HHsearch results for GI: 254780177 and protein with PDBid: 2c8m_A

>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=99.92  E-value=5.9e-23  Score=168.21  Aligned_cols=209  Identities=14%  Similarity=0.232  Sum_probs=169.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEEC
Q ss_conf             899808885889999999999999973997878999806873774347885561-----054782499805667078607
Q gi|254780177|r   23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHG   97 (257)
Q Consensus        23 e~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHG   97 (257)
                      ++.+...+.++...+++.+.+.+....+. ..++.+.+|+|.+|+|++.+..+.     +...++++++-.+||+++||+
T Consensus         4 ~~~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGGaV~hd   82 (262)
T 2c8m_A            4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHD   82 (262)
T ss_dssp             EEECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf             09997799998999999999997153799-97899982799699888898356529899987699589970798379977


Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCC
Q ss_conf             89247776512100120389999999999999988628853245887216741667666555656421010000000488
Q gi|254780177|r   98 PGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW  177 (257)
Q Consensus        98 PGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~  177 (257)
                      |||++.|+|++...  .++..+.+.+.++++++|+.+||++...+ ..++|+....   ..+.....+||+..+.+.+++
T Consensus        83 ~g~l~~s~i~~~~~--~~~~~~y~~i~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~dl~~~~~Ki~G~a~~~~~~  156 (262)
T 2c8m_A           83 LGDLNFSVVRSSDD--MDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKG  156 (262)
T ss_dssp             TTEEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETT
T ss_pred             CCCEEEEEEEECCC--CCHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCEEECCC---CCCCCCCCCCEEEEEEEEECC
T ss_conf             99869999870689--99999999999999999998495158857-6882673365---664123566125356786588


Q ss_pred             EEEEEEEEEECCCCHHH---CCEEECCCCCCC-------CCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             89988999954991351---734105679785-------212899189889999999999999987461110
Q gi|254780177|r  178 ISFHGLSLNISPDLSYY---TGIVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL  239 (257)
Q Consensus       178 vT~HG~alNv~~dL~~F---~~IvPCGl~~~~-------vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~  239 (257)
                      ..+|+.+|.++.|++.+   -.+.+|++.+..       ||||.++ .+++++++.+.|.+.|.+.|+..+.
T Consensus       157 ~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~~~~~~~~  227 (262)
T 2c8m_A          157 AKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFR  227 (262)
T ss_dssp             EEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             7999999886389999998648993100220355367513058772-8989999999999999998689761