Query         gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 257
No_of_seqs    124 out of 1284
Neff          4.9 
Searched_HMMs 23785
Date          Mon May 23 04:47:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2qhs_A Lipoyltransferase; glob 100.0       0       0  480.9  23.7  209   21-247    20-236 (237)
  2 1w66_A Lipoyltransferase; lipo 100.0       0       0  471.2  23.9  208   17-238     9-217 (232)
  3 2c8m_A Lipoate-protein ligase   99.9 5.9E-23 2.5E-27  168.2  19.3  209   23-239     4-227 (262)
  4 2p5i_A BH3822 protein; PFAM030  99.8 1.1E-19 4.7E-24  146.9  17.2  204   19-236    12-249 (288)
  5 2p0l_A Lipoate-protein ligase   99.8 5.5E-17 2.3E-21  129.5  21.1  195   27-235    17-247 (288)
  6 3a7r_A Lipoate-protein ligase   99.8 2.6E-17 1.1E-21  131.5  18.7  201   21-240     2-217 (337)
  7 1vqz_A Lipoate-protein ligase,  99.8 8.6E-17 3.6E-21  128.2  17.9  199   19-237    10-224 (341)
  8 2e5a_A Lipoyltransferase 1; li  99.7 9.1E-16 3.8E-20  121.5  18.2  190   32-239    14-218 (347)
  9 2dxu_A Biotin--[acetyl-COA-car  97.0   0.015 6.3E-07   35.8  11.7  122   89-237    48-171 (235)
 10 2eay_A Biotin [acetyl-COA-carb  94.0    0.35 1.5E-05   26.9  12.1  125   88-235    39-166 (233)
 11 1bia_A BIRA bifunctional prote  94.0    0.36 1.5E-05   26.8  10.9  127   89-235   118-251 (321)
 12 2cgh_A Biotin ligase; 1.8A {My  93.4    0.45 1.9E-05   26.2  10.6  127   89-235    71-201 (268)
 13 2ej9_A Putative biotin ligase;  92.7    0.56 2.4E-05   25.6  11.1  126   89-235    40-168 (237)
 14 3bfm_A Biotin protein ligase-l  83.9     2.3 9.7E-05   21.6  12.0   88  125-235    73-172 (235)
 15 2ddz_A 190AA long hypothetical  62.6     7.9 0.00033   18.1   9.3   90  118-234    86-176 (190)
 16 3fxt_A Nucleoside diphosphate-  35.7      21 0.00088   15.4   3.9   66   86-183    28-97  (113)
 17 1sg7_A Putative cation transpo  30.3      24   0.001   14.9   2.3   42  194-236    13-55  (96)
 18 3lr0_A Sensor protein; niaid,   21.0      38  0.0016   13.7   2.2   31  119-149    90-120 (143)

No 1  
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=100.00  E-value=0  Score=480.87  Aligned_cols=209  Identities=33%  Similarity=0.604  Sum_probs=193.5

Q ss_pred             CEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHC------CCCCCEEEEECCCCEE
Q ss_conf             238998-088858899999999999999739978789998068737743478855610------5478249980566707
Q gi|254780177|r   21 PIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLL------SPKSLPVYTTGRGGGY   93 (257)
Q Consensus        21 ~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll------~~~~ipv~~t~RGG~i   93 (257)
                      ++++++ ..|++||+++|++|+++++++.++..+|+||+||||||||+|++++++|++      ...++||++|+|||++
T Consensus        20 ~~~~~v~dLG~i~Y~~a~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~ll~~~~~l~~~~i~v~~t~RGG~i   99 (237)
T 2qhs_A           20 HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDV   99 (237)
T ss_dssp             -CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCE
T ss_conf             97179977898688999999999999996699998699980798376777887443458866752479867994799716


Q ss_pred             EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf             86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r   94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR  173 (257)
Q Consensus        94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~  173 (257)
                      |||||||||+|||+||++   ++++|++.||+++|++|++|||++.++++.+|||+++             +||||||++
T Consensus       100 TyHGPGQLV~YpIl~L~~---~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~-------------~KIasIGi~  163 (237)
T 2qhs_A          100 TYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE-------------DKLCAIGVA  163 (237)
T ss_dssp             EEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETT-------------EEEEEEEEE
T ss_pred             EEECCCCEEEEEHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-------------HHHHHHHHH
T ss_conf             898999667777465553---2999999999999999986266411336777634402-------------159999987


Q ss_pred             CCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHCCCH
Q ss_conf             048889988999954991351734105679785212899-18988999999999999998746111023312421
Q gi|254780177|r  174 IRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYANIND  247 (257)
Q Consensus       174 i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~~~~d  247 (257)
                      ++|||||||||||||+||++|+.|+|||+++..||||++ +|.+++++++++.++++|++.||...++  .+++|
T Consensus       164 v~r~vt~HG~aLNV~~dL~~F~~IvpCGl~~~~vTSL~~elg~~~~~~ev~~~l~~~f~~~Fg~~~ve--~s~~e  236 (237)
T 2qhs_A          164 VKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVE--GSVHE  236 (237)
T ss_dssp             EETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC--------
T ss_pred             HCCCEEECCEEEECCCCHHHHCCEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEC--CCCCC
T ss_conf             24755832268971698277073783688998372469976899999999999999999986996003--65567


No 2  
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=100.00  E-value=0  Score=471.19  Aligned_cols=208  Identities=33%  Similarity=0.545  Sum_probs=190.6

Q ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE
Q ss_conf             78972389980888588999999999999997399787899980687377434788556105478249980566707860
Q gi|254780177|r   17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH   96 (257)
Q Consensus        17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH   96 (257)
                      ..+..|+++ ..|++||+++|++|+++++++.++. +|+|||||||||||+|+++++++++. .++||++|+|||++|||
T Consensus         9 ~~~~~i~v~-~LG~v~Y~~a~~~q~~~~~~~~~~~-~d~llllEH~pVyT~G~~~~~~~l~~-~~i~v~~t~RGG~iTyH   85 (232)
T 1w66_A            9 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGG-ADTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH   85 (232)
T ss_dssp             SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTC-CCEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE
T ss_pred             HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCEEECCCCCCCCCCC-CCCCCEECCCCCEEEEE
T ss_conf             128840798-8897288999999999999985799-98699991688468524776210255-57773482789547897


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC
Q ss_conf             78924777651210012038999999999999998862885324588721674166766655565642101000000048
Q gi|254780177|r   97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK  176 (257)
Q Consensus        97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~  176 (257)
                      ||||||+|||+||++ ..++++||+.||+++|++|++|||+++++++.+||||.+.          ..+||||||++++|
T Consensus        86 GPGQLV~Ypil~L~~-~~~~~~~v~~le~~ii~~l~~~gi~a~~~~~~~Gvwv~~~----------~~~KIasiGv~v~~  154 (232)
T 1w66_A           86 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR  154 (232)
T ss_dssp             CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET
T ss_pred             CCCCEEEEEEECCHH-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------HHHHHHHHHHHHCC
T ss_conf             899889987651121-1466888776899999999842642222367777555575----------25568777645337


Q ss_pred             CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHHH
Q ss_conf             88998899995499135173410567978521289-918988999999999999998746111
Q gi|254780177|r  177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTI  238 (257)
Q Consensus       177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~~  238 (257)
                      ||||||||||||+||++|+.|+|||+++..||||+ ++|.+++++|+++.+.++|.+.|+..+
T Consensus       155 ~vt~HG~alNv~~dL~~f~~IvpCGl~~~~vTSl~~elg~~~~~~ev~~~l~~~~~~~f~~~~  217 (232)
T 1w66_A          155 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL  217 (232)
T ss_dssp             TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CEECCCEEEEECCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             726155699835872437927847997996744069968999899999999999999862305


No 3  
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A*
Probab=99.92  E-value=5.9e-23  Score=168.21  Aligned_cols=209  Identities=14%  Similarity=0.232  Sum_probs=169.3

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEEC
Q ss_conf             899808885889999999999999973997878999806873774347885561-----054782499805667078607
Q gi|254780177|r   23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHG   97 (257)
Q Consensus        23 e~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHG   97 (257)
                      ++.+...+.++...+++.+.+.+....+. ..++.+.+|+|.+|+|++.+..+.     +...++++++-.+||+++||+
T Consensus         4 ~~~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGGaV~hd   82 (262)
T 2c8m_A            4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHD   82 (262)
T ss_dssp             EEECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf             09997799998999999999997153799-97899982799699888898356529899987699589970798379977


Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCC
Q ss_conf             89247776512100120389999999999999988628853245887216741667666555656421010000000488
Q gi|254780177|r   98 PGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW  177 (257)
Q Consensus        98 PGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~  177 (257)
                      |||++.|+|++...  .++..+.+.+.++++++|+.+||++...+ ..++|+....   ..+.....+||+..+.+.+++
T Consensus        83 ~g~l~~s~i~~~~~--~~~~~~y~~i~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~dl~~~~~Ki~G~a~~~~~~  156 (262)
T 2c8m_A           83 LGDLNFSVVRSSDD--MDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKG  156 (262)
T ss_dssp             TTEEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETT
T ss_pred             CCCEEEEEEEECCC--CCHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCEEECCC---CCCCCCCCCCEEEEEEEEECC
T ss_conf             99869999870689--99999999999999999998495158857-6882673365---664123566125356786588


Q ss_pred             EEEEEEEEEECCCCHHH---CCEEECCCCCCC-------CCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             89988999954991351---734105679785-------212899189889999999999999987461110
Q gi|254780177|r  178 ISFHGLSLNISPDLSYY---TGIVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL  239 (257)
Q Consensus       178 vT~HG~alNv~~dL~~F---~~IvPCGl~~~~-------vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~  239 (257)
                      ..+|+.+|.++.|++.+   -.+.+|++.+..       ||||.++ .+++++++.+.|.+.|.+.|+..+.
T Consensus       157 ~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~~~~~~~~  227 (262)
T 2c8m_A          157 AKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFR  227 (262)
T ss_dssp             EEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCE
T ss_conf             7999999886389999998648993100220355367513058772-8989999999999999998689761


No 4  
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=99.85  E-value=1.1e-19  Score=146.92  Aligned_cols=204  Identities=14%  Similarity=0.012  Sum_probs=159.4

Q ss_pred             CCCEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCC-----HH--HHCCCCCCEEEEEC
Q ss_conf             9723899808885889---99999999999997399787899980687377434788-----55--61054782499805
Q gi|254780177|r   19 ISPIRWWVMDNPVDYE---ESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI-----SD--DLLSPKSLPVYTTG   88 (257)
Q Consensus        19 ~~~ie~~~~~G~v~Y~---~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~-----~~--dll~~~~ipv~~t~   88 (257)
                      ..|-++.-+-...|+.   ..++..+.+.+.+.+++.+.+|.|-+|+|++++|++..     +.  +.+...++||++-.
T Consensus        12 ~~~wr~id~~~~~p~~d~~~nmA~deaLl~~~~~~~~~p~lrlw~~~ptv~lG~~q~~~~~~e~~l~~~~~~gi~vvRR~   91 (288)
T 2p5i_A           12 SQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRN   91 (288)
T ss_dssp             --CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEES
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             19889984788776758778769999999997468999889999549989989876678547778999997699489972


Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCC
Q ss_conf             667078607892477765121001203899999999999999886288532458-------8721674166766655565
Q gi|254780177|r   89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLL  161 (257)
Q Consensus        89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~  161 (257)
                      .||+.+||+||||....|++.. ...++..+.+.+.++++++|+.+||++...+       +.--|++            
T Consensus        92 tGGgaV~hd~G~l~~sli~~~~-~~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~~~g~~Dl~v------------  158 (288)
T 2p5i_A           92 SGGLAVVLDSGILNLSLVLKEE-KGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSI------------  158 (288)
T ss_dssp             SCCCCEEECTTEEEEEEEEECC-TTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEE------------
T ss_pred             CCCCEEEECCCCEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEE------------
T ss_conf             6984599569927999997157-667889999999999999999839973453544555778651678------------


Q ss_pred             CCCCCCEEHHEECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCCC------------CCCHHH-HCCCCCHHHHHH
Q ss_conf             64210100000004888998899995499135----1734105679785------------212899-189889999999
Q gi|254780177|r  162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQHG------------VTSLKE-LGYSYSMKYIDT  224 (257)
Q Consensus       162 ~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~~------------vTSl~~-lg~~i~~~ev~~  224 (257)
                       ..+||+.++.+..++...|.-+|-++.|...    ++.+.+|++.++.            ||||++ ++.+++++++.+
T Consensus       159 -~grKI~G~Aq~r~~~~~l~hgtllv~~d~~~~~~~l~~~~~~~~~~k~~~s~~~rV~~~~~tsL~e~l~~~~s~~ev~~  237 (288)
T 2p5i_A          159 -DGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLL  237 (288)
T ss_dssp             -TTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHH
T ss_pred             -CCEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHH
T ss_conf             -8876999767888987999999998089899998862434444223466521354353444769998389999999999


Q ss_pred             HHHHHHHHHHCH
Q ss_conf             999999987461
Q gi|254780177|r  225 LIRKSFESVFGP  236 (257)
Q Consensus       225 ~l~~~f~~~Fg~  236 (257)
                      .+++.|.+..+.
T Consensus       238 ~l~~~~~~~~~~  249 (288)
T 2p5i_A          238 KALMTLQQHGAS  249 (288)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999984675


No 5  
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP: d.104.1.3
Probab=99.79  E-value=5.5e-17  Score=129.45  Aligned_cols=195  Identities=13%  Similarity=0.027  Sum_probs=153.6

Q ss_pred             ECCCCCHHH---HHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-----H--HHCCCCCCEEEEECCCCEEEEE
Q ss_conf             088858899---99999999999973997878999806873774347885-----5--6105478249980566707860
Q gi|254780177|r   27 MDNPVDYEE---SQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-----D--DLLSPKSLPVYTTGRGGGYTYH   96 (257)
Q Consensus        27 ~~G~v~Y~~---al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-----~--dll~~~~ipv~~t~RGG~iTyH   96 (257)
                      .....+..+   .+++-+.++.++..+..+.+|.|-+|+|.+.+|++...     .  +.+...|+++++-..||+.+||
T Consensus        17 ~~~~~~~~d~~~~~a~~e~ll~~v~~~~~~~il~~w~~~ptVvlG~~q~~~p~~e~~~~~l~~~Gi~vvrR~sGGgaV~~   96 (288)
T 2p0l_A           17 KDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVA   96 (288)
T ss_dssp             ECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEE
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEE
T ss_conf             73158754665766899999998404689978999547997998986665730888799999879978996589872898


Q ss_pred             CCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf             78924777651210-012038999999999999998862885324588-------7216741667666555656421010
Q gi|254780177|r   97 GPGQRIIYIMLNLA-KRRKDLRCFVAALEEVIIRTLKILGIVGERRED-------RVGIWVVRLNKTRDNQLLLIEEKIA  168 (257)
Q Consensus        97 GPGQlV~Ypii~L~-~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~-------~~GVWV~~~~~~~~~~~~~~~~KIa  168 (257)
                      +||+|..++|++-. ....++..+.+.+.++++++|+.+||++...+-       ..-|++             ..+||+
T Consensus        97 d~G~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~aL~~lGi~a~~~~~~~~~c~g~~Dl~v-------------~grKi~  163 (288)
T 2p0l_A           97 DEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-------------NGKKFA  163 (288)
T ss_dssp             STTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-------------TTEEEE
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE-------------CCEEEE
T ss_conf             8995599999616644579989999999999999999749851783367877857550768-------------887899


Q ss_pred             EHHEECCCCEEEEEEEEEECCCCHHH----C-------------CEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHH
Q ss_conf             00000048889988999954991351----7-------------34105679785212899-189889999999999999
Q gi|254780177|r  169 AIGIRIRKWISFHGLSLNISPDLSYY----T-------------GIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSF  230 (257)
Q Consensus       169 sIGi~i~~~vT~HG~alNv~~dL~~F----~-------------~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f  230 (257)
                      -.+-+..++..+|..+|.++.|+...    +             ...|+- ....||||.+ +|.+++++++.+.|++.|
T Consensus       164 G~AQrr~~~~~l~hgtllv~~d~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~~~vtsL~~~lg~~~t~eev~~~l~~~~  242 (288)
T 2p0l_A          164 GLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNV-DPEIMANLSDLLDCPMTVEDVIDRMLISL  242 (288)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCC-CTTSBCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHEEEHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             98899989989999999985788999999877777411443343357875-52002459997299999999999999999


Q ss_pred             HHHHC
Q ss_conf             98746
Q gi|254780177|r  231 ESVFG  235 (257)
Q Consensus       231 ~~~Fg  235 (257)
                      .+.++
T Consensus       243 ~~~~~  247 (288)
T 2p0l_A          243 KQVGF  247 (288)
T ss_dssp             HHHTC
T ss_pred             HHHCC
T ss_conf             98657


No 6  
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=99.79  E-value=2.6e-17  Score=131.53  Aligned_cols=201  Identities=17%  Similarity=0.231  Sum_probs=154.6

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-----HCCCCCCEEEEECCCCEEEE
Q ss_conf             2389980888588999999999999997399787899980687377434788556-----10547824998056670786
Q gi|254780177|r   21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-----LLSPKSLPVYTTGRGGGYTY   95 (257)
Q Consensus        21 ~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-----ll~~~~ipv~~t~RGG~iTy   95 (257)
                      .++..++...=|| .-+++.+.+.++..  ....+|.+-+++|++++|++.+...     .+...++|+++-..||+.+|
T Consensus         2 ~~r~i~s~s~dp~-~NlA~ee~Ll~~~~--~~~~~l~~w~~~p~v~iG~~Q~~~~ev~~~~~~~~gi~vvRR~sGGGaV~   78 (337)
T 3a7r_A            2 TLRLLISDSYDPW-FNLAVEECIFRQMP--ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVF   78 (337)
T ss_dssp             CEEEEEECCCCHH-HHHHHHHHHHHHCC--TTCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEE
T ss_pred             CEEEEECCCCCHH-HHHHHHHHHHHCCC--CCCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEE
T ss_conf             5899985899999-99999999995278--89968999716998998999986776588999865996899827972599


Q ss_pred             ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC
Q ss_conf             07892477765121001203899999999999999886288532458872167416676665556564210100000004
Q gi|254780177|r   96 HGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR  175 (257)
Q Consensus        96 HGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~  175 (257)
                      |+|||+..++|.+....  +    -..+.+.++++|+.+||++... ++..++++..         .+.+||+..+.+..
T Consensus        79 hd~g~l~~s~i~~~~~~--~----~~~~~~~i~~aL~~lGi~a~~~-~r~di~~~~~---------~~gkKIsGsAq~~~  142 (337)
T 3a7r_A           79 HDLGNTCFTFMAGKPEY--D----KTISTSIVLNALNALGVSAEAS-GRNDLVVKTV---------EGDRKVSGSAYRET  142 (337)
T ss_dssp             ECTTEEEEEEEEETTTC--C----HHHHHHHHHHHHHHTTCCEEEE-TTTEEEECCT---------TSCEEEEEEEEEEC
T ss_pred             ECCCCEEEEEEECCCCC--C----HHHHHHHHHHHHHHHCCCEEEC-CCCCCEECCC---------CCCEEEEEEEEEEE
T ss_conf             78998799998567510--7----8999999999999819753777-8776200367---------89818998749999


Q ss_pred             CCEEEEEEEEEECCCCHHHC---CEEECCCCC-------CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf             88899889999549913517---341056797-------852128991898899999999999999874611102
Q gi|254780177|r  176 KWISFHGLSLNISPDLSYYT---GIVPCGISQ-------HGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH  240 (257)
Q Consensus       176 ~~vT~HG~alNv~~dL~~F~---~IvPCGl~~-------~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~  240 (257)
                      ++..+|+.+|.++.|++.+.   ...+|++.+       ..||+|.+++.+++++++.+.+++.|.+.||..+..
T Consensus       143 ~~~~l~hgtll~d~d~~~l~~~L~~~~~k~~~k~~~Sv~~rVtnL~e~~~~~~~e~~~~~l~~~f~~~~~~~~~~  217 (337)
T 3a7r_A          143 KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEA  217 (337)
T ss_dssp             SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CCEEEEEEEEECCCCHHHHHHHCCCCCHHHHHCCCCCHHHCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             999999868632799899998619992212440567446243449994799999999999999999984655635


No 7  
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=99.76  E-value=8.6e-17  Score=128.18  Aligned_cols=199  Identities=14%  Similarity=0.135  Sum_probs=152.9

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEE
Q ss_conf             9723899808885889999999999999973997878999806873774347885561-----05478249980566707
Q gi|254780177|r   19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGY   93 (257)
Q Consensus        19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~i   93 (257)
                      ...+++..+...=||. -+++-+.+.+...  ..+.+++|-+++|++++|++.+....     +...++|+++-..||+.
T Consensus        10 ~~~m~~i~~~s~dp~~-NlAlee~L~~~~~--~~~~~l~lw~n~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGa   86 (341)
T 1vqz_A           10 HHHMKYIINHSNDTAF-NIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGA   86 (341)
T ss_dssp             --CEEEEECCCCCHHH-HHHHHHHHHHHCT--TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCC
T ss_pred             CCEEEEEECCCCCHHH-HHHHHHHHHHHCC--CCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCE
T ss_conf             5537999779999889-8999999996078--899889998169989989889837766889998769939998289974


Q ss_pred             EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE
Q ss_conf             86078924777651210012038999999999999998862885324588721674166766655565642101000000
Q gi|254780177|r   94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR  173 (257)
Q Consensus        94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~  173 (257)
                      +||+|||+...+|++....   .....+.+.++++++|+.+||++... ++-.+||++             +||+..+.+
T Consensus        87 VyhD~g~l~~s~i~~~~~~---~~~~y~~~~~~ii~aL~~lGi~a~~~-~rnDi~v~g-------------~KIsG~A~~  149 (341)
T 1vqz_A           87 VYHDLNNLNYTIISKEDEN---KAFDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQA  149 (341)
T ss_dssp             EEECTTEEEEEEEEECCTT---CCCSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEE
T ss_pred             EEECCCCEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCEECC-------------EEEEEEEEE
T ss_conf             9989996799999737665---22119999999999999739763772-468824888-------------686435679


Q ss_pred             CCCCEEEEEEEEEECCCCHHHCCEE---ECCCCC-------CCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf             0488899889999549913517341---056797-------85212899-1898899999999999999874611
Q gi|254780177|r  174 IRKWISFHGLSLNISPDLSYYTGIV---PCGISQ-------HGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPT  237 (257)
Q Consensus       174 i~~~vT~HG~alNv~~dL~~F~~Iv---PCGl~~-------~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~  237 (257)
                      ..++..+|+.+|.++.|++.+....   ++++.+       ..||+|.+ ++.+++++++.+.|.+.|.+.|+..
T Consensus       150 ~~~~~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~~l~~~~~~e~~~~~l~~~f~~~~~~~  224 (341)
T 1vqz_A          150 YINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM  224 (341)
T ss_dssp             EETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred             EECCEEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             858868994200037899999988389940202305642265523089775999999999999999999973888


No 8  
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=99.72  E-value=9.1e-16  Score=121.55  Aligned_cols=190  Identities=13%  Similarity=0.141  Sum_probs=146.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-----HCCCCCCEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf             88999999999999997399787899980687377434788556-----1054782499805667078607892477765
Q gi|254780177|r   32 DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-----LLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM  106 (257)
Q Consensus        32 ~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-----ll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypi  106 (257)
                      |=..-+++-+.+.... ......++.|-++.|++++|++.+...     .+...++|+++-.-||+..||+|||+...+|
T Consensus        14 dp~~NlA~ee~ll~~~-~~~~~~~l~lw~~~p~vviG~~Q~~~~Evn~~~~~~~gi~vvRR~tGGGaVyhD~G~l~~s~i   92 (347)
T 2e5a_A           14 DVYHNLAVEDWIHDHM-NLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDMGNINLTFF   92 (347)
T ss_dssp             CHHHHHHHHHHHHHHC-CCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECTTEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCCCEEEEEE
T ss_conf             9888899999999606-789996899970799899899988056639999987699489982698349953995899999


Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEE
Q ss_conf             12100120389999999999999988628853245887216741667666555656421010000000488899889999
Q gi|254780177|r  107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLN  186 (257)
Q Consensus       107 i~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alN  186 (257)
                      ++..  ..+.+.+...+.+++..++..+++++.   ++-.++|++            .+||+..+.+..++..+|..+|.
T Consensus        93 ~~~~--~~~~~~~~~~i~~al~~~~~~l~~~~~---~rnDi~v~g------------~~KisG~Aq~~~~~~~l~hGTll  155 (347)
T 2e5a_A           93 TTKK--KYDRMENLKLVVRALKAVHPHLDVQAT---KRFDLLLDG------------QFKISGTASKIGRNAAYHHCTLL  155 (347)
T ss_dssp             ECGG--GCCHHHHHHHHHHHHHHHSTTCCEEEC---TTSCEEETT------------TEEEECEEEEECSSCEEEEEEEE
T ss_pred             ECCC--CCCHHHHHHHHHHHHHHHHHHCCEEEC---CCCCEEECC------------CCEEEEEEEEEECCEEEEEEEEE
T ss_conf             6377--789999999999999998764664770---577638548------------82899889998789899986898


Q ss_pred             ECCCCHHH---CCEEECCCCC-------CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             54991351---7341056797-------85212899189889999999999999987461110
Q gi|254780177|r  187 ISPDLSYY---TGIVPCGISQ-------HGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL  239 (257)
Q Consensus       187 v~~dL~~F---~~IvPCGl~~-------~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~  239 (257)
                      ++.|++..   -.+.|+++.+       ..||+|.+++.+++++++.+.+.+.|.+.|+....
T Consensus       156 ~d~d~~~l~~~L~~~~~kl~~kgv~Sv~srV~nL~e~~~~~~~e~~~~al~~~f~~~~~~~~~  218 (347)
T 2e5a_A          156 CGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH  218 (347)
T ss_dssp             SSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred             ECCCHHHHHHHHCCCHHHHHHHCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             438889999871898367565300342642405899589999999999999999998488762


No 9  
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=97.03  E-value=0.015  Score=35.77  Aligned_cols=122  Identities=22%  Similarity=0.221  Sum_probs=80.5

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             66707860789247776512100120389999999999999988628853245-88721674166766655565642101
Q gi|254780177|r   89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEKI  167 (257)
Q Consensus        89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~KI  167 (257)
                      |.|..=+.-||.|.+-.+++..........+.-..--++.+++..++++...+ |.  -|++             .++||
T Consensus        48 R~gr~W~sp~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~iKWPN--Di~~-------------~~kKl  112 (235)
T 2dxu_A           48 ALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKWPN--DVLV-------------NYKKI  112 (235)
T ss_dssp             GGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHHHHHHHHHHTTCCCEEETTT--EEEE-------------TTEEE
T ss_pred             CCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--HHEE-------------CCCEE
T ss_conf             89984467999707986502457677899999999999876555217751587684--0210-------------56411


Q ss_pred             EEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf             00000004888998899995499135173410567978521289-91898899999999999999874611
Q gi|254780177|r  168 AAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPT  237 (257)
Q Consensus       168 asIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~  237 (257)
                      |-|=+.-+.....=|+.||++.++       |     ...||+. +++..++.+++-..+..+|.+.+..-
T Consensus       113 ~GIL~E~~~~~~viGiGiNl~~~~-------~-----~~~tsl~~~~~~~~~~~~l~~~l~~~l~~~~~~~  171 (235)
T 2dxu_A          113 AGVLVEGKGDKIVLGIGLNVNNKV-------P-----NGATSMKLELGSEVPLLSVFRSLITNLDRLYLNF  171 (235)
T ss_dssp             EEEEEEECSSCEEEEEEECSSSCC-------C-----TTBCCHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCEEEEEEEEECCCCC-------C-----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             366554204569999977658779-------9-----6341199886204686899999999999999999


No 10 
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=94.02  E-value=0.35  Score=26.92  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             CCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCC-CCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             5667078607892477765121001203899999999999999886288-53245-887216741667666555656421
Q gi|254780177|r   88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGI-VGERR-EDRVGIWVVRLNKTRDNQLLLIEE  165 (257)
Q Consensus        88 ~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI-~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~  165 (257)
                      +|.|..=+.-||.|.+-.+++..... ....+--..--++.++|..++- +...+ |.  .|++             ..+
T Consensus        39 GR~gr~W~s~~g~l~~S~~~~~~~~~-~~~~l~~~~~lai~~~l~~~~~~~v~iKWPN--DI~~-------------~~k  102 (233)
T 2eay_A           39 GRLGRKWLSQEGGLYFSFLLNPKEFE-NLLQLPLVLGLSVSEALEEITEIPFSLKWPN--DVYF-------------QEK  102 (233)
T ss_dssp             ----------CCEEEEEEEECTTTCC-CTTHHHHHHHHHHHHHHHHHHCCCCEEETTT--EEEE-------------TTE
T ss_pred             CCCCCEEECCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCEECCC--HHEE-------------CCC
T ss_conf             98998611899984563122642123-3678999999999987877456664061784--5236-------------788


Q ss_pred             CCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             01000000048889988999954991351734105679785212899-18988999999999999998746
Q gi|254780177|r  166 KIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       166 KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      |+|-|=+.....-..=|+.+|++..-      .|-.+. ..+|||.+ .+..++.+++-..+..+|.+.+.
T Consensus       103 Ki~GIL~E~~~~~~viGiGin~~~~~------~~~~~~-~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~  166 (233)
T 2eay_A          103 KVSGVLCELSKDKLIVGIGINVNQRE------IPEEIK-DRATTLYEITGKDWDRKEVLLKVLKRISENLK  166 (233)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSCCC------CCTTTT-TTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECEEEEEEEEEEEEEECCC------CCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             62344000103579999999860676------761134-44337888648865789999999999999999


No 11 
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=93.96  E-value=0.36  Score=26.84  Aligned_cols=127  Identities=15%  Similarity=0.251  Sum_probs=71.8

Q ss_pred             CCCEEEEECC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             6670786078-92-477765121001203899999999999999886288532458872167416676665556564210
Q gi|254780177|r   89 RGGGYTYHGP-GQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK  166 (257)
Q Consensus        89 RGG~iTyHGP-GQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~K  166 (257)
                      |.|. +|+-| |. |-+-.++........+..+--..--++.++|..++......+=-=-|++             .++|
T Consensus       118 R~GR-~W~Sp~g~~l~~S~~l~~~~~~~~~~~lsl~~~~av~~al~~~~~~~v~iKWPNDI~~-------------~~kK  183 (321)
T 1bia_A          118 RRGR-KWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL-------------QDRK  183 (321)
T ss_dssp             --------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE-------------TTEE
T ss_pred             CCCC-EEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH-------------CCCC
T ss_conf             9989-7068999988999982675364466888999999999999983665167636973300-------------1101


Q ss_pred             CEEHHEECC---CCEE--EEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             100000004---8889--98899995499135173410567978521289918988999999999999998746
Q gi|254780177|r  167 IAAIGIRIR---KWIS--FHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       167 IasIGi~i~---~~vT--~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      ||-|=+-..   ..+.  .=|+.+|++.  ..|    |-.+.+...+++.+.+..++.+++-..+.++|...+.
T Consensus       184 i~GIL~E~~~~~~~~~~~viGiGiN~~~--~~~----~~~~~~~~~s~~~~~~~~~~r~~l~~~ll~~l~~~~~  251 (321)
T 1bia_A          184 LAGILVELTGKTGDAAQIVIGAGINMAM--RRV----EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALE  251 (321)
T ss_dssp             EEEEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHEEEEEEEECCCCEEEEEEEECCCCCC--CCC----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             1234333220355203799997653356--778----5331013457787627654767799999999999999


No 12 
>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A
Probab=93.37  E-value=0.45  Score=26.19  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             CCCEEEEEC-CCC-EEEEEEECCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             667078607-892-47776512100120389999999-999999988628853245887216741667666555656421
Q gi|254780177|r   89 RGGGYTYHG-PGQ-RIIYIMLNLAKRRKDLRCFVAAL-EEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEE  165 (257)
Q Consensus        89 RGG~iTyHG-PGQ-lV~Ypii~L~~~~~~v~~yv~~l-E~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~  165 (257)
                      |.|. +|+. ||. |.+-..+.....+.....++..+ --++.++++.+--.     ....+.++=+|+     ....++
T Consensus        71 R~gr-~W~Sp~g~~l~~S~~~~~~~~~~~~~~~lsl~~~lav~~al~~l~~~-----~~~~~~iKWPND-----i~~~~k  139 (268)
T 2cgh_A           71 RHGR-GWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAV-----PPAETGLKWPND-----VLARGG  139 (268)
T ss_dssp             ---------CTTSEEEEEEEEECTTSCGGGTTHHHHHHHHHHHHHHGGGSSS-----CGGGEEEETTTE-----EEETTE
T ss_pred             CCCC-CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEECCCH-----HHHHCC
T ss_conf             5998-31479999389987735677646677788999999999877775148-----765158846825-----654301


Q ss_pred             CCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHH-CCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             010000000488899889999549913517341056797852128991-8988999999999999998746
Q gi|254780177|r  166 KIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKEL-GYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       166 KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~l-g~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      |||-|=+....-..-=|+.||++..-        ..+ +...|||.++ +..++.+++-..+.++|...+.
T Consensus       140 Kl~GIL~E~~~~~vvIGIGINv~~~p--------~~~-~~~~tsL~~~~~~~~~~~~l~~~l~~~l~~~~~  201 (268)
T 2cgh_A          140 KLAGILAEVAQPFVVLGVGLNVTQAP--------EEV-DPDATSLLDLGVAAPDRNRIASRLLRELEARII  201 (268)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESCCC-----------------CCTGGGTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEECCEEEEEEEEECCCCC--------HHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             12898777302448999988576585--------355-431001555445435788999999999999999


No 13 
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=92.68  E-value=0.56  Score=25.55  Aligned_cols=126  Identities=20%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             6670786078924777651210012038999999999999998862-8853245-8872167416676665556564210
Q gi|254780177|r   89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL-GIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEK  166 (257)
Q Consensus        89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~-gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~K  166 (257)
                      |.|..=+--||.+.+-.+++.+...  ...+--..--++.+++..+ +++...+ |.  -||++.+         ...+|
T Consensus        40 R~gr~W~Sp~g~l~~S~~~~~~~~~--~~~l~l~~~~ai~~~l~~~~~~~~~lKWPN--Di~~~~~---------~~~kK  106 (237)
T 2ej9_A           40 RWGRVWYSDEGGLYFSMVLDSKLYN--PKVINLLVPICIIEVLKNYVDKELGLKFPN--DIMVKVN---------DNYKK  106 (237)
T ss_dssp             GGGCBCCCCTTSEEEEEEEETTSSC--HHHHHHHHHHHHHHHHTTTCCSCEEEETTT--EEEEEET---------TEEEE
T ss_pred             CCCCEEECCCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEECCC--CEEEEEC---------CCCCE
T ss_conf             8998617899984344414324468--556236778998887765314440330466--3798505---------78866


Q ss_pred             CEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             1000000048889988999954991351734105679785212899-18988999999999999998746
Q gi|254780177|r  167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       167 IasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      ||-|=+-.......=|+.||++.+...        .....+|||.+ .|..++.+++-..+.++|...+.
T Consensus       107 i~GIL~E~~~~~~viGiGINvn~~~~~--------~~~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~  168 (237)
T 2ej9_A          107 LGGILTELTDDYMIIGIGINVNNQIRN--------EIREIAISLKEITGKELDKVEILSNFLKTFESYLE  168 (237)
T ss_dssp             EEEEEEEECSSEEEEEEEECSSSCCCG--------GGGGTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCEEEEEEEEECCCCCCC--------CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999986304770799999962677872--------01355455887538767999999999999999999


No 14 
>3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP}
Probab=83.89  E-value=2.3  Score=21.59  Aligned_cols=88  Identities=11%  Similarity=0.018  Sum_probs=53.7

Q ss_pred             HHHHHHHHHCC---CCCC-CCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEEC-------CCCEEEEEEEEEECCCCHH
Q ss_conf             99999988628---8532-45887216741667666555656421010000000-------4888998899995499135
Q gi|254780177|r  125 EVIIRTLKILG---IVGE-RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI-------RKWISFHGLSLNISPDLSY  193 (257)
Q Consensus       125 ~~ii~~l~~~g---I~~~-~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i-------~~~vT~HG~alNv~~dL~~  193 (257)
                      -++.++|..++   ++.. ..|.  =||++             .+|+|-|=+..       +...--=|+.||++.+-  
T Consensus        73 vAv~~al~~~~~~~v~v~lKWPN--DIli~-------------gkKl~GILiE~~~~~~~~~~~~vviGiGiNv~~~~--  135 (235)
T 3bfm_A           73 VGFQNALGALAPPEVAVHLDWNG--ALRIN-------------GARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEG--  135 (235)
T ss_dssp             HHHHHHHHHHSCTTCCEEECTTS--EEEET-------------TEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCC--
T ss_pred             HHHHHHHHHHCCCCCEEEEECCC--CEEEC-------------CCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCC--
T ss_conf             99999999866977415862798--35977-------------86310688862136776655389999775047787--


Q ss_pred             HCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             1734105679785212899-18988999999999999998746
Q gi|254780177|r  194 YTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG  235 (257)
Q Consensus       194 F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg  235 (257)
                      +..      .....|||.+ .+..++.+++-..+.++|...+.
T Consensus       136 ~~~------~~~~~tsL~~~~~~~~~~~~ll~~l~~~l~~~~~  172 (235)
T 3bfm_A          136 DGG------ETPDETALYAEGCADVAAPRLLESWARHCLHWIN  172 (235)
T ss_dssp             SSC------CCCCSCCGGGTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCC------CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             654------4454265778529999999999999999999755


No 15 
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} SCOP: d.104.1.4
Probab=62.59  E-value=7.9  Score=18.10  Aligned_cols=90  Identities=23%  Similarity=0.232  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEE-EEEEEEECCCCHHHCC
Q ss_conf             999999999999988628853245887216741667666555656421010000000488899-8899995499135173
Q gi|254780177|r  118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF-HGLSLNISPDLSYYTG  196 (257)
Q Consensus       118 ~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~-HG~alNv~~dL~~F~~  196 (257)
                      .+-|.|-..+-..|.++|++..|.-+  -+||++              |=.|+-|+...-+|. =-++|||...-     
T Consensus        86 ~rQRLl~~i~~e~L~~~g~~~~r~GD--DLyv~~--------------~KlSVSIAt~s~vS~kIH~GINV~~~g-----  144 (190)
T 2ddz_A           86 SLQKLLIARLVELLWNYGIEASRRGD--DIYVNG--------------RKLSISIATVSPVSIKIHIGLNVKTVG-----  144 (190)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEETT--EEEETT--------------EECEEEEEEECSSCEEEEEEEESCCSS-----
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEECCC--EEEECC--------------CEEEEEEEECCCCCEEEEEEEEEECCC-----
T ss_conf             99999999999999975986176278--578869--------------778999996078725899878875167-----


Q ss_pred             EEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             41056797852128991898899999999999999874
Q gi|254780177|r  197 IVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF  234 (257)
Q Consensus       197 IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F  234 (257)
                       +|   ++....||.++|.  +..++.+.+...|.+.+
T Consensus       145 -~P---~~v~a~~L~d~g~--d~~~~m~~i~~~y~~E~  176 (190)
T 2ddz_A          145 -VP---PGVDAIGLEELGI--DPTEFMERSAKALVEEI  176 (190)
T ss_dssp             -CC---SSSCBCCHHHHTC--CHHHHHHHHHHHHHHHH
T ss_pred             -CC---CCCCEECHHHCCC--CHHHHHHHHHHHHHHHH
T ss_conf             -47---8740403654277--89999999999999999


No 16 
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth factor, FGF-2 regulation; 2.30A {Homo sapiens}
Probab=35.74  E-value=21  Score=15.35  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=42.9

Q ss_pred             EECCCCEEEEECCCCEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             80566707860789247776512100----12038999999999999998862885324588721674166766655565
Q gi|254780177|r   86 TTGRGGGYTYHGPGQRIIYIMLNLAK----RRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL  161 (257)
Q Consensus        86 ~t~RGG~iTyHGPGQlV~Ypii~L~~----~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~  161 (257)
                      ..||=|+||            +|+.+    ...|...|...|.+++..-         +.+++.|||+.=          
T Consensus        28 ~~DrygGV~------------Vd~~~l~~~~~~d~~~F~~~L~~Sl~~W---------r~~gkr~VWlkl----------   76 (113)
T 3fxt_A           28 ELDRFGGIS------------VRLARLDALDRLDAAAFQKGLQAAVQQW---------RSEGRTAVWLHI----------   76 (113)
T ss_dssp             EECTTSCEE------------EEHHHHTTTSCBCHHHHHHHHHHHHHHH---------HHTTCCEEEEEE----------
T ss_pred             CCCCCCCEE------------ECCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHCCCEEEEEEE----------
T ss_conf             503679999------------8465467756479999999999999999---------986985899982----------


Q ss_pred             CCCCCCEEHHEECCCCEEEEEE
Q ss_conf             6421010000000488899889
Q gi|254780177|r  162 LIEEKIAAIGIRIRKWISFHGL  183 (257)
Q Consensus       162 ~~~~KIasIGi~i~~~vT~HG~  183 (257)
                       +-.+-.-|-+.++.+..||=.
T Consensus        77 -pi~~s~lIp~a~~~GF~fHHA   97 (113)
T 3fxt_A           77 -PILQSRFIAPAASLGFCFHHA   97 (113)
T ss_dssp             -EGGGGGGHHHHHHTTCEEEEE
T ss_pred             -CHHHHHHHHHHHHCCCEEECC
T ss_conf             -889976789999769614658


No 17 
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=30.30  E-value=24  Score=14.95  Aligned_cols=42  Identities=14%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             HCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf             173410567978521289-9189889999999999999987461
Q gi|254780177|r  194 YTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGP  236 (257)
Q Consensus       194 F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~  236 (257)
                      -++++|||.+=...+.|- .+-..+. ...+.++.+.|...|.+
T Consensus        13 ~~~~~~~~~PY~s~~dLP~sVr~~LP-~hAQ~Iy~kafNsA~e~   55 (96)
T 1sg7_A           13 SSGFNPRGSPYKTKSDLPESVKHVLP-SHAQDIYKEAFNSAWDQ   55 (96)
T ss_dssp             ---------CCSSSTTSCHHHHTTCC-SHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHCCHHHHHHCC-HHHHHHHHHHHHHHHHH
T ss_conf             46779999997695568699998688-99999999999999998


No 18 
>3lr0_A Sensor protein; niaid, seattle structural genomics center for infectious DIS ssgcid, PH, RISS, iodide phased, burkholder melioidosis; 1.90A {Burkholderia pseudomallei} PDB: 3lr3_A 3lr5_A 3lr4_A
Probab=21.03  E-value=38  Score=13.68  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             9999999999998862885324588721674
Q gi|254780177|r  119 FVAALEEVIIRTLKILGIVGERREDRVGIWV  149 (257)
Q Consensus       119 yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV  149 (257)
                      |.+.+++-+..-|..=-+-+....+.||+||
T Consensus        90 ~~~~v~~el~~rLG~~TiVA~~vn~~pGlWV  120 (143)
T 3lr0_A           90 VNRLIEHDIRSRLGDDTVIAQSVNDIPGVWI  120 (143)
T ss_dssp             THHHHHHHHHHHHCTTCCEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCEEE
T ss_conf             9999999999865999889765679675689


Done!