23-36 (139)
46 TIGR01561 gde_arch glycogen de 22.2 59 0.0015 13.8 2.4 44 181-234 422-468 (575)
47 COG0026 PurK Phosphoribosylami 22.2 58 0.0015 13.9 1.9 90 80-205 133-224 (375)
48 TIGR02079 THD1 threonine dehyd 21.9 58 0.0015 13.9 1.8 23 101-123 330-352 (415)
49 KOG3045 consensus 21.4 44 0.0011 14.7 1.1 56 160-226 187-254 (325)
50 COG2333 ComEC Predicted hydrol 21.4 61 0.0016 13.7 2.3 27 80-106 136-162 (293)
51 pfam06641 consensus 20.7 50 0.0013 14.3 1.3 38 62-99 83-129 (406)
52 pfam02675 AdoMet_dc S-adenosyl 20.3 65 0.0017 13.6 2.4 32 106-137 3-34 (107)
No 1
>PRK00008 lipB lipoyltransferase; Reviewed
Probab=100.00 E-value=0 Score=511.21 Aligned_cols=202 Identities=46% Similarity=0.781 Sum_probs=192.6
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 08885889999999999999973997878999806873774347885561054782499805667078607892477765
Q gi|254780177|r 27 MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106 (257)
Q Consensus 27 ~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypi 106 (257)
..|++||++||++|+++ .+++++..+|+|||||||||||+|++++++|++++.++||++|+|||++|||||||||+|||
T Consensus 8 ~LG~v~Y~~a~~~q~~l-~~~~~~~~~d~l~llEH~pVyT~G~~~~~~~ll~~~~i~v~~t~RGG~iTyHGPGQlV~Ypi 86 (212)
T PRK00008 8 QLGLVDYEEAWEAMREF-TDIRDGETPDEVWLLEHPPVYTAGQAGKPEHLLNPGDIPVVQTDRGGQVTYHGPGQLVAYPL 86 (212)
T ss_pred ECCCCCHHHHHHHHHHH-HHHHCCCCCCEEEEEECCCCEECCCCCCHHHCCCCCCCCEEEECCCCCEEEECCCCEEEEEE
T ss_conf 88974889999999999-99864899987999925884544767883223687798779947997357648987899999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEE
Q ss_conf 12100120389999999999999988628853245887216741667666555656421010000000488899889999
Q gi|254780177|r 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLN 186 (257)
Q Consensus 107 i~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alN 186 (257)
+||++++.++++||+.||+++|++|++|||++++++++|||||.+ ++||||||+|++||+||||||||
T Consensus 87 ~~L~~~~~~v~~~v~~lE~~iI~~l~~~gi~a~~~~~~~GVwv~~------------~~KIasIGi~v~~~vt~HG~alN 154 (212)
T PRK00008 87 LDLKRRKLDVRDYVRRLEEAVINTLAEFGIKAERREGAPGVWVGP------------ERKIAAIGLRVRRGVSFHGLALN 154 (212)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCC------------CCEEEEEEEHCCCCEEECCEEEE
T ss_conf 834655630999999999999999997597413368984121267------------86666532110188270775898
Q ss_pred ECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHCH
Q ss_conf 5499135173410567978521289918988999999999999998746111023
Q gi|254780177|r 187 ISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHE 241 (257)
Q Consensus 187 v~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~ 241 (257)
||+||++|+.|+|||+++..||||+++|.+++++|+++.|+++|.+.|+......
T Consensus 155 v~~dL~~F~~I~pCG~~~~~vTSl~~~g~~i~~~ev~~~l~~~f~~~F~~~~~~~ 209 (212)
T PRK00008 155 VDMDLSPFSRINPCGIAGLGVTSLSDLGPPVTVEEVDPALAAAFAAVLGYALAET 209 (212)
T ss_pred ECCCHHHCCCEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCEEECC
T ss_conf 4698143266874788998724299978999999999999999999809743034
No 2
>COG0321 LipB Lipoate-protein ligase B [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=511.49 Aligned_cols=208 Identities=43% Similarity=0.747 Sum_probs=200.2
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEECCC
Q ss_conf 72389980888588999999999999997399787899980687377434788556105478249980566707860789
Q gi|254780177|r 20 SPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPG 99 (257)
Q Consensus 20 ~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyHGPG 99 (257)
+.+.|....|++||.++|+.|+++++++.++..+|+||++|||||||+|++++.++++.+.++||++|+|||++||||||
T Consensus 8 ~~~~~~~~~Gl~~Y~~a~~~m~~~~~~r~~~~~~d~i~lvEHppVyT~G~~~~~e~l~~~~~ipVv~~~RGGqvTyHGPG 87 (221)
T COG0321 8 PKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGKAEHLLMPDDIPVVQTDRGGQVTYHGPG 87 (221)
T ss_pred CCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHCCCCCCCCEEEECCCCEEEEECCC
T ss_conf 55403120575217999999999998862489888599980387051565688756246899988992688336775898
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf 24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r 100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179 (257)
Q Consensus 100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT 179 (257)
|+|+|||+||++++.++|+||+.||+++|++|++|||+++++++++||||++ ++||||||||||||||
T Consensus 88 Q~V~Y~ildLkr~~~~vr~~V~~LEqavI~tLa~~~i~~~~~~~~~GVwV~~------------~~KIAaiGirirr~vt 155 (221)
T COG0321 88 QLVAYPILDLKRPKLDVREYVRALEQAVINTLAEYGIEAERRPDRPGVWVEE------------ERKIAAIGIRIRRGVT 155 (221)
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC------------CCEEEEEEEEEECCCC
T ss_conf 2899999714655531999999999999999997497644569997587568------------8648888778714510
Q ss_pred EEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 988999954991351734105679785212899189889999999999999987461110
Q gi|254780177|r 180 FHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257)
Q Consensus 180 ~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257)
|||+||||++||++|+.|+|||+.+..||||++++..+++++|+..+.++|++.||....
T Consensus 156 ~HGlALNv~~DL~~F~~I~PCG~~~~~~tsl~d~~~~v~~~~V~~~l~~~~~~~l~~~~~ 215 (221)
T COG0321 156 FHGLALNVNMDLSPFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKLLGPKLI 215 (221)
T ss_pred EEEEEEEECCCCHHCCCEECCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 101278505782120624036668972547989669875999999999999998487212
No 3
>KOG0325 consensus
Probab=100.00 E-value=0 Score=352.69 Aligned_cols=206 Identities=33% Similarity=0.538 Sum_probs=182.0
Q ss_pred CEEEE-EECCCCCHHHHHHHHHHHHHHH-----HCCCCCCEEEEEECCCEEEECCCCCH-----HHHCCCCCCEEEEECC
Q ss_conf 23899-8088858899999999999999-----73997878999806873774347885-----5610547824998056
Q gi|254780177|r 21 PIRWW-VMDNPVDYEESQIIMEREIQRI-----SLGNAEELVWLLEHPPLYTSGTSAIS-----DDLLSPKSLPVYTTGR 89 (257)
Q Consensus 21 ~ie~~-~~~G~v~Y~~al~~q~~~~~~v-----~~~~~~d~l~llEH~pVyT~G~~~~~-----~dll~~~~ipv~~t~R 89 (257)
++.|. +..|++.|..++++|+++++.. +.....+++++.||.||||+|.+... +..+...+.++++|.|
T Consensus 4 ~~~~~~~r~g~~~y~~~~~lq~rlvr~~~~~~~s~~~~~p~il~~eh~PvYT~G~rt~~~~~~~e~~l~~~ga~~~~t~R 83 (226)
T KOG0325 4 PIGVETVRAGLVHYHRTLALQNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTER 83 (226)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEEEEC
T ss_conf 52289997262127765577899999765206566898887766156871565125687541011023315741899602
Q ss_pred CCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 67078607892477765121001203899999999999999886288532458872167416676665556564210100
Q gi|254780177|r 90 GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAA 169 (257)
Q Consensus 90 GG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIas 169 (257)
||++|||||||+++|||+||+..+..+|+||..|| .++..|+|++....+.+||||.+ .|+||
T Consensus 84 GG~iTfHGPgQl~~ypIidL~~f~~~~r~~Vs~le----~~c~~~~i~~~~~t~~tgvwV~d-------------~k~aa 146 (226)
T KOG0325 84 GGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLE----AACPDFGIKGTASTKDTGVWVGD-------------AKIAA 146 (226)
T ss_pred CCEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHH----HHCCCCCCCCCCCCCCCCEEECC-------------CEEEE
T ss_conf 73678847996588899872014654045787887----65432342033343445655047-------------70679
Q ss_pred HHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHHHHCHHH
Q ss_conf 000004888998899995499135173410567978521289-91898899999999999999874611102331
Q gi|254780177|r 170 IGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTILHEYA 243 (257)
Q Consensus 170 IGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~ 243 (257)
||+++++||||||+||||++||+||+.|+|||+.+..+|||. |....++..++..++...|.++|......+..
T Consensus 147 iGi~vsr~IT~HGlaLN~~tDL~~fnhiv~CGi~~~~vtSi~~e~~~~~~~~~~~~~~l~~l~k~f~~~~~~~~~ 221 (226)
T KOG0325 147 IGIRVSREITYHGLALNVNTDLTYFNHIVPCGIYGRGVTSISKEIRRLVTVEESVAIRLVSLTKVFSCMLQESNE 221 (226)
T ss_pred EEEEECCCEEECCEEEEECCCCCHHHCCCCCEEECCCCCEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHEECCCC
T ss_conf 999842747463257885267554440114506623041202233154543676789999998764432000157
No 4
>TIGR00214 lipB lipoyltransferase; InterPro: IPR000544 Lipoate-protein ligase B (gene lipB) is the bacterial enzyme that creates an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes. Such an enzyme has also been found in fungi , where it is located in the mitochondria. It also seems to exist in plants and is encoded in the chloroplast genome of the red alga Cyanidium caldarium .; GO: 0009107 lipoate biosynthetic process.
Probab=99.97 E-value=3.8e-31 Score=222.74 Aligned_cols=174 Identities=39% Similarity=0.756 Sum_probs=151.8
Q ss_pred CCCCEEEEEEC---------CCEEEECCC----------CCHHHHCCCC--CCE---EEEECCCCEEEEECCCCEEEEEE
Q ss_conf 97878999806---------873774347----------8855610547--824---99805667078607892477765
Q gi|254780177|r 51 NAEELVWLLEH---------PPLYTSGTS----------AISDDLLSPK--SLP---VYTTGRGGGYTYHGPGQRIIYIM 106 (257)
Q Consensus 51 ~~~d~l~llEH---------~pVyT~G~~----------~~~~dll~~~--~ip---v~~t~RGG~iTyHGPGQlV~Ypi 106 (257)
...|.+|+++| +|+||.|++ ++.+.++... .+| +.+++|||++|||||||+++|++
T Consensus 11 ~~~d~~~~~~~~p~~~~~~~~p~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~gg~~~~~~pg~~~~~~~ 90 (220)
T TIGR00214 11 ETLDGLWLLEHNPIILTFEFPPVYTGGKRIKKTLTPDQGGKPEHLLPDPQKDYPPPELVQSERGGQVTYHGPGQLVGYVL 90 (220)
T ss_pred HHHHCEEEECCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHEEECCCCEEEECCCCCEEEEEE
T ss_conf 22200002116844787523521013310000037421133100015651126630102201576245406752211000
Q ss_pred ECCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCC---CC------CCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf 1210012-03899999999999999886288532---45------88721674166766655565642101000000048
Q gi|254780177|r 107 LNLAKRR-KDLRCFVAALEEVIIRTLKILGIVGE---RR------EDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257)
Q Consensus 107 i~L~~~~-~~v~~yv~~lE~~ii~~l~~~gI~~~---~~------~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257)
+|++... .++++++..+|+.++.+++.+++.++ .. .+.+|||+++. .+|+|++|+++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g-----------~~~~~~~~~~~~~ 159 (220)
T TIGR00214 91 LDLKRFKSLPLRWLVTCLEQTLVRTLAELGLEGDTDKPLNLDALTADAPGVWVENG-----------KKKVASLGLRVRR 159 (220)
T ss_pred EHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCC-----------CCCHHHHHHHHHC
T ss_conf 00011104556888988888998888750332334443221001456662021265-----------3000111101102
Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHC--CCCCHHHHHHHHHHHHHHHHC
Q ss_conf 88998899995499135173410567978521289918--988999999999999998746
Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELG--YSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg--~~i~~~ev~~~l~~~f~~~Fg 235 (257)
|+++||+++|+++||++|..++|||+.+..++++.+.- ...+.+.+...+.++|.+.|+
T Consensus 160 ~~~~~g~~~~~~~d~~~~~~~~~cg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T TIGR00214 160 GCTFHGLALNVNPDLSPFNHINPCGLGGLPVGSLNEFLPDPGLTVENVAPLLLKEFAELLG 220 (220)
T ss_pred CCEECCEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 3000322453033423000100035554202344443143321034556889999987519
No 5
>PRK03822 lplA lipoate-protein ligase A; Provisional
Probab=99.17 E-value=2.2e-08 Score=75.07 Aligned_cols=205 Identities=18% Similarity=0.224 Sum_probs=147.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEE
Q ss_conf 9723899808885889999999999999973997878999806873774347885561-----05478249980566707
Q gi|254780177|r 19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGY 93 (257)
Q Consensus 19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~i 93 (257)
|..+++.+++..=||. -+++.+-+.... ....+.++|-.+.|.+-+||..+.... +...+|+|++-.-||+.
T Consensus 1 m~~~ri~~s~s~dp~~-NLA~Ee~l~~~~--~~~~~il~lw~N~p~VvIGrnQN~~~Evn~~~~~~~~I~vvRR~SGGGa 77 (338)
T PRK03822 1 MSTLRLLISDSYDPWF-NLAVEECIFRQM--PATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGA 77 (338)
T ss_pred CCCEEEEECCCCCHHH-HHHHHHHHHHCC--CCCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCCE
T ss_conf 9746999848998356-569999998669--9889689999659978989887889974999898739859997788887
Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257)
Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257)
.||..|-+-.-+|.+-. ..+-. ...+.++++|+.+||++.. .++--+.|++. .+++||.---.+
T Consensus 78 VYhDlGN~nfsfi~~~~--~~~~~----~~~~~ii~aL~~lGi~a~~-sgRNDl~i~g~---------~g~kKiSG~A~~ 141 (338)
T PRK03822 78 VFHDLGNTCFTFMAGKP--EYDKT----ISTSIVLNALNSLGVSAEA-SGRNDLVVKTA---------EGDRKVSGSAYR 141 (338)
T ss_pred EEECCCCCEEEEEECCC--HHCHH----HHHHHHHHHHHHCCCCCEE-CCCCCEEEECC---------CCCCEECCHHHE
T ss_conf 99829985799983762--00355----5389999999973987547-68667796158---------777266051320
Q ss_pred CCCCEEEEEEEEEECCCCHHH---CCEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHCHH
Q ss_conf 048889988999954991351---73410567978-------5212899189889999999999999987461110233
Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYY---TGIVPCGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEY 242 (257)
Q Consensus 174 i~~~vT~HG~alNv~~dL~~F---~~IvPCGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~ 242 (257)
+.+...+|.-.|=++.||+.- -...+-.+..+ .||.|+++-..++.+++...+.+.|.+.||.....+.
T Consensus 142 ~~~~~~lhHGTlL~d~dl~~l~~~L~~~~~Kl~sKgikSVrsRVtNl~e~~~~i~~~~~~~~l~~~f~~~~~~~~~~~~ 220 (338)
T PRK03822 142 ETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEAEI 220 (338)
T ss_pred ECCCEEEEEEEEEECCCHHHHHHHCCCCHHHHHHCCCCCHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 2088278856888628889998654898345432273421524116646089998999999999999998376554388
No 6
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=99.11 E-value=5.2e-08 Score=72.63 Aligned_cols=187 Identities=21% Similarity=0.217 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEE-CCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 8999999999999997399787899980-6873774347885561-----054782499805667078607892477765
Q gi|254780177|r 33 YEESQIIMEREIQRISLGNAEELVWLLE-HPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106 (257)
Q Consensus 33 Y~~al~~q~~~~~~v~~~~~~d~l~llE-H~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPGQlV~Ypi 106 (257)
=...+++.+.+......+. ++.+.. ++|...+|+..+.... ....+++|++=.=||+..||.+|++-.-.|
T Consensus 14 ~~~n~A~de~ll~~~~~~~---~i~~~~~~~~~v~lG~~q~~~~Ev~~~~~~~~~i~vvRR~sGGGaV~hd~g~l~~S~i 90 (248)
T COG0095 14 PAFNLALDEALLRSLSEGG---TLRLYWWNPPTVVLGRFQNTLPEVNLEYVKEDGIPVVRRPSGGGAVFHDLGNLNYSVI 90 (248)
T ss_pred HHHHHHHHHHHHHHCCCCC---EEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEE
T ss_conf 7773499999998567787---4999997799799887655066655999986698479963799748954897899999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEE
Q ss_conf 12100120389999999999999988628853245887216741667666555656421010000000488899889999
Q gi|254780177|r 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLN 186 (257)
Q Consensus 107 i~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alN 186 (257)
++-.............+-+.+++++..+|+++...++.-=+=| ..+||+-.+-+..++.-+|.-+|=
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lgv~~~~~~~~nDl~v-------------~gkKisG~Aq~~~~~~~l~hgtll 157 (248)
T COG0095 91 TPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGRNDLVV-------------DGKKISGSAQRRTKGRILHHGTLL 157 (248)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEE-------------CCEEEEEEHHHHHCCCEEEEEEEE
T ss_conf 7898643349999999999999999984875001689875788-------------478998836766089068888999
Q ss_pred ECCCCHHH-CCEEE--CCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 54991351-73410--567978-------5212899189889999999999999987461
Q gi|254780177|r 187 ISPDLSYY-TGIVP--CGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGP 236 (257)
Q Consensus 187 v~~dL~~F-~~IvP--CGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257)
++.|++.+ +.+.+ -.+.++ .|+++.++ .+++++|+.+.+.+.|.+.++.
T Consensus 158 ~~~d~~~l~~~l~~~~~k~~~k~~~s~~~rv~~l~~~-~~~~~~e~~~~l~~~f~~~~~~ 216 (248)
T COG0095 158 LDIDLELLARVLRVPKEKIKSKGIKSVRERVANLEEL-LKISVEEFLEALLEAFFKVLGV 216 (248)
T ss_pred ECCCHHHHHHHCCCCHHHCCCCCCCCHHHHCCHHHHC-CCCCHHHHHHHHHHHHHHHCCC
T ss_conf 7388899998528870321343346678861015541-6989999999999999876378
No 7
>PRK05935 biotin--protein ligase; Provisional
Probab=97.96 E-value=0.00047 Score=46.94 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=81.4
Q ss_pred EEEC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHE
Q ss_conf 8607-892477765121001203899999999999999886288532458872167416676665556564210100000
Q gi|254780177|r 94 TYHG-PGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGI 172 (257)
Q Consensus 94 TyHG-PGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi 172 (257)
+|+- +|-+.+..++.......+...+....-.++++++..+++..... =|- ++....++|||-|=+
T Consensus 48 ~W~S~~g~l~~S~~~~~~~~~~~~~~l~~l~~~av~~~~~~~~~~~~~I-----KWP--------NDIl~~~kKi~GIL~ 114 (190)
T PRK05935 48 SWHSSDKDLLASFCFFITVLDIDVSLLFRLGTEAVLRLGQDLGITEAVI-----KWP--------NDVLVHGEKLCGVLC 114 (190)
T ss_pred EEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE-----ECC--------CHHCCCCCEEEEEEE
T ss_conf 6566999808999996487643878999999999999999846877434-----086--------650087915999978
Q ss_pred ECC----CCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 004----888998899995499135173410567978521289-9189889999999999999987461110
Q gi|254780177|r 173 RIR----KWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257)
Q Consensus 173 ~i~----~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257)
-.. ....-=|+.||||.+-+.|..| +..+|||. +.|.+++.+++-..|.++|++.+.+.+.
T Consensus 115 E~~~~~~~~~~iiGIGINvN~~~~~~~~i------~~~ATSL~~~~G~~vd~~~ll~~ll~~~e~~~~e~f~ 180 (190)
T PRK05935 115 ETIPVKGGLGVILGIGVNGNTTKDELLSI------DQPATSLQELLGHPIDLEEQRERLIKHIKHLIQENFL 180 (190)
T ss_pred EEECCCCCEEEEEEEEEECCCCCCCCCCC------CCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 75115894699999998737882003367------9882229998789789999999999999999860880
No 8
>KOG3159 consensus
Probab=97.41 E-value=0.014 Score=37.40 Aligned_cols=176 Identities=21% Similarity=0.302 Sum_probs=119.7
Q ss_pred HHHCCCCCCEEEEEECCCEEEECCCCCH---HH--HCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 9973997878999806873774347885---56--105478249980566707860789247776512100120389999
Q gi|254780177|r 46 RISLGNAEELVWLLEHPPLYTSGTSAIS---DD--LLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120 (257)
Q Consensus 46 ~v~~~~~~d~l~llEH~pVyT~G~~~~~---~d--ll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv 120 (257)
.-..+.....|+|-.-.|..-+||..++ .| ++..++|++++-.-||+..||.-|-|=+-++.+=.+ .+-....
T Consensus 32 ~~~~~~~~~~Ll~w~N~p~vVIGRhQNpw~E~nv~~~~e~~I~liRR~SGGGTVyHDlGNLN~S~lt~re~--~~r~~nl 109 (336)
T KOG3159 32 RHKNGPDKHILLLWINDPCVVIGRHQNPWQEANVALLRENNIPLIRRFSGGGTVYHDLGNLNYSLLTNREK--FDRKENL 109 (336)
T ss_pred HHCCCCCCEEEEEEECCCEEEECCCCCCCEECCHHHHHHCCCEEEEEECCCCEEEEECCCEEEEEECCHHH--CCCCCCH
T ss_conf 62158997289998089548982589965441488897569737998459965998347524899715787--6764443
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCEE--
Q ss_conf 999999999988628853245887216741667666555656421010000000488899889999549913517341--
Q gi|254780177|r 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIV-- 198 (257)
Q Consensus 121 ~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~Iv-- 198 (257)
..++++|.. ..++|=|+ .++..|.....+++||.-=--+|.|+-.||-..+=++.||..+....
T Consensus 110 ----k~iv~ALn~---------~e~~v~v~-~nqR~Di~l~~g~rKiSGtA~kI~r~raYHH~T~L~~aDl~~ls~lL~s 175 (336)
T KOG3159 110 ----KIIVRALNG---------DEPFVKVN-LNQRDDIVLDFGQRKISGTAYKIARNRAYHHCTMLLNADLENLSELLKS 175 (336)
T ss_pred ----HHHHHHHCC---------CCCEEEEC-CCCCCCCEECCCCCEECCCHHHHCCCCEEEEEEEEECCCHHHHHHHCCC
T ss_conf ----789998606---------78327614-4423451230567333441555327851566776765636777754168
Q ss_pred -ECCCCCCCCCC-----HH---HHCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf -05679785212-----89---91898899999999999999874611
Q gi|254780177|r 199 -PCGISQHGVTS-----LK---ELGYSYSMKYIDTLIRKSFESVFGPT 237 (257)
Q Consensus 199 -PCGl~~~~vTS-----l~---~lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257)
+-|+......| +. +-...++.+....++...+.+.|.+.
T Consensus 176 p~~~~~s~at~sv~sp~vk~lie~~~~v~~~q~~~av~~~y~~t~~~d 223 (336)
T KOG3159 176 PRVNIRSKATSSVRSPRVKNLIEKDDFVNVEQSAVAVQEEYKKTFKED 223 (336)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 988830125446634323315450675007687899999999875012
No 9
>pfam03099 BPL_LplA_LipB Biotin/lipoate A/B protein ligase family. This family includes biotin protein ligase, lipoate-protein ligase A and B. Biotin is covalently attached at the active site of certain enzymes that transfer carbon dioxide from bicarbonate to organic acids to form cellular metabolites. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Each organism probably has only one BPL. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine. Lipoate-protein ligase A (LPLA) catalyses the formation of an amide linkage between lipoic acid and a specific lysine residue in lipoate dependent enzymes. The unusual biosynthesis pathway of lipoic acid is mechanistically intertwined with attachment of the cofactor.
Probab=97.10 E-value=0.0045 Score=40.59 Aligned_cols=104 Identities=27% Similarity=0.359 Sum_probs=61.5
Q ss_pred CCCCCCEEEEECCCCEEEEECCCC-EEEEEEECCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCC
Q ss_conf 054782499805667078607892-4777651210012---038999999999999998862885324588721674166
Q gi|254780177|r 77 LSPKSLPVYTTGRGGGYTYHGPGQ-RIIYIMLNLAKRR---KDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRL 152 (257)
Q Consensus 77 l~~~~ipv~~t~RGG~iTyHGPGQ-lV~Ypii~L~~~~---~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~ 152 (257)
+....+.+.+.-.||.-+||.|.+ |..-.++...... ..+..|+..+...+++.|.. ....+|+++.-
T Consensus 17 ~~~g~v~va~~QT~Gr~~W~sp~g~l~~Si~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~i- 88 (124)
T pfam03099 17 LEEGGVVVARRQTGGRRVWHSPGGNLAYSLLLLPELKSFKPSDLPAYVLLLVLAVLEALGP-------KAGIPGIWVRI- 88 (124)
T ss_pred CCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH-------HHCCCCCEEEE-
T ss_conf 7659899997746899721689998899999756556401778899999999999999998-------63136962765-
Q ss_pred CCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCC
Q ss_conf 76665556564210100000004888998899995499
Q gi|254780177|r 153 NKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190 (257)
Q Consensus 153 ~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~d 190 (257)
+-.++.....+|||-|.+...+..+.|...|.+..|
T Consensus 89 --KWPNDi~~~~kKi~GiL~e~~~~~~~~~~viGiGiN 124 (124)
T pfam03099 89 --KWPNDVLVNGKKIAGILQEIRRGGTLHHGTLGIGIN 124 (124)
T ss_pred --CCCCCCEECCCEEEEEEEEECCCCCCCEEEEEEEEC
T ss_conf --386532688908999987820489645799999619
No 10
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=96.94 E-value=0.039 Score=34.48 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=84.7
Q ss_pred CCCCEEEEECCC-CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 566707860789-247776512100120389999999999999988628853245-887216741667666555656421
Q gi|254780177|r 88 GRGGGYTYHGPG-QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR-EDRVGIWVVRLNKTRDNQLLLIEE 165 (257)
Q Consensus 88 ~RGG~iTyHGPG-QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~ 165 (257)
+|.|..=+.-|| +|-.-.++.-......+-.+.-..--++.++|..+++++..+ |. -|++ ..+
T Consensus 35 GR~GR~W~Sp~G~~l~~S~~l~~~~~~~~~~~lsl~~g~av~~al~~~~~~~~iKWPN--Dv~~-------------~~k 99 (238)
T COG0340 35 GRRGRKWSSPKGGGLYMSLLLRPDLPPAELPSLSLVAGLAVAEALRKFGIDVRIKWPN--DVLL-------------NGK 99 (238)
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC--EEEE-------------CCC
T ss_conf 8899955298998879999987888767635668999999999999838676660886--2368-------------896
Q ss_pred CCEEHHEECCCC-----EEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 010000000488-----8998899995499135173410567978521289918988999999999999998746
Q gi|254780177|r 166 KIAAIGIRIRKW-----ISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 166 KIasIGi~i~~~-----vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg 235 (257)
|+|-|=+-.... ..-=|+.||++.....|..| +...|||.++...++.+++-..+.++|++.+.
T Consensus 100 Kl~GIL~E~~~~~~~~~~~viGIGINv~~~~~~~~~i------~~~atsL~~~~~~~~r~~l~~~ll~~l~~~~~ 168 (238)
T COG0340 100 KLAGILVEAVGDENGLLAVVVGIGINVNNPPPDFEDI------GQPATSLQEEGEEIDREELLAKLLKELEKYLR 168 (238)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCHHHH------CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 0799999874157885489999976006688521122------40366677630679999999999999999999
No 11
>PRK08330 biotin--protein ligase; Provisional
Probab=96.76 E-value=0.057 Score=33.43 Aligned_cols=119 Identities=23% Similarity=0.359 Sum_probs=71.4
Q ss_pred CCCEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 6670786078-924777651210012038999999999999998862885324588721674166766655565642101
Q gi|254780177|r 89 RGGGYTYHGP-GQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKI 167 (257)
Q Consensus 89 RGG~iTyHGP-GQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KI 167 (257)
|.|. +|+-| |-+-+-.++...........+.-..--++.++|+.+++++..+ |.+ +.....+|+
T Consensus 48 R~gr-~W~Sp~G~l~~S~~l~~~~~~~~~~~l~~~~~lav~~al~~~~~~~~iK------WPN--------DIl~~~kKl 112 (236)
T PRK08330 48 RKGR-KWESPEGGLWMSVVLKPKVSQKDLPKLVFLGALAVVDTLREFSIDARIK------WPN--------DVLVNYRKI 112 (236)
T ss_pred CCCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE------CCC--------CEEECCCEE
T ss_conf 9969-8659999868999933688978888999999999999999839886376------785--------031579779
Q ss_pred EEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 00000004888998899995499135173410567978521289-91898899999999999999874
Q gi|254780177|r 168 AAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVF 234 (257)
Q Consensus 168 asIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~F 234 (257)
|-|=+-.+.-..-=|+.||++.+.. ...||+. .++.+++..++-..+...|.+.+
T Consensus 113 ~GILiE~~~~~vviGIGiNvn~~~p------------~~atsl~~~~~~~~~~~~l~~~l~~~l~~~~ 168 (236)
T PRK08330 113 AGVLVEGKGDFVILGIGLNVNNEAP------------DGATSMKEELGSEVPLLEVFRALITNLDRLY 168 (236)
T ss_pred EEEEEEEECCEEEEEEEEECCCCCC------------CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9997840389799999895598799------------4063799986899999999999999999999
No 12
>KOG0325 consensus
Probab=95.81 E-value=0.00093 Score=45.00 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=41.1
Q ss_pred CEEEEEEC----------------CCEEEECCCCCHHHH----CCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCC
Q ss_conf 78999806----------------873774347885561----05478249980566707860789247776512100
Q gi|254780177|r 54 ELVWLLEH----------------PPLYTSGTSAISDDL----LSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAK 111 (257)
Q Consensus 54 d~l~llEH----------------~pVyT~G~~~~~~dl----l~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~ 111 (257)
..++.|.| +..++-+..... +. -+. ++.++.+.+++.||||| +||.+||.+.+-+
T Consensus 98 ypIidL~~f~~~~r~~Vs~le~~c~~~~i~~~~~t~-~tgvwV~d~-k~aaiGi~vsr~IT~HG-laLN~~tDL~~fn 172 (226)
T KOG0325 98 YPIIDLRHFGFSARCYVSTLEAACPDFGIKGTASTK-DTGVWVGDA-KIAAIGIRVSREITYHG-LALNVNTDLTYFN 172 (226)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCC-CCCEEECCC-EEEEEEEEECCCEEECC-EEEEECCCCCHHH
T ss_conf 899872014654045787887654323420333434-456550477-06799998427474632-5788526755444
No 13
>PRK11886 biotin--protein ligase; Provisional
Probab=95.34 E-value=0.27 Score=29.01 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=75.3
Q ss_pred CCCEEEEECC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 6670786078-92-477765121001203899999999999999886288532458872167416676665556564210
Q gi|254780177|r 89 RGGGYTYHGP-GQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166 (257)
Q Consensus 89 RGG~iTyHGP-GQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~K 166 (257)
|-| =+|+-| |. |-+-.++........+..+--..--++.++|..++......+ |.+ +.....+|
T Consensus 117 R~G-R~W~Sp~g~~Ly~Si~l~p~~~~~~~~~Ltl~~avAv~~al~~~~~~~~~IK-----WPN--------DIli~gkK 182 (319)
T PRK11886 117 RRG-RQWVSPFGGNLYLSLYWRLNQGMAQAMGLSLVVGIAVAEALRRLGAIDVGLK-----WPN--------DIYLNGRK 182 (319)
T ss_pred CCC-CCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE-----CCC--------CCCCCCCE
T ss_conf 997-9066989998899989767989788756369999999999998358762133-----796--------30227962
Q ss_pred CEEHHEECC---CCE--EEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 100000004---888--9988999954991351734105679785212899189889999999999999987461
Q gi|254780177|r 167 IAAIGIRIR---KWI--SFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGP 236 (257)
Q Consensus 167 IasIGi~i~---~~v--T~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257)
||-|=+-.. ..+ .-=|+-||||++- | |=...+...|++.+.|..++.+++-..+.++|...+..
T Consensus 183 i~GIL~E~~~e~~~~~~vViGIGINvn~~~--~----~~~~~~~a~s~l~~~g~~~~r~~ll~~ll~~l~~~~~~ 251 (319)
T PRK11886 183 LAGILVELTGETGDAAHVVIGIGINVAMPD--F----PEELIDQPWSDLQEAGPTIDRNQLAAELWKQLRAALEL 251 (319)
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEECCCCC--C----CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899801110267884179999778615888--8----53342032334887179899999999999999999999
No 14
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase; InterPro: IPR004562 One member of this group of proteins is bovine lipoyltransferase, which transfers the lipoyl group from lipoyl-AMP to the specific Lys of lipoate-dependent enzymes. However, it does not first activate lipoic acid with ATP to create lipoyl-AMP and pyrophosphate. Another member of this group, lipoate-protein ligase A from Escherichia coli, catalyzes both the activation and the transfer of lipoate. Homology between the two is full-length, except for the bovine mitochondrial targeting signal, but is strongest toward the N-terminus..
Probab=89.70 E-value=1.8 Score=23.65 Aligned_cols=196 Identities=17% Similarity=0.198 Sum_probs=127.9
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCC-C--CCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEE
Q ss_conf 980888588999999999999997399-7--878999806873774347885561-----05478249980566707860
Q gi|254780177|r 25 WVMDNPVDYEESQIIMEREIQRISLGN-A--EELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYH 96 (257)
Q Consensus 25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~-~--~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyH 96 (257)
..++-..||-.+ .+.+-.+......+ . ...+++-...++..+|++.+.-.. +..+++.+.+---||+..||
T Consensus 7 ~~~~~~~p~~n~-a~e~~~~~~~~~~~~gpd~~~~~~~~n~~~~~~g~~~n~~~e~~~~~~~~~~~~~~rr~~ggg~~~h 85 (346)
T TIGR00545 7 LTSPSNDPYFNL-ALEEYLFKELPKAERGPDNKVLLFWVNANTIVIGRNQNTWAEVNLKELEEDNVNLLRRFSGGGAVFH 85 (346)
T ss_pred EECCCCCCHHHH-HHHHHHHHCCCCHHCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEH
T ss_conf 202455631345-5676775227700228750489998548646870676503342023431066068763168840100
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC
Q ss_conf 7892477765121001203899999999999999886288532458-872167416676665556564210100000004
Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE-DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR 175 (257)
Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~ 175 (257)
.-|.+-.-.+.. +-+.....-.......++..|...|+++...- .+--+-++. ..+++|+....-++.
T Consensus 86 dlgn~~~~~~~~--~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~r~d~~~~~---------~~gd~k~~g~a~~~~ 154 (346)
T TIGR00545 86 DLGNLCFSFLTP--KDGKEFENAYKKFTRPVIKALNSLGVEAELSGNERNDLVVDT---------VEGDRKISGSAYYIT 154 (346)
T ss_pred HCCCCEEEEEEC--CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEE---------CCCCCCCCCCHHHHH
T ss_conf 003310223206--642135556777778899988742863142366556425640---------256510133022210
Q ss_pred CCEEEEEEEEEECCCCHHH-CCEEEC-----CCCCCCCCCH-------HHHCCC-CCHHHHHHHHHHH-HHH
Q ss_conf 8889988999954991351-734105-----6797852128-------991898-8999999999999-998
Q gi|254780177|r 176 KWISFHGLSLNISPDLSYY-TGIVPC-----GISQHGVTSL-------KELGYS-YSMKYIDTLIRKS-FES 232 (257)
Q Consensus 176 ~~vT~HG~alNv~~dL~~F-~~IvPC-----Gl~~~~vTSl-------~~lg~~-i~~~ev~~~l~~~-f~~ 232 (257)
+.-.+|--.+-.+.|++.+ +.+.|. -+...+++|+ .++-.+ ++..++...+.++ |..
T Consensus 155 ~~~~~~hgtll~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~~f~~ 226 (346)
T TIGR00545 155 KGRGFHHGTLLLDADLSKLAGYLNPSLPDKTKLESKGIKSVRSRVVNVGELLPNKLTTEEFLEELLQKTFFT 226 (346)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 463011012222222788887614345541023221313466553111210577332589999988665410
No 15
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional
Probab=83.88 E-value=3.8 Score=21.58 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC-------------CCEEEEE
Q ss_conf 899999999999999886288532458872167416676665556564210100000004-------------8889988
Q gi|254780177|r 116 LRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR-------------KWISFHG 182 (257)
Q Consensus 116 v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~-------------~~vT~HG 182 (257)
+..+.-..--++.++|..|++.+..+ =---|+++ ++|||-|=+... .-.-.-|
T Consensus 98 ~~~lt~~~a~av~~~l~~~~i~~~ik-wpnd~~~~-------------~kk~~gil~e~~~~~d~~~~~~~~~~~~viiG 163 (288)
T PTZ00275 98 IKCLAQTCTVAISKTIEHFHLRTQIK-WINDVLID-------------EKKIAGCLVHLHYLDDFHFTDILSNYACIICG 163 (288)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC-CCCEEEEC-------------CCEEEEEEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 13579999999999999839853332-78405786-------------84688998652023443322224653599999
Q ss_pred EEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCC----------CCCHHHHHHHHHHHHHHHHCHH
Q ss_conf 99995499135173410567978521289-9189----------8899999999999999874611
Q gi|254780177|r 183 LSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGY----------SYSMKYIDTLIRKSFESVFGPT 237 (257)
Q Consensus 183 ~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~----------~i~~~ev~~~l~~~f~~~Fg~~ 237 (257)
+.|||+.. .. +.+-....||+. ++.. -.+++++...|+.+|...+..-
T Consensus 164 IGINv~~~--~~-----~~~l~~~~tsi~~~l~~~~~~~~~~~~ipsvedll~~Ll~nf~~~~~~l 222 (288)
T PTZ00275 164 IGINIELM--DD-----DNLLGDNFTSIKKELINSQNDFGKFCSIPSVEDVMDKLILNFFATFNKL 222 (288)
T ss_pred EEEEECCC--CC-----CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77731467--53-----2223554546888852453223432357789999999999999999999
No 16
>PRK08477 biotin--protein ligase; Provisional
Probab=77.53 E-value=6.2 Score=20.20 Aligned_cols=111 Identities=22% Similarity=0.252 Sum_probs=56.7
Q ss_pred EEEC-CCCEEEEEEECCCCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEH
Q ss_conf 8607-89247776512100120389999999--99999998862885324588721674166766655565642101000
Q gi|254780177|r 94 TYHG-PGQRIIYIMLNLAKRRKDLRCFVAAL--EEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAI 170 (257)
Q Consensus 94 TyHG-PGQlV~Ypii~L~~~~~~v~~yv~~l--E~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasI 170 (257)
+|+. ||-|-+-.++.......++.-....+ --++.++|+.+|.+. |+.=+|+ ....++|||-|
T Consensus 49 ~W~S~~GnL~~S~~l~~~~~~~~~~~~~~~i~~~~~~~~~l~~~g~~~---------~iKWPND-----I~~~~KKi~GI 114 (214)
T PRK08477 49 SWEGAKGNLFFSFALKESDLPKDLPLQSSSIYFGYLLKEVLKELGSKV---------WLKWPND-----LYLGDKKIGGV 114 (214)
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------EEECCCH-----HEECCCEEEEE
T ss_conf 168699985999997776562103379999999999999999709884---------5868724-----14879558999
Q ss_pred HEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0000488899889999549913517341056797852128991898899999999999999874
Q gi|254780177|r 171 GIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 (257)
Q Consensus 171 Gi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F 234 (257)
=+-.....--=|+.||++..-+.|.. +...++.+++-+.+...|++.+
T Consensus 115 L~e~~~~~iVvGIGiNv~~~p~~~~~----------------ldi~i~~~~ll~~~~~~~e~~~ 162 (214)
T PRK08477 115 ITNKIKNVIVCGIGLNLKSSPENYAC----------------LDIEISDDDLLEGFLQKIEKKI 162 (214)
T ss_pred EEECCCCEEEEEEEECCCCCCCHHHH----------------CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 79805994999665516759503554----------------3834589999999999999887
No 17
>pfam04017 DUF366 Domain of unknown function (DUF366). Archaeal domain of unknown function.
Probab=75.03 E-value=7.2 Score=19.77 Aligned_cols=90 Identities=17% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEE-EEEEECCCCHHHCC
Q ss_conf 99999999999998862885324588721674166766655565642101000000048889988-99995499135173
Q gi|254780177|r 118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHG-LSLNISPDLSYYTG 196 (257)
Q Consensus 118 ~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG-~alNv~~dL~~F~~ 196 (257)
.+-|.|-..+-..|.++|++..|.-+ -+||++ |=.|+-|..+.-+|.-+ ++|||...-.+
T Consensus 82 ~rQRLl~~i~~evl~~~g~~~~r~GD--Dlyv~~--------------~KlSVSIA~~s~vs~kiH~GINV~~~g~P--- 142 (183)
T pfam04017 82 LRQRLLVAIAKEVLEDYGVKLTRDGD--DLYVNG--------------KKLSVSIATASPVSMKIHFGINVTSEGTP--- 142 (183)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEECCC--EEEECC--------------CEEEEEEEECCCCCEEEEEEEEECCCCCC---
T ss_conf 99999999999999972986065578--168759--------------67899999648871589987876046656---
Q ss_pred EEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 410567978521289918988999999999999998746
Q gi|254780177|r 197 IVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 197 IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg 235 (257)
..+.||.+||..- .+++.+.+...|.+.|.
T Consensus 143 --------V~aigL~dlg~~~-~~~~m~~i~~~y~~E~~ 172 (183)
T pfam04017 143 --------VPAIGLEDLGIDD-IKELMEDIASAYVEEIE 172 (183)
T ss_pred --------CCCCCHHHCCCCC-HHHHHHHHHHHHHHHHH
T ss_conf --------5410287738755-99999999999999999
No 18
>pfam07718 Coatamer_beta_C Coatamer beta C-terminal region. This family is found at the N-terminus of the coatamer beta subunit proteins (Beta-coat proteins). This C-terminal domain probably adapts the function of the N-terminal pfam01602 domain.
Probab=54.07 E-value=12 Score=18.36 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=32.1
Q ss_pred EEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCC---CEEEEECCCC-EEEEEEECCCCCCCHHHHHHH
Q ss_conf 99980687377434788556105478249980566---7078607892-477765121001203899999
Q gi|254780177|r 56 VWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRG---GGYTYHGPGQ-RIIYIMLNLAKRRKDLRCFVA 121 (257)
Q Consensus 56 l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RG---G~iTyHGPGQ-lV~Ypii~L~~~~~~v~~yv~ 121 (257)
+=++|.|+.+|++.++...-- -.+-|-.++-| |.|+|+++.. --.|.+ |+..+.++..|++
T Consensus 102 Lklve~p~~~tL~P~~~~~i~---~~iKVsSte~GvIfG~I~yd~~~~~~~~~vv--LndI~IdimDyI~ 166 (279)
T pfam07718 102 LKLVEQPTPFTLAPESFKSFQ---ATVKVSSTENGVIFGNIVYDGGHVMDTNHVI--LNDVHIDIMDYIR 166 (279)
T ss_pred CEECCCCCCEEECCCCEEEEE---EEEEEEEEECCEEEEEEEECCCCCCCCEEEE--ECCCEECHHHHCC
T ss_conf 243157897656898658999---9999965216889999998158887511799--5462441778057
No 19
>KOG1536 consensus
Probab=51.56 E-value=20 Score=16.92 Aligned_cols=126 Identities=21% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCCCEEEEECC-CCEEEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 56670786078-924777651210--012038999999999999998862885324588721674166766655565642
Q gi|254780177|r 88 GRGGGYTYHGP-GQRIIYIMLNLA--KRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIE 164 (257)
Q Consensus 88 ~RGG~iTyHGP-GQlV~Ypii~L~--~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~ 164 (257)
+|||. +|-.| |-+.--+++.+. .+-..+..|+..+--+...-...+ ++++-. .-|.++=+|+.... .-
T Consensus 426 GRGgN-~WlsP~G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~-~pGy~d---IpvrIKWPNDlY~~----~~ 496 (649)
T KOG1536 426 GRGGN-VWLSPKGCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRY-APGYPD---IPVRIKWPNDLYVN----GY 496 (649)
T ss_pred CCCCC-EEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCC---CCEEEECCCCCEEE----EC
T ss_conf 67787-66567334768889982055553440189999999999999860-889998---85464268500353----10
Q ss_pred CCCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCC---CCCCCCHHHHC-----------CCCCHHHHHHHHHHHH
Q ss_conf 101000000048889988999954991351734105679---78521289918-----------9889999999999999
Q gi|254780177|r 165 EKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGIS---QHGVTSLKELG-----------YSYSMKYIDTLIRKSF 230 (257)
Q Consensus 165 ~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~---~~~vTSl~~lg-----------~~i~~~ev~~~l~~~f 230 (257)
.||. |+-+|.+.--+.|.-.+-|||. +...|||+++- ..+..+++...+..+|
T Consensus 497 lKvg-------------GiLv~st~r~n~f~v~iGCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~f 563 (649)
T KOG1536 497 LKVG-------------GILVTSTYRSNKFNVSIGCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKF 563 (649)
T ss_pred CCCC-------------EEEEEEEECCCEEEEEEEEEEEECCCCCCEEHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 1013-------------299875652765899985026715999703598877764421012000014999999999999
Q ss_pred HHHHC
Q ss_conf 98746
Q gi|254780177|r 231 ESVFG 235 (257)
Q Consensus 231 ~~~Fg 235 (257)
++.|.
T Consensus 564 e~~~k 568 (649)
T KOG1536 564 EKYFK 568 (649)
T ss_pred HHHHH
T ss_conf 99999
No 20
>KOG1144 consensus
Probab=43.52 E-value=23 Score=16.56 Aligned_cols=105 Identities=24% Similarity=0.241 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCEEEECCCCCCCCCCCCCCC---------------CCCEEHH-----EE
Q ss_conf 89999999999999988628853--24588721674166766655565642---------------1010000-----00
Q gi|254780177|r 116 LRCFVAALEEVIIRTLKILGIVG--ERREDRVGIWVVRLNKTRDNQLLLIE---------------EKIAAIG-----IR 173 (257)
Q Consensus 116 v~~yv~~lE~~ii~~l~~~gI~~--~~~~~~~GVWV~~~~~~~~~~~~~~~---------------~KIasIG-----i~ 173 (257)
+..|-.++.+ ||.-+++.|+.+ +......|=||.=- ......|.+-. .|++-+- |-
T Consensus 628 ~~EF~~R~~~-ii~efaEQgLN~~LyykNk~~~~~vsiV-PTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVl 705 (1064)
T KOG1144 628 QNEFKERLNN-IIVEFAEQGLNAELYYKNKEMGETVSIV-PTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVL 705 (1064)
T ss_pred HHHHHHHHHH-HHHHHHHCCCCHHHEEECCCCCCEEEEE-ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 9999999999-9999997110443423146746558862-1221367880789999999999999987742401004789
Q ss_pred CCCCEEEEEEEEEE---CCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHH
Q ss_conf 04888998899995---49913517341056797852128991898899999
Q gi|254780177|r 174 IRKWISFHGLSLNI---SPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYI 222 (257)
Q Consensus 174 i~~~vT~HG~alNv---~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev 222 (257)
=-+-+--||.-|.| |--|.-=+.|+-||+.|--||.+..|-.+-.|.|+
T Consensus 706 EVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkEl 757 (1064)
T KOG1144 706 EVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKEL 757 (1064)
T ss_pred EEEEECCCCCEEEEEEECCEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHH
T ss_conf 9875237771689998756552698799827998616888976388644764
No 21
>COG1586 SpeD S-adenosylmethionine decarboxylase [Amino acid transport and metabolism]
Probab=39.54 E-value=26 Score=16.14 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=25.1
Q ss_pred CEEEECCCCCHHH-------HCCCCCCEEEEECCCCEEEEEC
Q ss_conf 7377434788556-------1054782499805667078607
Q gi|254780177|r 63 PLYTSGTSAISDD-------LLSPKSLPVYTTGRGGGYTYHG 97 (257)
Q Consensus 63 pVyT~G~~~~~~d-------ll~~~~ipv~~t~RGG~iTyHG 97 (257)
.|||+|-..++.. .|+++.+.+...+||..-.-.|
T Consensus 89 DVyTCG~~~~p~~A~~yi~~~L~p~~v~v~~~~Rg~~~~~~g 130 (136)
T COG1586 89 DVYTCGDHIDPLKAFNYLVEQLKPKRVTVDYRDRGFTRDILG 130 (136)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
T ss_conf 888158989999999999998598679999970576613256
No 22
>TIGR01608 citD citrate lyase acyl carrier protein; InterPro: IPR006495 This group of sequences represent the acyl carrier protein (gamma subunit) of the holoenzyme citrate lyase (4.1.3.6 from EC) composed of alpha (2.8.3.10 from EC), beta (4.1.3.34 from EC), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The set contains an experimentally characterised member from Leuconostoc mesenteroides . The sequences come from a wide range of Gram-positive bacteria. For Gram-negative bacteria, it appears that only sequences from the gamma proteobacteria are included..
Probab=39.44 E-value=30 Score=15.75 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 899999999999999886288532
Q gi|254780177|r 116 LRCFVAALEEVIIRTLKILGIVGE 139 (257)
Q Consensus 116 v~~yv~~lE~~ii~~l~~~gI~~~ 139 (257)
-+.|=+.|++.+-.||+.|||+..
T Consensus 38 kkQFg~~I~~~vkeTL~~lGv~~a 61 (95)
T TIGR01608 38 KKQFGDEIEKVVKETLKELGVENA 61 (95)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 777579999999998986594435
No 23
>PRK06955 biotin--protein ligase; Provisional
Probab=38.85 E-value=31 Score=15.66 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=66.9
Q ss_pred CCCEEEEECC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE-EEECCCCCCCCCCCCCCCC
Q ss_conf 6670786078-92-4777651210012038999999999999998862885324588721-6741667666555656421
Q gi|254780177|r 89 RGGGYTYHGP-GQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVG-IWVVRLNKTRDNQLLLIEE 165 (257)
Q Consensus 89 RGG~iTyHGP-GQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~G-VWV~~~~~~~~~~~~~~~~ 165 (257)
|-|. +||-| |. |.+-.++........+..+--..--++.++|..+...... ..+ =|-+ +.....+
T Consensus 79 R~GR-~W~Sp~g~~L~~Sl~l~~~~~~~~~~~Lsl~~glAv~~al~~~~~~~~~---~v~LKWPN--------DIlv~gk 146 (300)
T PRK06955 79 RQGR-PWFAQPGNALLFSVACVLPRPVAALAGLSLAVGVALAEALAALPAALGG---RIALKWPN--------DLLIAGR 146 (300)
T ss_pred CCCC-CCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CEEEECCC--------HHEECCC
T ss_conf 9979-0549899988999984599896775226999999999999986520486---10011774--------4246683
Q ss_pred CCEEHHEECC-----CCEEEEEEEEEECCCCHHHCCEE------ECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0100000004-----88899889999549913517341------056797852128991898899999999999999874
Q gi|254780177|r 166 KIAAIGIRIR-----KWISFHGLSLNISPDLSYYTGIV------PCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 (257)
Q Consensus 166 KIasIGi~i~-----~~vT~HG~alNv~~dL~~F~~Iv------PCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F 234 (257)
|||-|=+-.. ....-=|+.|||+.+-.....+. +--..+...+++...+...+..++-..+.++|...+
T Consensus 147 KlaGIL~E~~~~~~~~~~vVIGIGINv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~ 226 (300)
T PRK06955 147 KLAGILIETVWATPDATAVVIGIGLNVRRADALAAAVGALRAGVATLASGLPPAALSAACAGANLTDTLAAALNALAPAL 226 (300)
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 43688534211578861899999996177864211113212354000256770555530254899999999999999999
Q ss_pred CH
Q ss_conf 61
Q gi|254780177|r 235 GP 236 (257)
Q Consensus 235 g~ 236 (257)
..
T Consensus 227 ~~ 228 (300)
T PRK06955 227 AA 228 (300)
T ss_pred HH
T ss_conf 99
No 24
>PRK05761 DNA polymerase I; Reviewed
Probab=35.23 E-value=35 Score=15.30 Aligned_cols=30 Identities=3% Similarity=0.079 Sum_probs=16.2
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 0888588999999999999997399787899
Q gi|254780177|r 27 MDNPVDYEESQIIMEREIQRISLGNAEELVW 57 (257)
Q Consensus 27 ~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~ 57 (257)
..+.++..+--++.+++++-+.+ ..+|.+|
T Consensus 189 ~~~~~p~~sE~elL~~f~~~i~~-~DPDIiy 218 (777)
T PRK05761 189 QSGRIPDDSEKELLAELFKIIED-YPPVITF 218 (777)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH-CCCCEEE
T ss_conf 88858899999999999999974-6982998
No 25
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=35.05 E-value=34 Score=15.42 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=14.0
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5121001203899999999999999886288
Q gi|254780177|r 106 MLNLAKRRKDLRCFVAALEEVIIRTLKILGI 136 (257)
Q Consensus 106 ii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI 136 (257)
++||-.-+.++-.=...|++.+.++++..|.
T Consensus 8 i~dl~~c~~~~L~d~~~l~~~~~~a~~~~~~ 38 (112)
T PRK01236 8 IADLYGVDAELIDREEDIRPILEGAVKYGEL 38 (112)
T ss_pred EEEEECCCHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999877936667999999999999998599
No 26
>pfam04592 SelP_N Selenoprotein P, N terminal region. SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the
Probab=34.99 E-value=35 Score=15.34 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=27.2
Q ss_pred EEEECCCEEEECCCCCHH-HHCCCCCCEEEEECCCCEEEEECC
Q ss_conf 998068737743478855-610547824998056670786078
Q gi|254780177|r 57 WLLEHPPLYTSGTSAISD-DLLSPKSLPVYTTGRGGGYTYHGP 98 (257)
Q Consensus 57 ~llEH~pVyT~G~~~~~~-dll~~~~ipv~~t~RGG~iTyHGP 98 (257)
++.||-|||---....+. .+|+.++=.+.--||-|..|||=+
T Consensus 85 ~vse~ipvYqq~~~q~DVW~~L~G~KDDfLIYDRCGrL~yHl~ 127 (238)
T pfam04592 85 RVSEHIPVYQQEENQPDVWTLLNGNKDDFLIYDRCGRLTYHLG 127 (238)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEECC
T ss_conf 6226776223476665678872688675788852475677406
No 27
>PRK01706 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=33.65 E-value=34 Score=15.43 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999999988628
Q gi|254780177|r 120 VAALEEVIIRTLKILG 135 (257)
Q Consensus 120 v~~lE~~ii~~l~~~g 135 (257)
...|++.+.+++...|
T Consensus 25 ~~~l~~~l~~a~~~~~ 40 (123)
T PRK01706 25 MYFLEHHLVHAADLSG 40 (123)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999999869
No 28
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=33.50 E-value=15 Score=17.74 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=47.4
Q ss_pred CCCCCEEEEECCCCEEE--EECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
Q ss_conf 54782499805667078--60789247776512100120389999999999999988628853245887216741
Q gi|254780177|r 78 SPKSLPVYTTGRGGGYT--YHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVV 150 (257)
Q Consensus 78 ~~~~ipv~~t~RGG~iT--yHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~ 150 (257)
..+|=+++=.|+||-+| |--|+|=|+=-=+|=+=...|+ +....+..=-+.+|+.=||-+.....==-||+
T Consensus 233 R~rGd~AIiYDkgC~f~~~fyd~~~DviLNP~D~RCA~Wd~--W~Ec~~~~dFen~A~~LIPm~~~~smDPFW~~ 305 (613)
T TIGR02759 233 RQRGDRAIIYDKGCTFVSRFYDPSQDVILNPLDERCANWDV--WRECKDKTDFENMAEALIPMHGDGSMDPFWVD 305 (613)
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 86398589982574202132688887460674435554883--50358898878999983889888887712243
No 29
>KOG2181 consensus
Probab=32.82 E-value=35 Score=15.30 Aligned_cols=50 Identities=28% Similarity=0.406 Sum_probs=31.1
Q ss_pred EEC-CCEEEECCCCCHH-----------HH---C------CCCCCEEEEECCCCEEEEEC---------CCCEEEEEEEC
Q ss_conf 806-8737743478855-----------61---0------54782499805667078607---------89247776512
Q gi|254780177|r 59 LEH-PPLYTSGTSAISD-----------DL---L------SPKSLPVYTTGRGGGYTYHG---------PGQRIIYIMLN 108 (257)
Q Consensus 59 lEH-~pVyT~G~~~~~~-----------dl---l------~~~~ipv~~t~RGG~iTyHG---------PGQlV~Ypii~ 108 (257)
||- |.-||+||.--+. +| | -.++.-.+..|-+-+||-|| .|-|++-+.+|
T Consensus 93 lEdgpkRYtIgRtlIPrfFrsIfegG~~eLyyvLkh~ket~hn~s~~~dcdq~~~iTqhgkp~ft~VctegrL~lEF~fD 172 (415)
T KOG2181 93 LEDGPKRYTIGRTLIPRFFRSIFEGGMRELYYVLKHPKETLHNGSQAYDCDQVLQITQHGKPSFTEVCTEGRLYLEFAFD 172 (415)
T ss_pred ECCCCCEEEECCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCCEEEECCCEEEEEECCCCCCEEEECCCEEEEEEEHH
T ss_conf 15786305654113388999987252243165551855553277356513533577534874013561365388874112
No 30
>PRK02770 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=31.52 E-value=40 Score=14.91 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998862885
Q gi|254780177|r 120 VAALEEVIIRTLKILGIV 137 (257)
Q Consensus 120 v~~lE~~ii~~l~~~gI~ 137 (257)
...|++.+.++++..|..
T Consensus 36 ~~~l~~~l~~a~~~~g~t 53 (139)
T PRK02770 36 EAFLRTTLTEAAKRAGAT 53 (139)
T ss_pred HHHHHHHHHHHHHHCCCE
T ss_conf 999999999999987997
No 31
>PRK10598 hypothetical protein; Provisional
Probab=31.19 E-value=32 Score=15.53 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=12.7
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 51210012038999999999999998862
Q gi|254780177|r 106 MLNLAKRRKDLRCFVAALEEVIIRTLKIL 134 (257)
Q Consensus 106 ii~L~~~~~~v~~yv~~lE~~ii~~l~~~ 134 (257)
++|..--+.+...-+..+-.-+.+.|+.|
T Consensus 118 L~~~~~~P~~~~~~l~~l~p~l~~~L~~~ 146 (186)
T PRK10598 118 LVDATVQPEKMQTVMQTLLPYLNQSLRSY 146 (186)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87602698999888998899999999998
No 32
>TIGR03330 SAM_DCase_Bsu S-adenosylmethionine decarboxylase proenzyme, Bacillus form. Members of this protein family are the single chain precursor of the two chains of the mature S-adenosylmethionine decarboxylase as found in Methanocaldococcus jannaschii, Bacillus subtilis, and a wide range of other species. It differs substantially in architecture from the form as found in Escherichia coli, and lacks any extended homology to the eukaryotic form (TIGR00535).
Probab=29.69 E-value=43 Score=14.71 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=17.8
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 651210012038999999999999998862885
Q gi|254780177|r 105 IMLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137 (257)
Q Consensus 105 pii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~ 137 (257)
.++||-.-..++-.=...|++.+.+++...|.+
T Consensus 7 li~Dl~gc~~~~L~d~~~l~~~l~~a~~~~~~~ 39 (112)
T TIGR03330 7 LIVDLYGCDPEKLDDVEFIEEILLEAAKVAGAT 39 (112)
T ss_pred EEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999997779578779999999999999986997
No 33
>pfam10106 DUF2345 Uncharacterized protein conserved in bacteria (DUF2345). Members of this family are found in various bacterial hypothetical proteins, as well as Rhs element Vgr proteins.
Probab=29.33 E-value=38 Score=15.10 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.0
Q ss_pred EEEECCCCEEEEECCCCEEEEE
Q ss_conf 9980566707860789247776
Q gi|254780177|r 84 VYTTGRGGGYTYHGPGQRIIYI 105 (257)
Q Consensus 84 v~~t~RGG~iTyHGPGQlV~Yp 105 (257)
.++. -||+|+.|.||.+.++-
T Consensus 126 yi~l-~gg~I~~~~pG~~~vka 146 (156)
T pfam10106 126 YIRL-EGGGIELGTPGKFTVKA 146 (156)
T ss_pred EEEE-ECCCEEECCCCCEEEEE
T ss_conf 9999-59978971896279997
No 34
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=29.13 E-value=41 Score=14.87 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.6
Q ss_pred EEEEEECCCEEEECCC
Q ss_conf 8999806873774347
Q gi|254780177|r 55 LVWLLEHPPLYTSGTS 70 (257)
Q Consensus 55 ~l~llEH~pVyT~G~~ 70 (257)
++.+|+||..+|+|=+
T Consensus 342 ~~vVL~HP~~ItvGYt 357 (445)
T TIGR00483 342 QIVVLQHPGAITVGYT 357 (445)
T ss_pred EEEEECCCCEEEECCC
T ss_conf 7999728976773565
No 35
>PRK03124 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=28.71 E-value=45 Score=14.61 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999998862
Q gi|254780177|r 120 VAALEEVIIRTLKIL 134 (257)
Q Consensus 120 v~~lE~~ii~~l~~~ 134 (257)
...|++.+.++...-
T Consensus 23 ~~~l~~~l~~a~~~~ 37 (127)
T PRK03124 23 MEFIEDIMVDAALKA 37 (127)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999984
No 36
>PRK00458 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=26.10 E-value=50 Score=14.31 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=13.3
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5121001203899999999999999886288
Q gi|254780177|r 106 MLNLAKRRKDLRCFVAALEEVIIRTLKILGI 136 (257)
Q Consensus 106 ii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI 136 (257)
|+||-.-..++-.=+..|++.+.+....-|.
T Consensus 20 i~dlygc~~~~L~d~~~i~~~l~~a~~~~~a 50 (127)
T PRK00458 20 YGNLYGCDEELLKDEERLETIVKEAAKIANM 50 (127)
T ss_pred EEEEECCCHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999888958978999999999999998699
No 37
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=25.83 E-value=27 Score=16.04 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=7.1
Q ss_pred CCCEEEEEEECCC
Q ss_conf 8924777651210
Q gi|254780177|r 98 PGQRIIYIMLNLA 110 (257)
Q Consensus 98 PGQlV~Ypii~L~ 110 (257)
-|.|++||++|++
T Consensus 564 ~G~LaGyP~vD~k 576 (705)
T TIGR00484 564 SGPLAGYPVVDIK 576 (705)
T ss_pred CCCEECCCEEEEE
T ss_conf 6973214347647
No 38
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=23.55 E-value=48 Score=14.43 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=8.1
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 88588999999999999
Q gi|254780177|r 29 NPVDYEESQIIMEREIQ 45 (257)
Q Consensus 29 G~v~Y~~al~~q~~~~~ 45 (257)
|--.|++..+.|+.+.+
T Consensus 3 ~Y~~~~ei~~~l~~la~ 19 (295)
T cd03859 3 GYHNYLEMVDELNAAAA 19 (295)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 88899999999999998
No 39
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=23.48 E-value=52 Score=14.17 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780177|r 218 SMKYIDTLIRKSFES 232 (257)
Q Consensus 218 ~~~ev~~~l~~~f~~ 232 (257)
+-.|+...+.+...+
T Consensus 212 sK~eiA~~i~~~i~k 226 (228)
T PRK06732 212 TKEEIADLLYERIEK 226 (228)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999999999973
No 40
>COG0692 Ung Uracil DNA glycosylase [DNA replication, recombination, and repair]
Probab=23.43 E-value=22 Score=16.65 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=14.3
Q ss_pred EEECCCCEEEEECCCCEEEE
Q ss_conf 98056670786078924777
Q gi|254780177|r 85 YTTGRGGGYTYHGPGQRIIY 104 (257)
Q Consensus 85 ~~t~RGG~iTyHGPGQlV~Y 104 (257)
+++===||=-||||||-.+-
T Consensus 56 vKVVIlGQDPYh~p~qAhGL 75 (223)
T COG0692 56 VKVVILGQDPYHGPGQAHGL 75 (223)
T ss_pred EEEEEEECCCCCCCCCCCEE
T ss_conf 38999826999998841126
No 41
>KOG2232 consensus
Probab=23.06 E-value=57 Score=13.94 Aligned_cols=44 Identities=34% Similarity=0.560 Sum_probs=33.1
Q ss_pred CEEEEECCC---CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 707860789---24777651210012038999999999999998862
Q gi|254780177|r 91 GGYTYHGPG---QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL 134 (257)
Q Consensus 91 G~iTyHGPG---QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~ 134 (257)
|--|--||| |-++|.|-.|.--+......|..||++|+.+-..+
T Consensus 121 GtHTHagPgGylqy~~y~vtslGFv~QsF~~mv~Gi~~sI~qAhenl 167 (734)
T KOG2232 121 GTHTHAGPGGYLQYVLYIVTSLGFVRQSFDVMVDGIEQSIIQAHENL 167 (734)
T ss_pred CCCCCCCCCCEEEEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 21036788641555223101214406779999989999999997267
No 42
>KOG4179 consensus
Probab=22.88 E-value=57 Score=13.92 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCE-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6670786078924-77765121001203899999999999999886
Q gi|254780177|r 89 RGGGYTYHGPGQR-IIYIMLNLAKRRKDLRCFVAALEEVIIRTLKI 133 (257)
Q Consensus 89 RGG~iTyHGPGQl-V~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~ 133 (257)
+--+|-.|---|. -+|+...++. ...+..=+.+|-..+++.|.+
T Consensus 225 ~~aGIql~~cN~~~yGy~~~Plkp-~qtleedrvnl~~~i~e~L~d 269 (568)
T KOG4179 225 KNAGIQLHACNQVNYGYFVNPLKP-HQTLEEDRVNLIHQIAEALAD 269 (568)
T ss_pred CCCCCEEEEECCCCCCEECCCCCC-CCCHHHHHHHHHHHHHHHHHC
T ss_conf 356853787034232201167887-863677888899999998714
No 43
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=22.72 E-value=56 Score=14.00 Aligned_cols=21 Identities=52% Similarity=0.966 Sum_probs=9.9
Q ss_pred CCE-EEEECCCCEEEEECCCCEEEE
Q ss_conf 824-998056670786078924777
Q gi|254780177|r 81 SLP-VYTTGRGGGYTYHGPGQRIIY 104 (257)
Q Consensus 81 ~ip-v~~t~RGG~iTyHGPGQlV~Y 104 (257)
++| |.+|.||| |-|-||.++.
T Consensus 140 g~P~vlKt~~~G---YDGKGq~~i~ 161 (377)
T PRK06019 140 GLPAVLKTRRGG---YDGKGQWVLR 161 (377)
T ss_pred CCCEEEECCCCC---CCCCCCEEEC
T ss_conf 997699513346---1887018977
No 44
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=22.56 E-value=30 Score=15.72 Aligned_cols=35 Identities=14% Similarity=0.004 Sum_probs=26.5
Q ss_pred EEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH
Q ss_conf 89988999954991351734105679785212899
Q gi|254780177|r 178 ISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE 212 (257)
Q Consensus 178 vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~ 212 (257)
=|+|-+-+=.+-+|-.+..|+---+.+...||++.
T Consensus 109 dt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~ 143 (164)
T COG3760 109 DTENRVKIVLDQALMDDDLINFHPLSNTATTSIAS 143 (164)
T ss_pred CCCCEEEEEEHHHHHHCCCCCCCCCCCCCCEEEHH
T ss_conf 75310899982764315430556677730000258
No 45
>PRK04025 S-adenosylmethionine decarboxylase proenzyme; Validated
Probab=22.41 E-value=59 Score=13.86 Aligned_cols=14 Identities=14% Similarity=0.458 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999886
Q gi|254780177|r 120 VAALEEVIIRTLKI 133 (257)
Q Consensus 120 v~~lE~~ii~~l~~ 133 (257)
...|++.+.++++.
T Consensus 23 ~~~i~~~~~~Aa~~ 36 (139)
T PRK04025 23 ADKIREIFLEAAKV 36 (139)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 46
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative; InterPro: IPR006451 These sequences are largely uncharacterised archaeal proteins which include those from Methanosarcina acetivorans and Sulfolobus solfataricus. The group also contains sequences from the Gram-positive bacterium Clostridium perfringens and the Cyanobacterium Nostoc sp. All the sequences display weak relatedness to the characterised eukaryotic glycogen debranching enzyme of S. cerevisiae. .
Probab=22.24 E-value=59 Score=13.84 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=31.4
Q ss_pred EEEEEEECCCCHHHCCEEECCCCCCCCCCH--HHHCCCCC-HHHHHHHHHHHHHHHH
Q ss_conf 889999549913517341056797852128--99189889-9999999999999874
Q gi|254780177|r 181 HGLSLNISPDLSYYTGIVPCGISQHGVTSL--KELGYSYS-MKYIDTLIRKSFESVF 234 (257)
Q Consensus 181 HG~alNv~~dL~~F~~IvPCGl~~~~vTSl--~~lg~~i~-~~ev~~~l~~~f~~~F 234 (257)
-|-|.-||. | ||+ ..++||. .+||-+++ .++..+.+++.|++.|
T Consensus 422 ~G~A~E~NA-L-WYN--------AL~~~~yl~~~LGE~~~~~~~~A~~V~~~F~~~F 468 (575)
T TIGR01561 422 EGKAVEVNA-L-WYN--------ALKVAEYLLTLLGEDIEYLEEKAESVKKSFEEKF 468 (575)
T ss_pred CCCEEEEHH-H-HHH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 887477434-5-766--------8999999877504205688888788875455303
No 47
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=22.22 E-value=58 Score=13.90 Aligned_cols=90 Identities=29% Similarity=0.359 Sum_probs=55.4
Q ss_pred CCCE-EEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 7824-998056670786078924777651210012038999999999999998862885324588721674166766655
Q gi|254780177|r 80 KSLP-VYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDN 158 (257)
Q Consensus 80 ~~ip-v~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~ 158 (257)
-+.| |.++.||| |-|-||.++--.-++... .+.+...+.. . .==||
T Consensus 133 ~g~p~VlKtr~gG---YDGkGQ~~i~~~~~~~~~---------------~~~~~~~~~~--v----lE~fV--------- 179 (375)
T COG0026 133 LGFPAVLKTRRGG---YDGKGQWRIRSDADLELR---------------AAGLAEGGVP--V----LEEFV--------- 179 (375)
T ss_pred CCCCEEEEECCCC---CCCCCEEEEECCCCCHHH---------------HHHHHCCCCE--E----EEEEC---------
T ss_conf 5995699832265---668870894070102356---------------7665136863--6----88603---------
Q ss_pred CCCCCCCCCEEHHEECCCC-EEEEEEEEEECCCCHHHCCEEECCCCCC
Q ss_conf 5656421010000000488-8998899995499135173410567978
Q gi|254780177|r 159 QLLLIEEKIAAIGIRIRKW-ISFHGLSLNISPDLSYYTGIVPCGISQH 205 (257)
Q Consensus 159 ~~~~~~~KIasIGi~i~~~-vT~HG~alNv~~dL~~F~~IvPCGl~~~ 205 (257)
..++-|.-|+.|-.++ ++++=.+=|+.-|-=.+..|.|+.++..
T Consensus 180 ---~F~~EiSvi~aR~~~G~~~~yP~~eN~h~~gIl~~siaPa~i~~~ 224 (375)
T COG0026 180 ---PFEREISVIVARSNDGEVAFYPVAENVHRNGILRTSIAPARIPDD 224 (375)
T ss_pred ---CCCEEEEEEEEECCCCCEEEECCCCEEEECCEEEEEEECCCCCHH
T ss_conf ---566489999998589978980662101336789999723768989
No 48
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=21.91 E-value=58 Score=13.89 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=18.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 47776512100120389999999
Q gi|254780177|r 101 RIIYIMLNLAKRRKDLRCFVAAL 123 (257)
Q Consensus 101 lV~Ypii~L~~~~~~v~~yv~~l 123 (257)
|==|||+++.+|.--+|+||+.+
T Consensus 330 LKhYFiv~FPQRpGALreFln~v 352 (415)
T TIGR02079 330 LKHYFIVRFPQRPGALREFLNDV 352 (415)
T ss_pred CCEEEEECCCCCCCHHHHHHHHH
T ss_conf 70368752789886368876540
No 49
>KOG3045 consensus
Probab=21.39 E-value=44 Score=14.69 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHH-HCCEEECCCCCCC---------CCCHHHHCCCCC--HHHHHHHH
Q ss_conf 6564210100000004888998899995499135-1734105679785---------212899189889--99999999
Q gi|254780177|r 160 LLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSY-YTGIVPCGISQHG---------VTSLKELGYSYS--MKYIDTLI 226 (257)
Q Consensus 160 ~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~-F~~IvPCGl~~~~---------vTSl~~lg~~i~--~~ev~~~l 226 (257)
..+++.|||+ +.++-| | +.||-. =+.|++|.|.+.. |-.|+=+|.++- +.|+..+|
T Consensus 187 ~GCGEakiA~---~~~~kV--~------SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiL 254 (325)
T KOG3045 187 FGCGEAKIAS---SERHKV--H------SFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLMGTNLADFIKEANRIL 254 (325)
T ss_pred CCCCHHHHHH---CCCCCE--E------EEEEECCCCCEEECCCCCCCCCCCCCCEEEEEHHHHCCCHHHHHHHHHHHH
T ss_conf 3664233320---466650--4------663002788535322447867667544787527553433899999998873
No 50
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=21.39 E-value=61 Score=13.73 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=17.9
Q ss_pred CCCEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 782499805667078607892477765
Q gi|254780177|r 80 KSLPVYTTGRGGGYTYHGPGQRIIYIM 106 (257)
Q Consensus 80 ~~ipv~~t~RGG~iTyHGPGQlV~Ypi 106 (257)
.++++....||.++.|-|-..-|.+|.
T Consensus 136 ~~~~~~~~~~G~~~~~~~~~f~vl~P~ 162 (293)
T COG2333 136 AGIPVRSCKAGDSWQWGGVVFQVLSPV 162 (293)
T ss_pred CCCCEECCCCCCEEEECCEEEEEECCC
T ss_conf 377412001275478888579997688
No 51
>pfam06641 consensus
Probab=20.74 E-value=50 Score=14.33 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=24.4
Q ss_pred CCEEEECCCCC--------HHHH-CCCCCCEEEEECCCCEEEEECCC
Q ss_conf 87377434788--------5561-05478249980566707860789
Q gi|254780177|r 62 PPLYTSGTSAI--------SDDL-LSPKSLPVYTTGRGGGYTYHGPG 99 (257)
Q Consensus 62 ~pVyT~G~~~~--------~~dl-l~~~~ipv~~t~RGG~iTyHGPG 99 (257)
|.-=|+|.+-+ +.|+ |++.--.|+.-|.||.+|=||+-
T Consensus 83 psdgtigkrvsntr~wae~~ddiqldp~vtdvvyhdhggectg~gfs 129 (406)
T pfam06641 83 PSDGTIGKRVSNTRAWAEDPDDIQLDPMVTDVVYHDHGGECTGHGFS 129 (406)
T ss_pred CCCCCHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 88874200023520012488643026523345662478743366778
No 52
>pfam02675 AdoMet_dc S-adenosylmethionine decarboxylase. This family contains several S-adenosylmethionine decarboxylase proteins from bacterial and archaebacterial species. S-adenosylmethionine decarboxylase (AdoMetDC), a key enzyme in the biosynthesis of spermidine and spermine, is first synthesized as a proenzyme, which is cleaved post translationally to form alpha and beta subunits. The alpha subunit contains a covalently bound pyruvoyl group derived from serine that is essential for activity.
Probab=20.27 E-value=65 Score=13.58 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=17.2
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 51210012038999999999999998862885
Q gi|254780177|r 106 MLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137 (257)
Q Consensus 106 ii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~ 137 (257)
++||-.-..++-.=...|++.+.+++...|.+
T Consensus 3 ~~dl~gc~~~~L~d~~~i~~~l~~a~~~~~~t 34 (107)
T pfam02675 3 IADLYGCDADLLNDAERLERILREAAKAAGAT 34 (107)
T ss_pred EEEEECCCHHHCCCHHHHHHHHHHHHHHCCCE
T ss_conf 99997888467879999999999999987998
Done!