HHsearch alignment of GI: 254780177 and MMDB domain: 1vqz_A_1-49_92-251
>1vqz_A (A:1-49,A:92-251) Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
Probab=98.81 E-value=6e-08 Score=71.80 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=115.1
Q ss_pred ECCCEEEECCCCCHH-----------HHCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 068737743478855-----------610547824998056670786078924777651210012038999999999999
Q gi|254780177|r 60 EHPPLYTSGTSAISD-----------DLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVII 128 (257)
Q Consensus 60 EH~pVyT~G~~~~~~-----------dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii 128 (257)
.|-.-|-+..+.... ++|+.+.+-+.+.+ |+|-.-.|++........ -..+-+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------GnLnySli~p~~~~~~~~---y~~l~~~I~ 76 (209)
T 1vqz_A 10 HHHXKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWIN----------NNLNYTIISKEDENKAFD---FKSFSTPVI 76 (209)
T ss_dssp --CEEEEECCCCCHHHHHHHHHHHHHHCTTCSEEEEEECC----------TEEEEEEEEECCTTCCCS---HHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC----------CCEEEEEEECCCCCCHHH---HHHHHHHHH
T ss_conf 5427999779999899999999999537889978999826----------967999997365442200---999999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCE---EECCCC--
Q ss_conf 998862885324588721674166766655565642101000000048889988999954991351734---105679--
Q gi|254780177|r 129 RTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGI---VPCGIS-- 203 (257)
Q Consensus 129 ~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~I---vPCGl~-- 203 (257)
++|+.+||++.... .-.+++++ +||+-.+.++++++.+|..+|.+++|++..... -|.++.
T Consensus 77 ~aL~~lGI~a~~~g-~nDI~i~g-------------kKIsGsAq~~~~~~~l~HgTIlvd~D~~~l~~~L~~~~ek~~~k 142 (209)
T 1vqz_A 77 NTLAQLGVKAEFTG-RNDLEIDG-------------KKFCGNAQAYINGRIXHHGCLLFDVDLSVLANALKVSKDKFESK 142 (209)
T ss_dssp HHHHHTTCCEEEET-TTEEEETT-------------EEEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEEC
T ss_pred HHHHHHCCCEEECC-CCCCEECC-------------CEEEEEEEEEECCEEEEEEEEEECCCHHHHHHHHCCCCCCHHHC
T ss_conf 99997345538714-78740068-------------18865334340847999868860699999998708994020221
Q ss_pred -----CCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHH
Q ss_conf -----785212899-1898899999999999999874611102331
Q gi|254780177|r 204 -----QHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYA 243 (257)
Q Consensus 204 -----~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~ 243 (257)
...||||.+ +|.+++++++...|++.|.+.|+.....+.+
T Consensus 143 ~~~s~~~~vtsL~e~lg~~is~e~l~~aL~e~~~~~~~~~~~~~lt 188 (209)
T 1vqz_A 143 GVKSVRARVTNIINELPKKITVEKFRDLLLEYXKKEYPEXTEYVFS 188 (209)
T ss_dssp SCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTCEECCCC
T ss_pred CCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 5553465542189774899999999999999999863877522379