HHsearch results for GI: 254780177 and protein with PDBid: 2c8m_A
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=99.92 E-value=5.9e-23 Score=168.21 Aligned_cols=209 Identities=14% Similarity=0.232 Sum_probs=169.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEEC
Q ss_conf 899808885889999999999999973997878999806873774347885561-----054782499805667078607
Q gi|254780177|r 23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHG 97 (257)
Q Consensus 23 e~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHG 97 (257)
++.+...+.++...+++.+.+.+....+. ..++.+.+|+|.+|+|++.+..+. +...++++++-.+||+++||+
T Consensus 4 ~~~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGGaV~hd 82 (262)
T 2c8m_A 4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHD 82 (262)
T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf 09997799998999999999997153799-97899982799699888898356529899987699589970798379977
Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCC
Q ss_conf 89247776512100120389999999999999988628853245887216741667666555656421010000000488
Q gi|254780177|r 98 PGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW 177 (257)
Q Consensus 98 PGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~ 177 (257)
|||++.|+|++... .++..+.+.+.++++++|+.+||++...+ ..++|+.... ..+.....+||+..+.+.+++
T Consensus 83 ~g~l~~s~i~~~~~--~~~~~~y~~i~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~dl~~~~~Ki~G~a~~~~~~ 156 (262)
T 2c8m_A 83 LGDLNFSVVRSSDD--MDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKG 156 (262)
T ss_dssp TTEEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETT
T ss_pred CCCEEEEEEEECCC--CCHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCEEECCC---CCCCCCCCCCEEEEEEEEECC
T ss_conf 99869999870689--99999999999999999998495158857-6882673365---664123566125356786588
Q ss_pred EEEEEEEEEECCCCHHH---CCEEECCCCCCC-------CCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 89988999954991351---734105679785-------212899189889999999999999987461110
Q gi|254780177|r 178 ISFHGLSLNISPDLSYY---TGIVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257)
Q Consensus 178 vT~HG~alNv~~dL~~F---~~IvPCGl~~~~-------vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257)
..+|+.+|.++.|++.+ -.+.+|++.+.. ||||.++ .+++++++.+.|.+.|.+.|+..+.
T Consensus 157 ~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~~~~~~~~ 227 (262)
T 2c8m_A 157 AKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFR 227 (262)
T ss_dssp EEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf 7999999886389999998648993100220355367513058772-8989999999999999998689761