Query gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 257
No_of_seqs 124 out of 1284
Neff 4.9
Searched_HMMs 33803
Date Mon May 23 02:04:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2p0l_A Lipoate-protein ligase 100.0 9E-35 2.7E-39 245.9 16.6 227 11-243 3-255 (288)
2 >2p5i_A BH3822 protein; PFAM03 100.0 6.1E-35 1.8E-39 247.0 14.6 222 14-242 7-255 (288)
3 >2e5a_A Lipoyltransferase 1; l 100.0 2.8E-33 8.3E-38 236.2 20.3 202 19-239 2-218 (246)
4 >1w66_A Lipoyltransferase; lip 100.0 2.2E-31 6.4E-36 223.9 24.0 220 17-250 9-229 (232)
5 >3a7r_A Lipoate-protein ligase 100.0 1.2E-31 3.6E-36 225.6 18.6 200 22-240 3-217 (244)
6 >2c8m_A Lipoate-protein ligase 100.0 2.2E-31 6.4E-36 223.9 17.8 209 25-240 6-228 (262)
7 >2qhs_A Lipoyltransferase; glo 100.0 2.8E-29 8.3E-34 210.2 23.7 221 3-239 2-230 (237)
8 >2dxu_A Biotin--[acetyl-COA-ca 99.8 2.2E-20 6.6E-25 152.4 9.9 176 47-248 4-182 (187)
9 >1vqz_A Lipoate-protein ligase 98.8 6E-08 1.8E-12 71.8 10.5 157 60-243 10-188 (209)
10 >2ej9_A Putative biotin ligase 98.8 1.6E-07 4.7E-12 69.0 11.2 131 87-236 38-169 (191)
11 >3bfm_A Biotin protein ligase- 96.6 0.065 1.9E-06 32.6 11.9 129 88-239 36-176 (191)
12 >2cgh_A Biotin ligase; 1.8A {M 96.3 0.087 2.6E-06 31.8 10.6 123 89-235 71-201 (221)
13 >2eay_A Biotin [acetyl-COA-car 95.7 0.17 5.2E-06 29.8 12.4 124 89-236 40-167 (185)
14 >1bia_A BIRA bifunctional prot 94.0 0.5 1.5E-05 26.9 9.0 127 88-236 53-188 (207)
15 >1vqz_A Lipoate-protein ligase 77.7 2.7 7.9E-05 22.2 3.6 36 62-97 1-41 (42)
16 >2ddz_A 190AA long hypothetica 52.4 17 0.00049 17.0 8.9 86 122-234 90-176 (190)
17 >2vs7_A I-DMOI, homing endonuc 51.4 13 0.00039 17.7 2.9 28 123-150 14-43 (79)
18 >3d85_D IL-12B, interleukin-12 48.2 12 0.00037 17.8 2.3 25 87-111 60-84 (99)
19 >3fxt_A Nucleoside diphosphate 41.3 20 0.0006 16.4 2.5 69 84-184 26-98 (113)
20 >2iut_A DNA translocase FTSK; 28.0 40 0.0012 14.5 2.5 31 116-146 87-117 (182)
21 >1u7z_A Coenzyme A biosynthesi 25.0 45 0.0013 14.2 2.9 134 87-235 45-221 (226)
22 >1uj6_A Ribose 5-phosphate iso 23.8 31 0.00093 15.2 1.1 62 125-187 16-80 (80)
23 >2ius_A DNA translocase FTSK; 23.1 44 0.0013 14.3 1.7 30 117-146 41-70 (135)
No 1
>>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:)
Probab=100.00 E-value=9e-35 Score=245.88 Aligned_cols=227 Identities=13% Similarity=0.032 Sum_probs=198.5
Q ss_pred HHCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-------HCCCCCC
Q ss_conf 1003557897238998-0888588999999999999997399787899980687377434788556-------1054782
Q gi|254780177|r 11 TSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-------LLSPKSL 82 (257)
Q Consensus 11 ~~~~p~~~~~~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-------ll~~~~i 82 (257)
.|.-.++.++...|++ ..|..||...+++++.+.+.+.+++.+++|++.||+|++|+|++.+.++ .+...++
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~~~~~~~~la~d~~ll~~~~~~~~~~~l~~~~~~p~v~lG~~q~~~~~~~~~~~~~~~~gi 82 (288)
T 2p0l_A 3 LEWQDLAQLPVSIFKDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPXTKTVILGXLDRELPHLELAKKEIISRGY 82 (288)
T ss_dssp -CGGGGTTSCEEEEECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTC
T ss_pred CCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 53776743857888544687546546668999999985157899789996389989989876768119999999998699
Q ss_pred EEEEECCCCEEEEECCCCEEEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 49980566707860789247776512100-12038999999999999998862885324588721674166766655565
Q gi|254780177|r 83 PVYTTGRGGGYTYHGPGQRIIYIMLNLAK-RRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL 161 (257)
Q Consensus 83 pv~~t~RGG~iTyHGPGQlV~Ypii~L~~-~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~ 161 (257)
||++..+||++|||+|||++.|+|++... .+.+++.++..++++++++|+.+|+++...+...|+|+.+++ ..
T Consensus 83 ~vvrR~tGGgaV~hd~G~l~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~L~~lGi~a~~~~~~~~~~~~~~d------i~ 156 (288)
T 2p0l_A 83 EPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIXVDFIRSIFSDFYQPIEHFEVETSYCPGKFD------LS 156 (288)
T ss_dssp EEEECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTC------EE
T ss_pred CEEEECCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC------EE
T ss_conf 489964898648977995699999626654678989999999999999999719751773255665788665------78
Q ss_pred CCCCCCEEHHEECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCCCC------------CCHHH-HCCCCCHHHHHH
Q ss_conf 64210100000004888998899995499135----17341056797852------------12899-189889999999
Q gi|254780177|r 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQHGV------------TSLKE-LGYSYSMKYIDT 224 (257)
Q Consensus 162 ~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~~v------------TSl~~-lg~~i~~~ev~~ 224 (257)
...+||+++|.++++++++||.+||+++|++. |+.|.||++.++.+ ||+.+ ++.+++++++.+
T Consensus 157 ~~g~KI~G~aq~~~~~~~l~~gsl~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~ 236 (288)
T 2p0l_A 157 INGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQXISDFYKIGLGDTGSPIAYPNVDPEIXANLSDLLDCPXTVEDVID 236 (288)
T ss_dssp ETTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHH
T ss_pred ECCEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEHHHHCCCCCCHHHHHH
T ss_conf 88887899899983893999999999788789889998877640254455434677555552219997399999999999
Q ss_pred HHHHHHHHHHCHHHHCHHH
Q ss_conf 9999999874611102331
Q gi|254780177|r 225 LIRKSFESVFGPTILHEYA 243 (257)
Q Consensus 225 ~l~~~f~~~Fg~~~~~~~~ 243 (257)
.+.+.|.+.|+.....+++
T Consensus 237 ~l~~~~~~~~~~~~~~~l~ 255 (288)
T 2p0l_A 237 RXLISLKQVGFNDRLLXIR 255 (288)
T ss_dssp HHHHHHHHHTCCEEECCCC
T ss_pred HHHHHHHHHCCCCCCCCCC
T ss_conf 9999999865877622069
No 2
>>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} (A:)
Probab=100.00 E-value=6.1e-35 Score=246.97 Aligned_cols=222 Identities=14% Similarity=0.005 Sum_probs=191.7
Q ss_pred CCCCCCCCEEEE---EECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHH-------HHCCCCCCE
Q ss_conf 355789723899---8088858899999999999999739978789998068737743478855-------610547824
Q gi|254780177|r 14 FPMENISPIRWW---VMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISD-------DLLSPKSLP 83 (257)
Q Consensus 14 ~p~~~~~~ie~~---~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~-------dll~~~~ip 83 (257)
+|+..+.+.+|. ...|.+||...+++++.+.+++.+++.+++|++.+|+|+||+|++.+.+ +.+...++|
T Consensus 7 ~~~~~~~~~r~i~~~~~~~~~~~~~~la~ee~Ll~~~~~~~~~~~l~~~~~~p~v~iG~~q~~~~~~~~~~~~~~~~gi~ 86 (288)
T 2p5i_A 7 LQQHLSQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHD 86 (288)
T ss_dssp -------CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCE
T ss_pred HHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 68874388899846887778797887699999999864589998899995399899898777675478999999974991
Q ss_pred EEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99805667078607892477765121001203899999999999999886288532458872167416676665556564
Q gi|254780177|r 84 VYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLI 163 (257)
Q Consensus 84 v~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~ 163 (257)
|++..+||+++||+|||++.|+|++++. +.+++.+.+.++++++++|+++||+++..++.+++|+.+.+ ...+
T Consensus 87 vvrR~tGGg~V~hd~g~l~~s~i~~~~~-~~~~~~~y~~~~~~i~~~L~~lGi~~~~~~~~~~~~~~~~d------i~~~ 159 (288)
T 2p5i_A 87 VIVRNSGGLAVVLDSGILNLSLVLKEEK-GFSIDDGYELXYELICSXFQDHREQIEAREIVGSYCPGSYD------LSID 159 (288)
T ss_dssp EEEESSCCCCEEECTTEEEEEEEEECCT-TCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTC------EEET
T ss_pred EEEECCCCCEEEECCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCE------EEEC
T ss_conf 8996389964886699638999973676-67889999999999999999749960763555665777550------6778
Q ss_pred CCCCEEHHEECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCCCC------------CCHHH-HCCCCCHHHHHHHH
Q ss_conf 210100000004888998899995499135----17341056797852------------12899-18988999999999
Q gi|254780177|r 164 EEKIAAIGIRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQHGV------------TSLKE-LGYSYSMKYIDTLI 226 (257)
Q Consensus 164 ~~KIasIGi~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~~v------------TSl~~-lg~~i~~~ev~~~l 226 (257)
.+||++.|.++++++++|+.+||+++|++. |+.+.|||++++.+ |||.+ +|.+++++++.+.|
T Consensus 160 gkKi~G~aq~~~~~~~l~h~sllv~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~tsl~~~l~~~~~~~~v~~~l 239 (288)
T 2p5i_A 160 GKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVLLKA 239 (288)
T ss_dssp TEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHH
T ss_pred CEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHH
T ss_conf 86699976789888799999999857999999997200254530346542145445223466999828999999999999
Q ss_pred HHHHHHHHCHHHHCHH
Q ss_conf 9999987461110233
Q gi|254780177|r 227 RKSFESVFGPTILHEY 242 (257)
Q Consensus 227 ~~~f~~~Fg~~~~~~~ 242 (257)
.+.|.+.|+.....++
T Consensus 240 ~~~~~~~~~~~~~~~l 255 (288)
T 2p5i_A 240 LXTLQQHGASLLTESL 255 (288)
T ss_dssp HHHHHHTTCCCEECCC
T ss_pred HHHHHHHCCCCCCCCC
T ss_conf 9999984885610689
No 3
>>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:1-246)
Probab=100.00 E-value=2.8e-33 Score=236.17 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=177.3
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-----HCCCCCCEEEEECCCCEE
Q ss_conf 972389980888588999999999999997399787899980687377434788556-----105478249980566707
Q gi|254780177|r 19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-----LLSPKSLPVYTTGRGGGY 93 (257)
Q Consensus 19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-----ll~~~~ipv~~t~RGG~i 93 (257)
|+.+++ +..|..||...+++|+.+.+. ...+.+++|++.||+|++|+|++.+.++ .+...++||++..|||++
T Consensus 2 m~~~~~-i~~~~~~~~~~la~~e~l~~~-~~~~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvrR~tGGg~ 79 (246)
T 2e5a_A 2 VKSGLI-LQSISNDVYHNLAVEDWIHDH-MNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGT 79 (246)
T ss_dssp ---CEE-EEESCCCHHHHHHHHHHHHHH-CCCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCC
T ss_pred CCCCEE-EEECCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCE
T ss_conf 842289-991799988999999999960-788899589997189979989989856761999998769918998369855
Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257)
Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257)
+||+|||++.|+|++++ +.++..|.+.++++++++|+++|+++...++ ++||.+ +|||++|.+
T Consensus 80 V~hd~g~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~lGv~~~~~~~--~i~v~~-------------~Ki~g~a~~ 142 (246)
T 2e5a_A 80 VYHDMGNINLTFFTTKK--KYDRMENLKLVVRALKAVHPHLDVQATKRFD--LLLDGQ-------------FKISGTASK 142 (246)
T ss_dssp EEECTTEEEEEEEECGG--GCCHHHHHHHHHHHHHHHSTTCCEEECTTSC--EEETTT-------------EEEECEEEE
T ss_pred EEECCCCEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCCEEEEECCCC--EEECCC-------------EEEEEEEEE
T ss_conf 98439968999975467--6898999999999999975423268845786--487686-------------499888899
Q ss_pred CCCCEEEEEEEEEECCCCHHHC---CEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 0488899889999549913517---3410567978-------5212899189889999999999999987461110
Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYYT---GIVPCGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257)
Q Consensus 174 i~~~vT~HG~alNv~~dL~~F~---~IvPCGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257)
+++++++||.+||+++|++.|. .+.|||+.+. .||||.+++..++++++...|.+.|.+.|+..+.
T Consensus 143 ~~~~~~~~~~sl~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (246)
T 2e5a_A 143 IGRNAAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH 218 (246)
T ss_dssp ECSSCEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred EECCEEEEEEEEEECCCHHHHHHHCCCCHHHHHHHCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 8899899986898438889999871899156454213450764047888579999999999999999998488752
No 4
>>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} (A:)
Probab=100.00 E-value=2.2e-31 Score=223.93 Aligned_cols=220 Identities=31% Similarity=0.501 Sum_probs=194.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE
Q ss_conf 78972389980888588999999999999997399787899980687377434788556105478249980566707860
Q gi|254780177|r 17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH 96 (257)
Q Consensus 17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH 96 (257)
..|.++++. ..+..||...+++++.+.+.+.++.. +++++.||+|+||+|++.+...... .++++++-.|||+.+||
T Consensus 9 ~~~~~~~~~-~~~~~~~~~~~a~d~~ll~~~~~~~~-~~l~l~~~~p~~~lG~~q~~~~~~~-~~i~v~rR~~GGg~v~~ 85 (232)
T 1w66_A 9 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGGA-DTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH 85 (232)
T ss_dssp SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTCC-CEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE
T ss_pred HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCEEECCCCCCCCCCC-CCHHEEECCCCCEEEEE
T ss_conf 228840798-88973889999999999999857998-8599983688456567776543333-10001441788517772
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048
Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257)
Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257)
+|||++.|++++++. ..++..+...+.++++++|+++|+++...+..+++|+... ..+||++++.++++
T Consensus 86 ~~g~l~~s~~~~~~~-~~~~~~~~~~~~~~i~~~L~~~gv~~~~~~~~~~~~~~~~----------~~~Ki~G~a~~~~~ 154 (232)
T 1w66_A 86 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR 154 (232)
T ss_dssp CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET
T ss_pred CCCCEEEEEEECHHH-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECC----------HHHHHHHHHHHHHC
T ss_conf 377466655541243-2344778888899999998753542212256675100010----------15679999998731
Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHCCCHHHH
Q ss_conf 889988999954991351734105679785212899-18988999999999999998746111023312421221
Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYANINDVIS 250 (257)
Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~~~~d~~~ 250 (257)
++..||++||+++|++.|..+.||++++..+||+.+ +|.+++.+++...|+++|.+.|+..+....-+-.|++.
T Consensus 155 ~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~tsl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 229 (232)
T 1w66_A 155 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVLPVGDRVPSHAVP 229 (232)
T ss_dssp TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCCC-----------
T ss_pred CEEECCEEEECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 714033678535752217837757998993544069868999899999999999999865626657788465799
No 5
>>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244)
Probab=100.00 E-value=1.2e-31 Score=225.56 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=174.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEE
Q ss_conf 3899808885889999999999999973997878999806873774347885561-----05478249980566707860
Q gi|254780177|r 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYH 96 (257)
Q Consensus 22 ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyH 96 (257)
+++. ..+.+||...+++++.++.++.++ +++|++.+|+|++|+|++.+.+++ +...++||++..|||+++||
T Consensus 3 ~~~i-~~~~~~~~~~la~~e~ll~~~~~~--~~~l~~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvrR~tGGgav~h 79 (244)
T 3a7r_A 3 LRLL-ISDSYDPWFNLAVEECIFRQMPAT--QRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFH 79 (244)
T ss_dssp EEEE-EECCCCHHHHHHHHHHHHHHCCTT--CEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEE
T ss_pred EEEE-ECCCCCHHHHHHHHHHHHHCCCCC--CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCEEEEE
T ss_conf 8999-869999899999999999548889--9489997069989989989856665889998759829997589637896
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048
Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257)
Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257)
+|||++.|+|++..+. +.+.++++++++|+++|+++...+..+|+|... ...+||+++|.++++
T Consensus 80 d~g~l~~~~i~~~~~~------~~~~~~~~i~~~l~~lGi~a~~~~~~~~~~~~~----------~~grKi~g~a~~~~~ 143 (244)
T 3a7r_A 80 DLGNTCFTFMAGKPEY------DKTISTSIVLNALNALGVSAEASGRNDLVVKTV----------EGDRKVSGSAYRETK 143 (244)
T ss_dssp CTTEEEEEEEEETTTC------CHHHHHHHHHHHHHHTTCCEEEETTTEEEECCT----------TSCEEEEEEEEEECS
T ss_pred CCCCEEEEEEECCCCC------CHHHHHHHHHHHHHHCCCCEEECCCCCEEECCC----------CCCCEEEEEEEEEEC
T ss_conf 6998899998577400------699999999999997397315768777022356----------677379767899999
Q ss_pred CEEEEEEEEEECCCCHHHC---CEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf 8899889999549913517---3410567978-------52128991898899999999999999874611102
Q gi|254780177|r 177 WISFHGLSLNISPDLSYYT---GIVPCGISQH-------GVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH 240 (257)
Q Consensus 177 ~vT~HG~alNv~~dL~~F~---~IvPCGl~~~-------~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~ 240 (257)
++++||.+||+++|++.+. .+.||++.+. .||||.+++.+++++++...|++.|.+.|+..+..
T Consensus 144 ~~~~~~~sll~~~d~~~~~~~l~~~~~~l~~~~~~s~~~~~tsl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (244)
T 3a7r_A 144 DRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEA 217 (244)
T ss_dssp SEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CEEEEEEEEECCCCHHHHHHHCCCCCHHHHHCCCCCHHHCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 99999779860799899998639991433440557546335129995799999999999999999984545634
No 6
>>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:)
Probab=100.00 E-value=2.2e-31 Score=223.91 Aligned_cols=209 Identities=15% Similarity=0.193 Sum_probs=181.9
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC
Q ss_conf 9808885889999999999999973997878999806873774347885561-----05478249980566707860789
Q gi|254780177|r 25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG 99 (257)
Q Consensus 25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG 99 (257)
.+..+..||...+++++.+..++.+++. ++|++.||+|++|+|++.+..++ +...++||++..+||+.|||+||
T Consensus 6 ~~~~~~~~~~~~la~ee~l~~~~~~~~~-~~l~~~~~~p~v~iG~~q~~~~ev~~~~~~~~~i~vvrR~tGGg~v~hd~G 84 (262)
T 2c8m_A 6 LLLETPGNTRMSLAYDEAIYRSFQYGDK-PILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG 84 (262)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHCCTTSC-CEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCC-CEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC
T ss_conf 9964999988989999999972547899-899998179979989789803554989998679838998369964998899
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf 24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r 100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179 (257)
Q Consensus 100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT 179 (257)
||+.|+|++.+ +.++.++.+.++++++++|+++|+++...+..+++|+... ..+.....+||++.|.+++++++
T Consensus 85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~~Gi~~~~~~~~~~~~~~~~----~~di~~~gkKi~G~a~~~~~~~~ 158 (262)
T 2c8m_A 85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNK----KTDIMAGEKKIMGAAGAMRKGAK 158 (262)
T ss_dssp EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECCBCCTTSSSSB----TTSEEETTEEEEEEEEEEETTEE
T ss_pred CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCC----CCCCCCCCEEEEEEEEEEECCEE
T ss_conf 81899997058--9999999999999999999973951588585880784567----77655687068753025438889
Q ss_pred EEEEEEEECCCCHH---HCCEEECCCCCCCCCCHHHH------CCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf 98899995499135---17341056797852128991------898899999999999999874611102
Q gi|254780177|r 180 FHGLSLNISPDLSY---YTGIVPCGISQHGVTSLKEL------GYSYSMKYIDTLIRKSFESVFGPTILH 240 (257)
Q Consensus 180 ~HG~alNv~~dL~~---F~~IvPCGl~~~~vTSl~~l------g~~i~~~ev~~~l~~~f~~~Fg~~~~~ 240 (257)
+|+.+||+++|++. +-.+.||++.++.++|+.+. ..+++++++.+.|++.|.+.||.....
T Consensus 159 l~~~tll~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 228 (262)
T 2c8m_A 159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFRE 228 (262)
T ss_dssp EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTSCCCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9986611479999999875889644422234434653336877189899999999999999985897601
No 7
>>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A (A:)
Probab=99.97 E-value=2.8e-29 Score=210.20 Aligned_cols=221 Identities=33% Similarity=0.531 Sum_probs=202.1
Q ss_pred CCCCCCCCHHCCCCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----
Q ss_conf 656554331003557897238998-08885889999999999999973997878999806873774347885561-----
Q gi|254780177|r 3 LLSRNALNTSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL----- 76 (257)
Q Consensus 3 ~~~~~~~~~~~~p~~~~~~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl----- 76 (257)
+.||++...++..|....+..|.+ ..+..+|...+++++.+.+++.++...++++++||+|++|+|++.+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~d~~ll~~~~~~~~~~~l~~~~~~~~~~~G~~q~~~~~~~~~~ 81 (237)
T 2qhs_A 2 GSSHHHHHHSSGLVPRGSHMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPES 81 (237)
T ss_dssp -------------------CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCCCCCHHH
T ss_conf 86554433346777788897189967898588999999999999996699998699980698176367788332122144
Q ss_pred -CCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCC
Q ss_conf -0547824998056670786078924777651210012038999999999999998862885324588721674166766
Q gi|254780177|r 77 -LSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKT 155 (257)
Q Consensus 77 -l~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~ 155 (257)
+...+++++.-.|||+..||.|||+..|++++.... +..+...+..+++++|+++|+.+...+...+||+++
T Consensus 82 ~~~~~~~q~~~R~~gG~~~~~~~G~l~~s~i~~~~~~---~~~~~~~~~~~v~~~l~~~g~~~~~~k~~nDi~~~g---- 154 (237)
T 2qhs_A 82 WYRENGFELYWVERGGDVTYHGPGQLVGYPIFPVGRE---VRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE---- 154 (237)
T ss_dssp HHHHTTCEEEECCSSSSEEEECTTEEEEEEECCCTTC---HHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETT----
T ss_pred HHHCCCCEEEEECCCCCEEEECCCCEEEEEEHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH----
T ss_conf 5404763089923787288975774798872344430---789999999998888765313332367764456540----
Q ss_pred CCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 655565642101000000048889988999954991351734105679785212899-1898899999999999999874
Q gi|254780177|r 156 RDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVF 234 (257)
Q Consensus 156 ~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~F 234 (257)
+|||.++++++++.+.|++++|++.|++.|..+.||++.+..+|||.+ ++..++.+++...|.++|.+.|
T Consensus 155 ---------kKi~G~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~tsl~~~~~~~~~~~~l~~~l~~~~~~~~ 225 (237)
T 2qhs_A 155 ---------DKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVF 225 (237)
T ss_dssp ---------EEEEEEEEEEETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHEEEECCEEEEECCCCCCCCEEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---------04989998651205724479884474015882782788998173648976899999999999999999985
Q ss_pred CHHHH
Q ss_conf 61110
Q gi|254780177|r 235 GPTIL 239 (257)
Q Consensus 235 g~~~~ 239 (257)
+....
T Consensus 226 ~~~~~ 230 (237)
T 2qhs_A 226 GLRPV 230 (237)
T ss_dssp TCEEC
T ss_pred CCCEE
T ss_conf 99322
No 8
>>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:1-187)
Probab=99.83 E-value=2.2e-20 Score=152.44 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=152.6
Q ss_pred HHCCCCCCEEEEEEC-CCEEEECCCCC-HHHHCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 973997878999806-87377434788-5561054782499805667078607892477765121001203899999999
Q gi|254780177|r 47 ISLGNAEELVWLLEH-PPLYTSGTSAI-SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALE 124 (257)
Q Consensus 47 v~~~~~~d~l~llEH-~pVyT~G~~~~-~~dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE 124 (257)
++.++.++++++++| +++++.++... ++..+...+.++...+|||..+||+||||..|+++++.........+...+.
T Consensus 4 l~~~~~~~~i~~~~~~~st~~~~~~~~~~~~~~~~a~~q~~grgrgG~~w~~~~g~l~~s~~~~~~~~~~~~~~l~~~~~ 83 (187)
T 2dxu_A 4 LKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGA 83 (187)
T ss_dssp CCCSSTTSEEEEESSBSCHHHHHHHSCCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHH
T ss_pred CCHHHHCCEEEEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 55246458599938678889999850999995999897678888899847898530224111010143200010025677
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCC
Q ss_conf 99999988628853245887216741667666555656421010000000488899889999549913517341056797
Q gi|254780177|r 125 EVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQ 204 (257)
Q Consensus 125 ~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~ 204 (257)
.+++++|+.+|+++..+. ..+|||++ +|||.|++.++++.++||+.||+++|+ +
T Consensus 84 ~~v~~~l~~~g~~~~~kw-pNDI~v~g-------------~Ki~Gil~~~~~~~~v~G~gin~~~~~------------~ 137 (187)
T 2dxu_A 84 VGVVETLKEFSIDGRIKW-PNDVLVNY-------------KKIAGVLVEGKGDKIVLGIGLNVNNKV------------P 137 (187)
T ss_dssp HHHHHHHHHTTCCCEEET-TTEEEETT-------------EEEEEEEEEECSSCEEEEEEECSSSCC------------C
T ss_pred HHHHHHHCCCCEEEEEEE-CCCEEECC-------------CCCEEEEEEEEEEEEEEEECEECCCCC------------C
T ss_conf 778865312221368875-56217715-------------421146653355579998430144545------------3
Q ss_pred CCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHCCCHH
Q ss_conf 85212899-189889999999999999987461110233124212
Q gi|254780177|r 205 HGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYANINDV 248 (257)
Q Consensus 205 ~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~~~~d~ 248 (257)
..+|||.+ ++.+++.+++...+.++|.+.|+.-..+....++++
T Consensus 138 ~~~tsL~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~ 182 (187)
T 2dxu_A 138 NGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNPMDILNLV 182 (187)
T ss_dssp TTBCCHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 321025566532001346788988888899999985126666777
No 9
>>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251)
Probab=98.81 E-value=6e-08 Score=71.80 Aligned_cols=157 Identities=15% Similarity=0.094 Sum_probs=115.1
Q ss_pred ECCCEEEECCCCCHH-----------HHCCCCCCEEEEECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 068737743478855-----------610547824998056670786078924777651210012038999999999999
Q gi|254780177|r 60 EHPPLYTSGTSAISD-----------DLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVII 128 (257)
Q Consensus 60 EH~pVyT~G~~~~~~-----------dll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii 128 (257)
.|-.-|-+..+.... ++|+.+.+-+.+.+ |+|-.-.|++........ -..+-+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------GnLnySli~p~~~~~~~~---y~~l~~~I~ 76 (209)
T 1vqz_A 10 HHHXKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWIN----------NNLNYTIISKEDENKAFD---FKSFSTPVI 76 (209)
T ss_dssp --CEEEEECCCCCHHHHHHHHHHHHHHCTTCSEEEEEECC----------TEEEEEEEEECCTTCCCS---HHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEC----------CCEEEEEEECCCCCCHHH---HHHHHHHHH
T ss_conf 5427999779999899999999999537889978999826----------967999997365442200---999999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCE---EECCCC--
Q ss_conf 998862885324588721674166766655565642101000000048889988999954991351734---105679--
Q gi|254780177|r 129 RTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGI---VPCGIS-- 203 (257)
Q Consensus 129 ~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~I---vPCGl~-- 203 (257)
++|+.+||++.... .-.+++++ +||+-.+.++++++.+|..+|.+++|++..... -|.++.
T Consensus 77 ~aL~~lGI~a~~~g-~nDI~i~g-------------kKIsGsAq~~~~~~~l~HgTIlvd~D~~~l~~~L~~~~ek~~~k 142 (209)
T 1vqz_A 77 NTLAQLGVKAEFTG-RNDLEIDG-------------KKFCGNAQAYINGRIXHHGCLLFDVDLSVLANALKVSKDKFESK 142 (209)
T ss_dssp HHHHHTTCCEEEET-TTEEEETT-------------EEEEEEEEEEETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEEC
T ss_pred HHHHHHCCCEEECC-CCCCEECC-------------CEEEEEEEEEECCEEEEEEEEEECCCHHHHHHHHCCCCCCHHHC
T ss_conf 99997345538714-78740068-------------18865334340847999868860699999998708994020221
Q ss_pred -----CCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHH
Q ss_conf -----785212899-1898899999999999999874611102331
Q gi|254780177|r 204 -----QHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYA 243 (257)
Q Consensus 204 -----~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~ 243 (257)
...||||.+ +|.+++++++...|++.|.+.|+.....+.+
T Consensus 143 ~~~s~~~~vtsL~e~lg~~is~e~l~~aL~e~~~~~~~~~~~~~lt 188 (209)
T 1vqz_A 143 GVKSVRARVTNIINELPKKITVEKFRDLLLEYXKKEYPEXTEYVFS 188 (209)
T ss_dssp SCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTCEECCCC
T ss_pred CCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 5553465542189774899999999999999999863877522379
No 10
>>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} (A:1-191)
Probab=98.76 E-value=1.6e-07 Score=69.05 Aligned_cols=131 Identities=19% Similarity=0.087 Sum_probs=103.6
Q ss_pred ECCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 05667078607892477765121001203899999999999999886288532458872167416676665556564210
Q gi|254780177|r 87 TGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166 (257)
Q Consensus 87 t~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~K 166 (257)
-+|+|...++.+|++.+.+++...... +..+-....-++.++|.++.....+.+-.-.||++.. ...+|
T Consensus 38 rGR~gr~W~sp~g~l~~S~~~~~~~~~--~~~l~~~~~~av~~al~~~~~~~~~iKWPNDi~~~~~---------~~gkK 106 (191)
T 2ej9_A 38 KGRWGRVWYSDEGGLYFSMVLDSKLYN--PKVINLLVPICIIEVLKNYVDKELGLKFPNDIMVKVN---------DNYKK 106 (191)
T ss_dssp BCGGGCBCCCCTTSEEEEEEEETTSSC--HHHHHHHHHHHHHHHHTTTCCSCEEEETTTEEEEEET---------TEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECC---------CCCCE
T ss_conf 798998322897675301212333211--0001235678999987640233210463140898405---------77866
Q ss_pred CEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 100000004888998899995499135173410567978521289-9189889999999999999987461
Q gi|254780177|r 167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGP 236 (257)
Q Consensus 167 IasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257)
||.|.+........+|+.||++++. +...+..+|||. +++..++.+++-..+.++|...+..
T Consensus 107 i~GiL~e~~~~~~viGiGiNv~~~~--------~~~~~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~ 169 (191)
T 2ej9_A 107 LGGILTELTDDYMIIGIGINVNNQI--------RNEIREIAISLKEITGKELDKVEILSNFLKTFESYLEK 169 (191)
T ss_dssp EEEEEEEECSSEEEEEEEECSSSCC--------CGGGGGTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCEEEEEEEECCCCC--------CHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8787764126613788876214578--------50103665527776085223999999999999999988
No 11
>>3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} (A:1-191)
Probab=96.58 E-value=0.065 Score=32.61 Aligned_cols=129 Identities=10% Similarity=-0.060 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC---CCCCCC-CCCCEEEECCCCCCCCCCCCCC
Q ss_conf 566707860789247776512100120389999999999999988628---853245-8872167416676665556564
Q gi|254780177|r 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILG---IVGERR-EDRVGIWVVRLNKTRDNQLLLI 163 (257)
Q Consensus 88 ~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~g---I~~~~~-~~~~GVWV~~~~~~~~~~~~~~ 163 (257)
+|+|..=+.-+|.|-.-.++........+..+.-..--++.++|++++ ++...+ |. -||++
T Consensus 36 Gr~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~l~~~~Ai~~al~~~~~~~~~v~iKWPN--DI~v~------------- 100 (191)
T 3bfm_A 36 DAGLVVYELGTDVLRAALVLAPEVPLAKAXAXLPVCGVGFQNALGALAPPEVAVHLDWNG--ALRIN------------- 100 (191)
T ss_dssp CTTEEEEEECSSEEEEEEEECCSSCHHHHTTHHHHHHHHHHHHHHHHSCTTCCEEECTTS--EEEET-------------
T ss_pred CCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC--CEEEC-------------
T ss_conf 987489977999799999978786899996899999999999999867967237986698--40888-------------
Q ss_pred CCCCEEHHEECC-------CCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 210100000004-------8889988999954991351734105679785212899-18988999999999999998746
Q gi|254780177|r 164 EEKIAAIGIRIR-------KWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 164 ~~KIasIGi~i~-------~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg 235 (257)
++|||-|=+... .-.-.=|+.||++... ........|||.+ .+..++.+++-..+..+|.+.+.
T Consensus 101 ~kKi~GIL~E~~~~~~~~~~~~~viGiGiNv~~~~--------~~~~~~~atsL~~~~~~~~~~~~l~~~~~~~l~~~~~ 172 (191)
T 3bfm_A 101 GARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEG--------DGGETPDETALYAEGCADVAAPRLLESWARHCLHWIN 172 (191)
T ss_dssp TEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCC--------SSCCCCCSCCGGGTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCC--------CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 80400478973036766664269998875157787--------7543342246666516799999999999999998645
Q ss_pred HHHH
Q ss_conf 1110
Q gi|254780177|r 236 PTIL 239 (257)
Q Consensus 236 ~~~~ 239 (257)
.-..
T Consensus 173 ~~~~ 176 (191)
T 3bfm_A 173 RWDE 176 (191)
T ss_dssp HHHT
T ss_pred HHHH
T ss_conf 5540
No 12
>>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:1-221)
Probab=96.30 E-value=0.087 Score=31.82 Aligned_cols=123 Identities=14% Similarity=0.045 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCEEEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHHC----CCCCCCC-CCCCEEEECCCCCCCCCCCC
Q ss_conf 667078607892477765121--0012038999999999999998862----8853245-88721674166766655565
Q gi|254780177|r 89 RGGGYTYHGPGQRIIYIMLNL--AKRRKDLRCFVAALEEVIIRTLKIL----GIVGERR-EDRVGIWVVRLNKTRDNQLL 161 (257)
Q Consensus 89 RGG~iTyHGPGQlV~Ypii~L--~~~~~~v~~yv~~lE~~ii~~l~~~----gI~~~~~-~~~~GVWV~~~~~~~~~~~~ 161 (257)
|.|..=+.-+|.+..-.++.. ......+...--..--++.++|+++ +++...+ |. .||+++
T Consensus 71 r~gr~W~Sp~g~~~~s~~~~~~~~~~~~~~~~ls~~~~lav~~al~~~~~~~~~~~~iKWPN--DI~v~~---------- 138 (221)
T 2cgh_A 71 RHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPN--DVLARG---------- 138 (221)
T ss_dssp --------CTTSEEEEEEEEECTTSCGGGTTHHHHHHHHHHHHHHGGGSSSCGGGEEEETTT--EEEETT----------
T ss_pred CCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC--CEEEEC----------
T ss_conf 08990178999978985310246675566422117889999988642013521048986325--416630----------
Q ss_pred CCCCCCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 642101000000048889988999954991351734105679785212899-18988999999999999998746
Q gi|254780177|r 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 162 ~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg 235 (257)
+|||-|=+-.......=|+-||++..-... ...+|||.+ .+..++.+++-..+..+|.+.+.
T Consensus 139 ---kKi~GIL~E~~~~~~viGiGiNv~~~~~~~---------~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~ 201 (221)
T 2cgh_A 139 ---GKLAGILAEVAQPFVVLGVGLNVTQAPEEV---------DPDATSLLDLGVAAPDRNRIASRLLRELEARII 201 (221)
T ss_dssp ---EEEEEEEEEEETTEEEEEEEEESCCC-----------------CCTGGGTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEEEEECCCEEEEEECCCCCCCCHHH---------HCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf ---130577443011148998234455585232---------011000012444444425789998899999999
No 13
>>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* (A:1-185)
Probab=95.71 E-value=0.17 Score=29.83 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=84.4
Q ss_pred CCCEEEEECC-CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 6670786078-924777651210012038999999999999998862-8853245-887216741667666555656421
Q gi|254780177|r 89 RGGGYTYHGP-GQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL-GIVGERR-EDRVGIWVVRLNKTRDNQLLLIEE 165 (257)
Q Consensus 89 RGG~iTyHGP-GQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~-gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~ 165 (257)
|+| -+|+.| |.|-.-.++....... ....--..--++.++|.++ +++...+ |. -|++++ +
T Consensus 40 r~g-r~W~Sp~g~l~~S~~~~~~~~~~-~~~l~~~~~~ai~~~l~~~~~~~v~iKWPN--Di~~~~-------------k 102 (185)
T 2eay_A 40 RLG-RKWLSQEGGLYFSFLLNPKEFEN-LLQLPLVLGLSVSEALEEITEIPFSLKWPN--DVYFQE-------------K 102 (185)
T ss_dssp ----------CCEEEEEEEECTTTCCC-TTHHHHHHHHHHHHHHHHHHCCCCEEETTT--EEEETT-------------E
T ss_pred CCC-CEEECCCCCCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCEEECH--HHHCCC-------------C
T ss_conf 899-86138877751776430013332-014566777766544332125332101040--232234-------------4
Q ss_pred CCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 01000000048889988999954991351734105679785212899-189889999999999999987461
Q gi|254780177|r 166 KIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGP 236 (257)
Q Consensus 166 KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257)
|||-|=+-.....-.=|+.||++.+-. +.++ ....|||.+ .+..++.+++-..+.++|.+.+..
T Consensus 103 Ki~GIL~E~~~~~~viGiGiNl~~~~~------~~~~-~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~ 167 (185)
T 2eay_A 103 KVSGVLCELSKDKLIVGIGINVNQREI------PEEI-KDRATTLYEITGKDWDRKEVLLKVLKRISENLKK 167 (185)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSCCCC------CTTT-TTTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEEEEEECCEEECCCCC------CCCC-CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 420441000255799711103215778------7311-1232202220222354356666667778776554
No 14
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:65-271)
Probab=93.97 E-value=0.5 Score=26.86 Aligned_cols=127 Identities=11% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCCEEEEECCCCEE-EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 566707860789247-77651210012038999999999999998862-8853245-88721674166766655565642
Q gi|254780177|r 88 GRGGGYTYHGPGQRI-IYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL-GIVGERR-EDRVGIWVVRLNKTRDNQLLLIE 164 (257)
Q Consensus 88 ~RGG~iTyHGPGQlV-~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~-gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~ 164 (257)
+|.|..-+.-+|-+. ...++...........+.-..--++.++|.++ +++...+ |. .|++++
T Consensus 53 Gr~gr~W~Sp~g~~l~~sl~~~~~~~~~~~~~ls~~~~~av~~aL~~~~~~~~~iKWPN--DI~~~~------------- 117 (207)
T 1bia_A 53 GRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPN--DLYLQD------------- 117 (207)
T ss_dssp --------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTT--EEEETT-------------
T ss_pred CCCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC--CHHCCC-------------
T ss_conf 79998308979997899976146778667533446678999999875315436788444--111034-------------
Q ss_pred CCCEEHHEECCC-----CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 101000000048-----889988999954991351734105679785212899-189889999999999999987461
Q gi|254780177|r 165 EKIAAIGIRIRK-----WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGP 236 (257)
Q Consensus 165 ~KIasIGi~i~~-----~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257)
+|||-|=+-... ..-.=|+-||++++-.+ -+ -....|||.+ .+..++.+++-..+.++|...+..
T Consensus 118 ~Ki~GIL~E~~~~~~~~~~~viGiGiNv~~~~~~------~~-~~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~~ 188 (207)
T 1bia_A 118 RKLAGILVELTGKTGDAAQIVIGAGINMAMRRVE------ES-VVNQGWITLQEAGINLDRNTLAAMLIRELRAALEL 188 (207)
T ss_dssp EEEEEEEEEEEC----CEEEEEEEEEECCC------------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCC------CH-HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 4555236885311466320356530233467885------00-00021023344224444366677666778999999
No 15
>>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:50-91)
Probab=77.66 E-value=2.7 Score=22.15 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEEC
Q ss_conf 873774347885561-----054782499805667078607
Q gi|254780177|r 62 PPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHG 97 (257)
Q Consensus 62 ~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHG 97 (257)
.|..++|++.+.++. ....+||+++-.-||+..||.
T Consensus 1 ep~v~iG~~Q~~~~evn~~~~~~~~I~vvRR~tGGGaV~hD 41 (42)
T 1vqz_A 1 KPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHD 41 (42)
T ss_dssp SSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEEC
T ss_pred CCEEEECCCCCHHHHHCHHHHHHCCCEEEEEECCCCEEEEC
T ss_conf 99899998888677768899987698199996699618988
No 16
>>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} (A:)
Probab=52.43 E-value=17 Score=17.01 Aligned_cols=86 Identities=24% Similarity=0.237 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEE-EEEEEEECCCCHHHCCEEEC
Q ss_conf 99999999988628853245887216741667666555656421010000000488899-88999954991351734105
Q gi|254780177|r 122 ALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF-HGLSLNISPDLSYYTGIVPC 200 (257)
Q Consensus 122 ~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~-HG~alNv~~dL~~F~~IvPC 200 (257)
.|-..+-..|.++|++..|.-+ -+|+++ +| -|+-|+...-||. =-+.|||...-. |
T Consensus 90 Llv~i~kEvl~~~gi~~~R~GD--DLy~~~-------------kK-LSVSIAt~s~vS~kIH~GiNV~~~g~------P- 146 (190)
T 2ddz_A 90 LLIARLVELLWNYGIEASRRGD--DIYVNG-------------RK-LSISIATVSPVSIKIHIGLNVKTVGV------P- 146 (190)
T ss_dssp HHHHHHHHHHHTTTCCEEEETT--EEEETT-------------EE-CEEEEEEECSSCEEEEEEEESCCSSC------C-
T ss_pred HHHHHHHHHHHHCCCCEEECCC--EEEECC-------------CE-EEEEEEECCCCCEEEEEEEEEEECCC------C-
T ss_conf 9999999999974984487078--068849-------------77-89999962787158998788760564------7-
Q ss_pred CCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6797852128991898899999999999999874
Q gi|254780177|r 201 GISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 (257)
Q Consensus 201 Gl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F 234 (257)
++..+.+|.++|.+ ..++.+.+...+.+.|
T Consensus 147 --~~V~~igL~dlgid--~~e~~~~i~~~y~~E~ 176 (190)
T 2ddz_A 147 --PGVDAIGLEELGID--PTEFMERSAKALVEEI 176 (190)
T ss_dssp --SSSCBCCHHHHTCC--HHHHHHHHHHHHHHHH
T ss_pred --CCCCEECHHHCCCC--HHHHHHHHHHHHHHHH
T ss_conf --87514123322778--9999999999999998
No 17
>>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A (A:121-199)
Probab=51.41 E-value=13 Score=17.67 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCC--CCCCCCCEEEEC
Q ss_conf 9999999988628853--245887216741
Q gi|254780177|r 123 LEEVIIRTLKILGIVG--ERREDRVGIWVV 150 (257)
Q Consensus 123 lE~~ii~~l~~~gI~~--~~~~~~~GVWV~ 150 (257)
|-+.+-+.|.++||+. +.++.+.||||-
T Consensus 14 LLelV~~WL~~lGi~~tihLDD~RHGVYVL 43 (79)
T 2vs7_A 14 LLEIVSRWLNNLGVRNTIHLDDHRHGVYVL 43 (79)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTTTEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCEEEE
T ss_conf 999999999986975899970377866999
No 18
>>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} (D:1-99)
Probab=48.24 E-value=12 Score=17.81 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.4
Q ss_pred ECCCCEEEEECCCCEEEEEEECCCC
Q ss_conf 0566707860789247776512100
Q gi|254780177|r 87 TGRGGGYTYHGPGQRIIYIMLNLAK 111 (257)
Q Consensus 87 t~RGG~iTyHGPGQlV~Ypii~L~~ 111 (257)
-.+||++|+|-.|++.-|.++=+.+
T Consensus 60 ~~daGnYTCh~~g~~Lnht~lLih~ 84 (99)
T 3d85_D 60 FGDAGQYTCHKGGEVLSHSLLLLHK 84 (99)
T ss_dssp GGGCEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEECCCCCCCEEEEEEEC
T ss_conf 5478789993057654258875201
No 19
>>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth factor, FGF-2 regulation; 2.30A {Homo sapiens} (A:)
Probab=41.26 E-value=20 Score=16.44 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=44.5
Q ss_pred EEEECCCCEEEEECCCCEEEEEEECCCCC----CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 99805667078607892477765121001----20389999999999999988628853245887216741667666555
Q gi|254780177|r 84 VYTTGRGGGYTYHGPGQRIIYIMLNLAKR----RKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQ 159 (257)
Q Consensus 84 v~~t~RGG~iTyHGPGQlV~Ypii~L~~~----~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~ 159 (257)
--..||=|+|| +++++. ..|...|...|++++.. -+.+++.|||+.=
T Consensus 26 ~g~~Dry~GV~------------V~~~~~~~~~~~d~~~F~~~L~~sl~~---------Wr~~gk~~iWlki-------- 76 (113)
T 3fxt_A 26 QGELDRFGGIS------------VRLARLDALDRLDAAAFQKGLQAAVQQ---------WRSEGRTAVWLHI-------- 76 (113)
T ss_dssp CCEECTTSCEE------------EEHHHHTTTSCBCHHHHHHHHHHHHHH---------HHHTTCCEEEEEE--------
T ss_pred CCCCCCCCCEE------------EECCCCCCCCCCCHHHHHHHHHHHHHH---------HHHCCCEEEEEEE--------
T ss_conf 35503659999------------826767764436999999999999999---------9986984899980--------
Q ss_pred CCCCCCCCEEHHEECCCCEEEEEEE
Q ss_conf 6564210100000004888998899
Q gi|254780177|r 160 LLLIEEKIAAIGIRIRKWISFHGLS 184 (257)
Q Consensus 160 ~~~~~~KIasIGi~i~~~vT~HG~a 184 (257)
+-..---|-+.+..|-.||=.-
T Consensus 77 ---p~~~s~lIp~a~~~GF~fHHa~ 98 (113)
T 3fxt_A 77 ---PILQSRFIAPAASLGFCFHHAE 98 (113)
T ss_dssp ---EGGGGGGHHHHHHTTCEEEEEE
T ss_pred ---CHHHHHHHHHHHHCCCCEECCC
T ss_conf ---7899766899997697146489
No 20
>>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:1-182)
Probab=28.05 E-value=40 Score=14.53 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 8999999999999998862885324588721
Q gi|254780177|r 116 LRCFVAALEEVIIRTLKILGIVGERREDRVG 146 (257)
Q Consensus 116 v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~G 146 (257)
-..-+...-+.+.++|++|||++....=.+|
T Consensus 87 ~~~el~~~~~~L~~tL~~FgI~a~v~~i~~G 117 (182)
T 2iut_A 87 SPESLEAMSRLLEIKLKEFGVEVSVDSVHPG 117 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 9999999999999999977970899854689
No 21
>>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} (A:)
Probab=25.04 E-value=45 Score=14.18 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=66.1
Q ss_pred ECCCCEEEE-ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCCCCCC-----------------CCE
Q ss_conf 056670786-07892477765121001203899999999999999886288--5324588-----------------721
Q gi|254780177|r 87 TGRGGGYTY-HGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGI--VGERRED-----------------RVG 146 (257)
Q Consensus 87 t~RGG~iTy-HGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI--~~~~~~~-----------------~~G 146 (257)
..||-+||+ |||+++-.++-+..-... .... +.+.+.+.+..+.+ -+....+ .-+
T Consensus 45 ~~~Ga~V~li~g~~~~~~p~~~~~~~v~-t~~~----~~~~~~~~~~~~D~~i~aAAVsDf~~~~~~~~KiK~~~~~~~~ 119 (226)
T 1u7z_A 45 ARRGANVTLVSGPVSLPTPPFVKRVDVM-TALE----MEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDE 119 (226)
T ss_dssp HHTTCEEEEEECSCCCCCCTTEEEEECC-SHHH----HHHHHHHHGGGCSEEEECCBCCSEEESSCCSSCC-------CE
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCHHC-CCHH----HHHHHHHHHCCCCEEEEECCCHHHHEEEECCCCCCCCCCCCCC
T ss_conf 8789719988414545654432210000-0068----9999985530573688512214320000001112322245766
Q ss_pred EEECCCCCCCCCCCCCCCCCCE-EHHEECCCCEEEEEEEEEECCCCH---------HHCCEEECCCCCC--CCCC-----
Q ss_conf 6741667666555656421010-000000488899889999549913---------5173410567978--5212-----
Q gi|254780177|r 147 IWVVRLNKTRDNQLLLIEEKIA-AIGIRIRKWISFHGLSLNISPDLS---------YYTGIVPCGISQH--GVTS----- 209 (257)
Q Consensus 147 VWV~~~~~~~~~~~~~~~~KIa-sIGi~i~~~vT~HG~alNv~~dL~---------~F~~IvPCGl~~~--~vTS----- 209 (257)
.|++ . ..--||. .|+-.-....-.=||++--+..++ ..+.|+.=-+... .+-|
T Consensus 120 l~l~---------L-~~~Pkil~~i~~~~~p~~~lVgFklEt~~~i~~A~~kl~~k~~D~ivaN~i~~~~~~fg~~~n~v 189 (226)
T 1u7z_A 120 LTIK---------M-VKNPDIVAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNAL 189 (226)
T ss_dssp EEEE---------E-EECCCHHHHHHHCSSSCCEEEEEEEESSSHHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEE
T ss_pred CCEE---------E-ECCHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 6056---------3-16877999988641478547888742032367889999864998899701577898658775189
Q ss_pred --HHHHC----CCCCHHHHHHHHHHHHHHHHC
Q ss_conf --89918----988999999999999998746
Q gi|254780177|r 210 --LKELG----YSYSMKYIDTLIRKSFESVFG 235 (257)
Q Consensus 210 --l~~lg----~~i~~~ev~~~l~~~f~~~Fg 235 (257)
+..-| ...+-.++...+.+...+.+.
T Consensus 190 ~ii~~~g~~~~~~~sK~~ia~~I~~~i~~~l~ 221 (226)
T 1u7z_A 190 HLFWQDGDKVLPLERKELLGQLLLDEIVTRYD 221 (226)
T ss_dssp EEEETTEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99979993885789999999999999999999
No 22
>>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} (A:131-210)
Probab=23.76 E-value=31 Score=15.20 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=36.7
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCEEHHEEC--CCCEEEEEEEEEE
Q ss_conf 999999886288532458872167416676-66555656421010000000--4888998899995
Q gi|254780177|r 125 EVIIRTLKILGIVGERREDRVGIWVVRLNK-TRDNQLLLIEEKIAAIGIRI--RKWISFHGLSLNI 187 (257)
Q Consensus 125 ~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~-~~~~~~~~~~~KIasIGi~i--~~~vT~HG~alNv 187 (257)
..+.+.|.++|.++..+.+.-|-+|.+++. .-|-.. ..-...+.+.-++ .-+|--||+.+|.
T Consensus 16 ~~v~~~l~~lG~~~~lR~~~~gp~vTDnGN~IiD~~~-~~i~d~~~l~~~L~~i~GVVe~GlF~n~ 80 (80)
T 1uj6_A 16 RATLKAIADLGGEPELRXDGDEFYFTDGGHLIADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGX 80 (80)
T ss_dssp HHHHHHHHTTTCCEEECEETTEECCCTTSCEEEEECC-CSCSCHHHHHHHHHTSTTEEEESEECSC
T ss_pred HHHHHHHHHHCCCEEEECCCCCEEEECCCCEEEEECC-CCCCCHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9999999972896489417980289479988999128-9989999999998679999802800587
No 23
>>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:1-135)
Probab=23.14 E-value=44 Score=14.27 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 999999999999998862885324588721
Q gi|254780177|r 117 RCFVAALEEVIIRTLKILGIVGERREDRVG 146 (257)
Q Consensus 117 ~~yv~~lE~~ii~~l~~~gI~~~~~~~~~G 146 (257)
...+....+.+.++|++|||++....-.+|
T Consensus 41 ~~el~~~~~~l~~tl~~F~I~~~v~~~~~G 70 (135)
T 2ius_A 41 TFALEQMARLVEARLADFRIKADVVNYSPG 70 (135)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 999999999999999977960899821569
Done!