Query gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 257 No_of_seqs 124 out of 1284 Neff 4.9 Searched_HMMs 23785 Date Mon May 23 04:47:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780177.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2qhs_A Lipoyltransferase; glob 100.0 0 0 480.9 23.7 209 21-247 20-236 (237) 2 1w66_A Lipoyltransferase; lipo 100.0 0 0 471.2 23.9 208 17-238 9-217 (232) 3 2c8m_A Lipoate-protein ligase 99.9 5.9E-23 2.5E-27 168.2 19.3 209 23-239 4-227 (262) 4 2p5i_A BH3822 protein; PFAM030 99.8 1.1E-19 4.7E-24 146.9 17.2 204 19-236 12-249 (288) 5 2p0l_A Lipoate-protein ligase 99.8 5.5E-17 2.3E-21 129.5 21.1 195 27-235 17-247 (288) 6 3a7r_A Lipoate-protein ligase 99.8 2.6E-17 1.1E-21 131.5 18.7 201 21-240 2-217 (337) 7 1vqz_A Lipoate-protein ligase, 99.8 8.6E-17 3.6E-21 128.2 17.9 199 19-237 10-224 (341) 8 2e5a_A Lipoyltransferase 1; li 99.7 9.1E-16 3.8E-20 121.5 18.2 190 32-239 14-218 (347) 9 2dxu_A Biotin--[acetyl-COA-car 97.0 0.015 6.3E-07 35.8 11.7 122 89-237 48-171 (235) 10 2eay_A Biotin [acetyl-COA-carb 94.0 0.35 1.5E-05 26.9 12.1 125 88-235 39-166 (233) 11 1bia_A BIRA bifunctional prote 94.0 0.36 1.5E-05 26.8 10.9 127 89-235 118-251 (321) 12 2cgh_A Biotin ligase; 1.8A {My 93.4 0.45 1.9E-05 26.2 10.6 127 89-235 71-201 (268) 13 2ej9_A Putative biotin ligase; 92.7 0.56 2.4E-05 25.6 11.1 126 89-235 40-168 (237) 14 3bfm_A Biotin protein ligase-l 83.9 2.3 9.7E-05 21.6 12.0 88 125-235 73-172 (235) 15 2ddz_A 190AA long hypothetical 62.6 7.9 0.00033 18.1 9.3 90 118-234 86-176 (190) 16 3fxt_A Nucleoside diphosphate- 35.7 21 0.00088 15.4 3.9 66 86-183 28-97 (113) 17 1sg7_A Putative cation transpo 30.3 24 0.001 14.9 2.3 42 194-236 13-55 (96) 18 3lr0_A Sensor protein; niaid, 21.0 38 0.0016 13.7 2.2 31 119-149 90-120 (143) No 1 >2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A Probab=100.00 E-value=0 Score=480.87 Aligned_cols=209 Identities=33% Similarity=0.604 Sum_probs=193.5 Q ss_pred CEEEEE-ECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHC------CCCCCEEEEECCCCEE Q ss_conf 238998-088858899999999999999739978789998068737743478855610------5478249980566707 Q gi|254780177|r 21 PIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLL------SPKSLPVYTTGRGGGY 93 (257) Q Consensus 21 ~ie~~~-~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll------~~~~ipv~~t~RGG~i 93 (257) ++++++ ..|++||+++|++|+++++++.++..+|+||+||||||||+|++++++|++ ...++||++|+|||++ T Consensus 20 ~~~~~v~dLG~i~Y~~a~~~Q~~l~~~~~~~~~~d~llllEH~pVyT~Gr~~~~~~ll~~~~~l~~~~i~v~~t~RGG~i 99 (237) T 2qhs_A 20 HMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPRVITLGRKATGENLLFPESWYRENGFELYWVERGGDV 99 (237) T ss_dssp -CEEEEEEEEECCHHHHHHHHHHHHHHHHTTCSCCEEEEEECSSEEEECTTCCGGGBSSCHHHHHHTTCEEEECCSSSSE T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCE T ss_conf 97179977898688999999999999996699998699980798376777887443458866752479867994799716 Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000 Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257) Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257) |||||||||+|||+||++ ++++|++.||+++|++|++|||++.++++.+|||+++ +||||||++ T Consensus 100 TyHGPGQLV~YpIl~L~~---~~~~~v~~le~~ii~~l~~~gi~~~~~~~~~GVwv~~-------------~KIasIGi~ 163 (237) T 2qhs_A 100 TYHGPGQLVGYPIFPVGR---EVRRFLRQIEEAIVRVAAGYGISAYPTPGYAGVWVGE-------------DKLCAIGVA 163 (237) T ss_dssp EEECTTEEEEEEECCCTT---CHHHHHHHHHHHHHHHHHHTTCCCBCCSSSSSEEETT-------------EEEEEEEEE T ss_pred EEECCCCEEEEEHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH-------------HHHHHHHHH T ss_conf 898999667777465553---2999999999999999986266411336777634402-------------159999987 Q ss_pred CCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHHHHCHHHCCCH Q ss_conf 048889988999954991351734105679785212899-18988999999999999998746111023312421 Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEYANIND 247 (257) Q Consensus 174 i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~~~~~~~~~~d 247 (257) ++|||||||||||||+||++|+.|+|||+++..||||++ +|.+++++++++.++++|++.||...++ .+++| T Consensus 164 v~r~vt~HG~aLNV~~dL~~F~~IvpCGl~~~~vTSL~~elg~~~~~~ev~~~l~~~f~~~Fg~~~ve--~s~~e 236 (237) T 2qhs_A 164 VKEGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVE--GSVHE 236 (237) T ss_dssp EETTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC-------- T ss_pred HCCCEEECCEEEECCCCHHHHCCEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEC--CCCCC T ss_conf 24755832268971698277073783688998372469976899999999999999999986996003--65567 No 2 >1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Probab=100.00 E-value=0 Score=471.19 Aligned_cols=208 Identities=33% Similarity=0.545 Sum_probs=190.6 Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCCCEEEEECCCCEEEEE Q ss_conf 78972389980888588999999999999997399787899980687377434788556105478249980566707860 Q gi|254780177|r 17 ENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYH 96 (257) Q Consensus 17 ~~~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dll~~~~ipv~~t~RGG~iTyH 96 (257) ..+..|+++ ..|++||+++|++|+++++++.++. +|+|||||||||||+|+++++++++. .++||++|+|||++||| T Consensus 9 ~~~~~i~v~-~LG~v~Y~~a~~~q~~~~~~~~~~~-~d~llllEH~pVyT~G~~~~~~~l~~-~~i~v~~t~RGG~iTyH 85 (232) T 1w66_A 9 SKLSAIDVR-QLGTVDYRTAWQLQRELADARVAGG-ADTLLLLEHPAVYTAGRRTETHERPI-DGTPVVDTDRGGKITWH 85 (232) T ss_dssp SCCSCCEEE-EEEECCHHHHHHHHHHHHHHHHTTC-CCEEEEEECCSEEEECTTCCGGGSCT-TCCCCEECSSSSSEEEE T ss_pred HCCCCEEEE-ECCCCCHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCEEECCCCCCCCCCC-CCCCCEECCCCCEEEEE T ss_conf 128840798-8897288999999999999985799-98699991688468524776210255-57773482789547897 Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCC Q ss_conf 78924777651210012038999999999999998862885324588721674166766655565642101000000048 Q gi|254780177|r 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRK 176 (257) Q Consensus 97 GPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~ 176 (257) ||||||+|||+||++ ..++++||+.||+++|++|++|||+++++++.+||||.+. ..+||||||++++| T Consensus 86 GPGQLV~Ypil~L~~-~~~~~~~v~~le~~ii~~l~~~gi~a~~~~~~~Gvwv~~~----------~~~KIasiGv~v~~ 154 (232) T 1w66_A 86 GPGQLVGYPIIGLAE-PLDVVNYVRRLEESLIQVCADLGLHAGRVDGRSGVWLPGR----------PARKVAAIGVRVSR 154 (232) T ss_dssp CTTEEEEEEECBBCS-SCCHHHHHHHHHHHHHHHHHHTTCCCEEETTEEEEEECSS----------SCEEEEEEEEEEET T ss_pred CCCCEEEEEEECCHH-CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----------HHHHHHHHHHHHCC T ss_conf 899889987651121-1466888776899999999842642222367777555575----------25568777645337 Q ss_pred CEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHHH Q ss_conf 88998899995499135173410567978521289-918988999999999999998746111 Q gi|254780177|r 177 WISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTI 238 (257) Q Consensus 177 ~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~~ 238 (257) ||||||||||||+||++|+.|+|||+++..||||+ ++|.+++++|+++.+.++|.+.|+..+ T Consensus 155 ~vt~HG~alNv~~dL~~f~~IvpCGl~~~~vTSl~~elg~~~~~~ev~~~l~~~~~~~f~~~~ 217 (232) T 1w66_A 155 ATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 217 (232) T ss_dssp TEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTCC T ss_pred CEECCCEEEEECCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 726155699835872437927847997996744069968999899999999999999862305 No 3 >2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* Probab=99.92 E-value=5.9e-23 Score=168.21 Aligned_cols=209 Identities=14% Similarity=0.232 Sum_probs=169.3 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEEC Q ss_conf 899808885889999999999999973997878999806873774347885561-----054782499805667078607 Q gi|254780177|r 23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHG 97 (257) Q Consensus 23 e~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHG 97 (257) ++.+...+.++...+++.+.+.+....+. ..++.+.+|+|.+|+|++.+..+. +...++++++-.+||+++||+ T Consensus 4 ~~~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGGaV~hd 82 (262) T 2c8m_A 4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHD 82 (262) T ss_dssp EEECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEEC T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEEC T ss_conf 09997799998999999999997153799-97899982799699888898356529899987699589970798379977 Q ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCC Q ss_conf 89247776512100120389999999999999988628853245887216741667666555656421010000000488 Q gi|254780177|r 98 PGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW 177 (257) Q Consensus 98 PGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~ 177 (257) |||++.|+|++... .++..+.+.+.++++++|+.+||++...+ ..++|+.... ..+.....+||+..+.+.+++ T Consensus 83 ~g~l~~s~i~~~~~--~~~~~~y~~i~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~dl~~~~~Ki~G~a~~~~~~ 156 (262) T 2c8m_A 83 LGDLNFSVVRSSDD--MDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKG 156 (262) T ss_dssp TTEEEEEEEEECSS--CCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETT T ss_pred CCCEEEEEEEECCC--CCHHHHHHHHHHHHHHHHHHCCCCEEECC-CCCCEEECCC---CCCCCCCCCCEEEEEEEEECC T ss_conf 99869999870689--99999999999999999998495158857-6882673365---664123566125356786588 Q ss_pred EEEEEEEEEECCCCHHH---CCEEECCCCCCC-------CCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH Q ss_conf 89988999954991351---734105679785-------212899189889999999999999987461110 Q gi|254780177|r 178 ISFHGLSLNISPDLSYY---TGIVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257) Q Consensus 178 vT~HG~alNv~~dL~~F---~~IvPCGl~~~~-------vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257) ..+|+.+|.++.|++.+ -.+.+|++.+.. ||||.++ .+++++++.+.|.+.|.+.|+..+. T Consensus 157 ~~l~hgsll~~~d~~~~~~~l~~p~~~~~~k~~~s~~~~vt~l~~~-~~~~~eev~~~l~~~f~~~~~~~~~ 227 (262) T 2c8m_A 157 AKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFR 227 (262) T ss_dssp EEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEE T ss_pred EEEEEEEEEECCCHHHHHHHHCCCCHHHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCE T ss_conf 7999999886389999998648993100220355367513058772-8989999999999999998689761 No 4 >2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Probab=99.85 E-value=1.1e-19 Score=146.92 Aligned_cols=204 Identities=14% Similarity=0.012 Sum_probs=159.4 Q ss_pred CCCEEEEEECCCCCHH---HHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCC-----HH--HHCCCCCCEEEEEC Q ss_conf 9723899808885889---99999999999997399787899980687377434788-----55--61054782499805 Q gi|254780177|r 19 ISPIRWWVMDNPVDYE---ESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI-----SD--DLLSPKSLPVYTTG 88 (257) Q Consensus 19 ~~~ie~~~~~G~v~Y~---~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~-----~~--dll~~~~ipv~~t~ 88 (257) ..|-++.-+-...|+. ..++..+.+.+.+.+++.+.+|.|-+|+|++++|++.. +. +.+...++||++-. T Consensus 12 ~~~wr~id~~~~~p~~d~~~nmA~deaLl~~~~~~~~~p~lrlw~~~ptv~lG~~q~~~~~~e~~l~~~~~~gi~vvRR~ 91 (288) T 2p5i_A 12 SQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDVIVRN 91 (288) T ss_dssp --CCEEEEESSCCTTSCHHHHHHHHHHHHHHHTTTSSCCEEEEECCSSEEEEEHHHHTSTTHHHHHHHHHHTTCEEEEES T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 19889984788776758778769999999997468999889999549989989876678547778999997699489972 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------CCCEEEECCCCCCCCCCCC Q ss_conf 667078607892477765121001203899999999999999886288532458-------8721674166766655565 Q gi|254780177|r 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE-------DRVGIWVVRLNKTRDNQLL 161 (257) Q Consensus 89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~-------~~~GVWV~~~~~~~~~~~~ 161 (257) .||+.+||+||||....|++.. ...++..+.+.+.++++++|+.+||++...+ +.--|++ T Consensus 92 tGGgaV~hd~G~l~~sli~~~~-~~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~~~~~~~~g~~Dl~v------------ 158 (288) T 2p5i_A 92 SGGLAVVLDSGILNLSLVLKEE-KGFSIDDGYELMYELICSMFQDHREQIEAREIVGSYCPGSYDLSI------------ 158 (288) T ss_dssp SCCCCEEECTTEEEEEEEEECC-TTCCHHHHHHHHHHHHHHHTC---CCCEECCCTTSSSCCTTCEEE------------ T ss_pred CCCCEEEECCCCEEEEEEEECC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEE------------ T ss_conf 6984599569927999997157-667889999999999999999839973453544555778651678------------ Q ss_pred CCCCCCEEHHEECCCCEEEEEEEEEECCCCHH----HCCEEECCCCCCC------------CCCHHH-HCCCCCHHHHHH Q ss_conf 64210100000004888998899995499135----1734105679785------------212899-189889999999 Q gi|254780177|r 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSY----YTGIVPCGISQHG------------VTSLKE-LGYSYSMKYIDT 224 (257) Q Consensus 162 ~~~~KIasIGi~i~~~vT~HG~alNv~~dL~~----F~~IvPCGl~~~~------------vTSl~~-lg~~i~~~ev~~ 224 (257) ..+||+.++.+..++...|.-+|-++.|... ++.+.+|++.++. ||||++ ++.+++++++.+ T Consensus 159 -~grKI~G~Aq~r~~~~~l~hgtllv~~d~~~~~~~l~~~~~~~~~~k~~~s~~~rV~~~~~tsL~e~l~~~~s~~ev~~ 237 (288) T 2p5i_A 159 -DGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLL 237 (288) T ss_dssp -TTEEEEEEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHH T ss_pred -CCEEEEEEEEEEECCEEEEEEEEEEECCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHH T ss_conf -8876999767888987999999998089899998862434444223466521354353444769998389999999999 Q ss_pred HHHHHHHHHHCH Q ss_conf 999999987461 Q gi|254780177|r 225 LIRKSFESVFGP 236 (257) Q Consensus 225 ~l~~~f~~~Fg~ 236 (257) .+++.|.+..+. T Consensus 238 ~l~~~~~~~~~~ 249 (288) T 2p5i_A 238 KALMTLQQHGAS 249 (288) T ss_dssp HHHHHHHHTTCC T ss_pred HHHHHHHHHCCC T ss_conf 999999984675 No 5 >2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} SCOP: d.104.1.3 Probab=99.79 E-value=5.5e-17 Score=129.45 Aligned_cols=195 Identities=13% Similarity=0.027 Sum_probs=153.6 Q ss_pred ECCCCCHHH---HHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCH-----H--HHCCCCCCEEEEECCCCEEEEE Q ss_conf 088858899---99999999999973997878999806873774347885-----5--6105478249980566707860 Q gi|254780177|r 27 MDNPVDYEE---SQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAIS-----D--DLLSPKSLPVYTTGRGGGYTYH 96 (257) Q Consensus 27 ~~G~v~Y~~---al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~-----~--dll~~~~ipv~~t~RGG~iTyH 96 (257) .....+..+ .+++-+.++.++..+..+.+|.|-+|+|.+.+|++... . +.+...|+++++-..||+.+|| T Consensus 17 ~~~~~~~~d~~~~~a~~e~ll~~v~~~~~~~il~~w~~~ptVvlG~~q~~~p~~e~~~~~l~~~Gi~vvrR~sGGgaV~~ 96 (288) T 2p0l_A 17 KDYVTDAQDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVA 96 (288) T ss_dssp ECCBCSGGGTTHHHHHHHHHHHHHHHSCSCEEEEECCBSSEEEECTTGGGCTTHHHHHHHHHTTTCEEEECTTCCSCEEE T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCEEEE T ss_conf 73158754665766899999998404689978999547997998986665730888799999879978996589872898 Q ss_pred CCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-------CCEEEECCCCCCCCCCCCCCCCCCE Q ss_conf 78924777651210-012038999999999999998862885324588-------7216741667666555656421010 Q gi|254780177|r 97 GPGQRIIYIMLNLA-KRRKDLRCFVAALEEVIIRTLKILGIVGERRED-------RVGIWVVRLNKTRDNQLLLIEEKIA 168 (257) Q Consensus 97 GPGQlV~Ypii~L~-~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~-------~~GVWV~~~~~~~~~~~~~~~~KIa 168 (257) +||+|..++|++-. ....++..+.+.+.++++++|+.+||++...+- ..-|++ ..+||+ T Consensus 97 d~G~l~~s~i~p~~~~~~~~i~~~y~~~~~~i~~aL~~lGi~a~~~~~~~~~c~g~~Dl~v-------------~grKi~ 163 (288) T 2p0l_A 97 DEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFEVETSYCPGKFDLSI-------------NGKKFA 163 (288) T ss_dssp STTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSCSCCEECCCTTSSSCCTTCEEE-------------TTEEEE T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEE-------------CCEEEE T ss_conf 8995599999616644579989999999999999999749851783367877857550768-------------887899 Q ss_pred EHHEECCCCEEEEEEEEEECCCCHHH----C-------------CEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHH Q ss_conf 00000048889988999954991351----7-------------34105679785212899-189889999999999999 Q gi|254780177|r 169 AIGIRIRKWISFHGLSLNISPDLSYY----T-------------GIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSF 230 (257) Q Consensus 169 sIGi~i~~~vT~HG~alNv~~dL~~F----~-------------~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f 230 (257) -.+-+..++..+|..+|.++.|+... + ...|+- ....||||.+ +|.+++++++.+.|++.| T Consensus 164 G~AQrr~~~~~l~hgtllv~~d~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~~~vtsL~~~lg~~~t~eev~~~l~~~~ 242 (288) T 2p0l_A 164 GLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNV-DPEIMANLSDLLDCPMTVEDVIDRMLISL 242 (288) T ss_dssp EEEEEEETTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCC-CTTSBCCHHHHTTCCCCHHHHHHHHHHHH T ss_pred EEEEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHEEEHHHHCCCCCCHHHHHHHHHHHH T ss_conf 98899989989999999985788999999877777411443343357875-52002459997299999999999999999 Q ss_pred HHHHC Q ss_conf 98746 Q gi|254780177|r 231 ESVFG 235 (257) Q Consensus 231 ~~~Fg 235 (257) .+.++ T Consensus 243 ~~~~~ 247 (288) T 2p0l_A 243 KQVGF 247 (288) T ss_dssp HHHTC T ss_pred HHHCC T ss_conf 98657 No 6 >3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Probab=99.79 E-value=2.6e-17 Score=131.53 Aligned_cols=201 Identities=17% Similarity=0.231 Sum_probs=154.6 Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-----HCCCCCCEEEEECCCCEEEE Q ss_conf 2389980888588999999999999997399787899980687377434788556-----10547824998056670786 Q gi|254780177|r 21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-----LLSPKSLPVYTTGRGGGYTY 95 (257) Q Consensus 21 ~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-----ll~~~~ipv~~t~RGG~iTy 95 (257) .++..++...=|| .-+++.+.+.++.. ....+|.+-+++|++++|++.+... .+...++|+++-..||+.+| T Consensus 2 ~~r~i~s~s~dp~-~NlA~ee~Ll~~~~--~~~~~l~~w~~~p~v~iG~~Q~~~~ev~~~~~~~~gi~vvRR~sGGGaV~ 78 (337) T 3a7r_A 2 TLRLLISDSYDPW-FNLAVEECIFRQMP--ATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVF 78 (337) T ss_dssp CEEEEEECCCCHH-HHHHHHHHHHHHCC--TTCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEE T ss_pred CEEEEECCCCCHH-HHHHHHHHHHHCCC--CCCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEE T ss_conf 5899985899999-99999999995278--89968999716998998999986776588999865996899827972599 Q ss_pred ECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECC Q ss_conf 07892477765121001203899999999999999886288532458872167416676665556564210100000004 Q gi|254780177|r 96 HGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIR 175 (257) Q Consensus 96 HGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~ 175 (257) |+|||+..++|.+.... + -..+.+.++++|+.+||++... ++..++++.. .+.+||+..+.+.. T Consensus 79 hd~g~l~~s~i~~~~~~--~----~~~~~~~i~~aL~~lGi~a~~~-~r~di~~~~~---------~~gkKIsGsAq~~~ 142 (337) T 3a7r_A 79 HDLGNTCFTFMAGKPEY--D----KTISTSIVLNALNALGVSAEAS-GRNDLVVKTV---------EGDRKVSGSAYRET 142 (337) T ss_dssp ECTTEEEEEEEEETTTC--C----HHHHHHHHHHHHHHTTCCEEEE-TTTEEEECCT---------TSCEEEEEEEEEEC T ss_pred ECCCCEEEEEEECCCCC--C----HHHHHHHHHHHHHHHCCCEEEC-CCCCCEECCC---------CCCEEEEEEEEEEE T ss_conf 78998799998567510--7----8999999999999819753777-8776200367---------89818998749999 Q ss_pred CCEEEEEEEEEECCCCHHHC---CEEECCCCC-------CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHC Q ss_conf 88899889999549913517---341056797-------852128991898899999999999999874611102 Q gi|254780177|r 176 KWISFHGLSLNISPDLSYYT---GIVPCGISQ-------HGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILH 240 (257) Q Consensus 176 ~~vT~HG~alNv~~dL~~F~---~IvPCGl~~-------~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~ 240 (257) ++..+|+.+|.++.|++.+. ...+|++.+ ..||+|.+++.+++++++.+.+++.|.+.||..+.. T Consensus 143 ~~~~l~hgtll~d~d~~~l~~~L~~~~~k~~~k~~~Sv~~rVtnL~e~~~~~~~e~~~~~l~~~f~~~~~~~~~~ 217 (337) T 3a7r_A 143 KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERVEA 217 (337) T ss_dssp SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHTCCCCC T ss_pred CCEEEEEEEEECCCCHHHHHHHCCCCCHHHHHCCCCCHHHCCEEHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE T ss_conf 999999868632799899998619992212440567446243449994799999999999999999984655635 No 7 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3 Probab=99.76 E-value=8.6e-17 Score=128.18 Aligned_cols=199 Identities=14% Similarity=0.135 Sum_probs=152.9 Q ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEE Q ss_conf 9723899808885889999999999999973997878999806873774347885561-----05478249980566707 Q gi|254780177|r 19 ISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGY 93 (257) Q Consensus 19 ~~~ie~~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~i 93 (257) ...+++..+...=||. -+++-+.+.+... ..+.+++|-+++|++++|++.+.... +...++|+++-..||+. T Consensus 10 ~~~m~~i~~~s~dp~~-NlAlee~L~~~~~--~~~~~l~lw~n~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGa 86 (341) T 1vqz_A 10 HHHMKYIINHSNDTAF-NIALEEYAFKHLL--DEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGA 86 (341) T ss_dssp --CEEEEECCCCCHHH-HHHHHHHHHHHCT--TCSEEEEEECCSSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCC T ss_pred CCEEEEEECCCCCHHH-HHHHHHHHHHHCC--CCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCE T ss_conf 5537999779999889-8999999996078--899889998169989989889837766889998769939998289974 Q ss_pred EEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEE Q ss_conf 86078924777651210012038999999999999998862885324588721674166766655565642101000000 Q gi|254780177|r 94 TYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR 173 (257) Q Consensus 94 TyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~ 173 (257) +||+|||+...+|++.... .....+.+.++++++|+.+||++... ++-.+||++ +||+..+.+ T Consensus 87 VyhD~g~l~~s~i~~~~~~---~~~~y~~~~~~ii~aL~~lGi~a~~~-~rnDi~v~g-------------~KIsG~A~~ 149 (341) T 1vqz_A 87 VYHDLNNLNYTIISKEDEN---KAFDFKSFSTPVINTLAQLGVKAEFT-GRNDLEIDG-------------KKFCGNAQA 149 (341) T ss_dssp EEECTTEEEEEEEEECCTT---CCCSHHHHHHHHHHHHHHTTCCEEEE-TTTEEEETT-------------EEEEEEEEE T ss_pred EEECCCCEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCEECC-------------EEEEEEEEE T ss_conf 9989996799999737665---22119999999999999739763772-468824888-------------686435679 Q ss_pred CCCCEEEEEEEEEECCCCHHHCCEE---ECCCCC-------CCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHCHH Q ss_conf 0488899889999549913517341---056797-------85212899-1898899999999999999874611 Q gi|254780177|r 174 IRKWISFHGLSLNISPDLSYYTGIV---PCGISQ-------HGVTSLKE-LGYSYSMKYIDTLIRKSFESVFGPT 237 (257) Q Consensus 174 i~~~vT~HG~alNv~~dL~~F~~Iv---PCGl~~-------~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257) ..++..+|+.+|.++.|++.+.... ++++.+ ..||+|.+ ++.+++++++.+.|.+.|.+.|+.. T Consensus 150 ~~~~~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~~l~~~~~~e~~~~~l~~~f~~~~~~~ 224 (341) T 1vqz_A 150 YINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEM 224 (341) T ss_dssp EETTEEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTC T ss_pred EECCEEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 858868994200037899999988389940202305642265523089775999999999999999999973888 No 8 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Probab=99.72 E-value=9.1e-16 Score=121.55 Aligned_cols=190 Identities=13% Similarity=0.141 Sum_probs=146.2 Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHH-----HCCCCCCEEEEECCCCEEEEECCCCEEEEEE Q ss_conf 88999999999999997399787899980687377434788556-----1054782499805667078607892477765 Q gi|254780177|r 32 DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD-----LLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106 (257) Q Consensus 32 ~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~d-----ll~~~~ipv~~t~RGG~iTyHGPGQlV~Ypi 106 (257) |=..-+++-+.+.... ......++.|-++.|++++|++.+... .+...++|+++-.-||+..||+|||+...+| T Consensus 14 dp~~NlA~ee~ll~~~-~~~~~~~l~lw~~~p~vviG~~Q~~~~Evn~~~~~~~gi~vvRR~tGGGaVyhD~G~l~~s~i 92 (347) T 2e5a_A 14 DVYHNLAVEDWIHDHM-NLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHDMGNINLTFF 92 (347) T ss_dssp CHHHHHHHHHHHHHHC-CCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEECTTEEEEEEE T ss_pred CHHHHHHHHHHHHHHC-CCCCCCEEEEEECCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCCCEEEEEE T ss_conf 9888899999999606-789996899970799899899988056639999987699489982698349953995899999 Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEEEEEEEE Q ss_conf 12100120389999999999999988628853245887216741667666555656421010000000488899889999 Q gi|254780177|r 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLN 186 (257) Q Consensus 107 i~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~HG~alN 186 (257) ++.. ..+.+.+...+.+++..++..+++++. ++-.++|++ .+||+..+.+..++..+|..+|. T Consensus 93 ~~~~--~~~~~~~~~~i~~al~~~~~~l~~~~~---~rnDi~v~g------------~~KisG~Aq~~~~~~~l~hGTll 155 (347) T 2e5a_A 93 TTKK--KYDRMENLKLVVRALKAVHPHLDVQAT---KRFDLLLDG------------QFKISGTASKIGRNAAYHHCTLL 155 (347) T ss_dssp ECGG--GCCHHHHHHHHHHHHHHHSTTCCEEEC---TTSCEEETT------------TEEEECEEEEECSSCEEEEEEEE T ss_pred ECCC--CCCHHHHHHHHHHHHHHHHHHCCEEEC---CCCCEEECC------------CCEEEEEEEEEECCEEEEEEEEE T ss_conf 6377--789999999999999998764664770---577638548------------82899889998789899986898 Q ss_pred ECCCCHHH---CCEEECCCCC-------CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCHHHH Q ss_conf 54991351---7341056797-------85212899189889999999999999987461110 Q gi|254780177|r 187 ISPDLSYY---TGIVPCGISQ-------HGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTIL 239 (257) Q Consensus 187 v~~dL~~F---~~IvPCGl~~-------~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~ 239 (257) ++.|++.. -.+.|+++.+ ..||+|.+++.+++++++.+.+.+.|.+.|+.... T Consensus 156 ~d~d~~~l~~~L~~~~~kl~~kgv~Sv~srV~nL~e~~~~~~~e~~~~al~~~f~~~~~~~~~ 218 (347) T 2e5a_A 156 CGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNH 218 (347) T ss_dssp SSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHTCCCC T ss_pred ECCCHHHHHHHHCCCHHHHHHHCCCCCHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 438889999871898367565300342642405899589999999999999999998488762 No 9 >2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Probab=97.03 E-value=0.015 Score=35.77 Aligned_cols=122 Identities=22% Similarity=0.221 Sum_probs=80.5 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCCC Q ss_conf 66707860789247776512100120389999999999999988628853245-88721674166766655565642101 Q gi|254780177|r 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEKI 167 (257) Q Consensus 89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~KI 167 (257) |.|..=+.-||.|.+-.+++..........+.-..--++.+++..++++...+ |. -|++ .++|| T Consensus 48 R~gr~W~sp~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~iKWPN--Di~~-------------~~kKl 112 (235) T 2dxu_A 48 ALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKWPN--DVLV-------------NYKKI 112 (235) T ss_dssp GGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHHHHHHHHHHHTTCCCEEETTT--EEEE-------------TTEEE T ss_pred CCCCEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC--HHEE-------------CCCEE T ss_conf 89984467999707986502457677899999999999876555217751587684--0210-------------56411 Q ss_pred EEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCHH Q ss_conf 00000004888998899995499135173410567978521289-91898899999999999999874611 Q gi|254780177|r 168 AAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPT 237 (257) Q Consensus 168 asIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~~ 237 (257) |-|=+.-+.....=|+.||++.++ | ...||+. +++..++.+++-..+..+|.+.+..- T Consensus 113 ~GIL~E~~~~~~viGiGiNl~~~~-------~-----~~~tsl~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 171 (235) T 2dxu_A 113 AGVLVEGKGDKIVLGIGLNVNNKV-------P-----NGATSMKLELGSEVPLLSVFRSLITNLDRLYLNF 171 (235) T ss_dssp EEEEEEECSSCEEEEEEECSSSCC-------C-----TTBCCHHHHHTSCCCHHHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEECCEEEEEEEEECCCCC-------C-----CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH T ss_conf 366554204569999977658779-------9-----6341199886204686899999999999999999 No 10 >2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Probab=94.02 E-value=0.35 Score=26.92 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=75.8 Q ss_pred CCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCC-CCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 5667078607892477765121001203899999999999999886288-53245-887216741667666555656421 Q gi|254780177|r 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGI-VGERR-EDRVGIWVVRLNKTRDNQLLLIEE 165 (257) Q Consensus 88 ~RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI-~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~ 165 (257) +|.|..=+.-||.|.+-.+++..... ....+--..--++.++|..++- +...+ |. .|++ ..+ T Consensus 39 GR~gr~W~s~~g~l~~S~~~~~~~~~-~~~~l~~~~~lai~~~l~~~~~~~v~iKWPN--DI~~-------------~~k 102 (233) T 2eay_A 39 GRLGRKWLSQEGGLYFSFLLNPKEFE-NLLQLPLVLGLSVSEALEEITEIPFSLKWPN--DVYF-------------QEK 102 (233) T ss_dssp ----------CCEEEEEEEECTTTCC-CTTHHHHHHHHHHHHHHHHHHCCCCEEETTT--EEEE-------------TTE T ss_pred CCCCCEEECCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCCEECCC--HHEE-------------CCC T ss_conf 98998611899984563122642123-3678999999999987877456664061784--5236-------------788 Q ss_pred CCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 01000000048889988999954991351734105679785212899-18988999999999999998746 Q gi|254780177|r 166 KIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 166 KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg 235 (257) |+|-|=+.....-..=|+.+|++..- .|-.+. ..+|||.+ .+..++.+++-..+..+|.+.+. T Consensus 103 Ki~GIL~E~~~~~~viGiGin~~~~~------~~~~~~-~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~ 166 (233) T 2eay_A 103 KVSGVLCELSKDKLIVGIGINVNQRE------IPEEIK-DRATTLYEITGKDWDRKEVLLKVLKRISENLK 166 (233) T ss_dssp EEEEEEEEEETTEEEEEEEEECSCCC------CCTTTT-TTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEECEEEEEEEEEEEEEECCC------CCCHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 62344000103579999999860676------761134-44337888648865789999999999999999 No 11 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Probab=93.96 E-value=0.36 Score=26.84 Aligned_cols=127 Identities=15% Similarity=0.251 Sum_probs=71.8 Q ss_pred CCCEEEEECC-CC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 6670786078-92-477765121001203899999999999999886288532458872167416676665556564210 Q gi|254780177|r 89 RGGGYTYHGP-GQ-RIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166 (257) Q Consensus 89 RGG~iTyHGP-GQ-lV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~K 166 (257) |.|. +|+-| |. |-+-.++........+..+--..--++.++|..++......+=-=-|++ .++| T Consensus 118 R~GR-~W~Sp~g~~l~~S~~l~~~~~~~~~~~lsl~~~~av~~al~~~~~~~v~iKWPNDI~~-------------~~kK 183 (321) T 1bia_A 118 RRGR-KWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEVLRKLGADKVRVKWPNDLYL-------------QDRK 183 (321) T ss_dssp --------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHHHHHHHHHTTCTTCEEETTTEEEE-------------TTEE T ss_pred CCCC-EEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH-------------CCCC T ss_conf 9989-7068999988999982675364466888999999999999983665167636973300-------------1101 Q ss_pred CEEHHEECC---CCEE--EEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 100000004---8889--98899995499135173410567978521289918988999999999999998746 Q gi|254780177|r 167 IAAIGIRIR---KWIS--FHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 167 IasIGi~i~---~~vT--~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~Fg 235 (257) ||-|=+-.. ..+. .=|+.+|++. ..| |-.+.+...+++.+.+..++.+++-..+.++|...+. T Consensus 184 i~GIL~E~~~~~~~~~~~viGiGiN~~~--~~~----~~~~~~~~~s~~~~~~~~~~r~~l~~~ll~~l~~~~~ 251 (321) T 1bia_A 184 LAGILVELTGKTGDAAQIVIGAGINMAM--RRV----EESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALE 251 (321) T ss_dssp EEEEEEEEEC----CEEEEEEEEEECCC-----------------CCCTTTTTCCCCHHHHHHHHHHHHHHHHH T ss_pred HHEEEEEEEECCCCEEEEEEEECCCCCC--CCC----CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 1234333220355203799997653356--778----5331013457787627654767799999999999999 No 12 >2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A Probab=93.37 E-value=0.45 Score=26.19 Aligned_cols=127 Identities=15% Similarity=0.123 Sum_probs=69.5 Q ss_pred CCCEEEEEC-CCC-EEEEEEECCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC Q ss_conf 667078607-892-47776512100120389999999-999999988628853245887216741667666555656421 Q gi|254780177|r 89 RGGGYTYHG-PGQ-RIIYIMLNLAKRRKDLRCFVAAL-EEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEE 165 (257) Q Consensus 89 RGG~iTyHG-PGQ-lV~Ypii~L~~~~~~v~~yv~~l-E~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~ 165 (257) |.|. +|+. ||. |.+-..+.....+.....++..+ --++.++++.+--. ....+.++=+|+ ....++ T Consensus 71 R~gr-~W~Sp~g~~l~~S~~~~~~~~~~~~~~~lsl~~~lav~~al~~l~~~-----~~~~~~iKWPND-----i~~~~k 139 (268) T 2cgh_A 71 RHGR-GWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAV-----PPAETGLKWPND-----VLARGG 139 (268) T ss_dssp ---------CTTSEEEEEEEEECTTSCGGGTTHHHHHHHHHHHHHHGGGSSS-----CGGGEEEETTTE-----EEETTE T ss_pred CCCC-CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCEEEECCCH-----HHHHCC T ss_conf 5998-31479999389987735677646677788999999999877775148-----765158846825-----654301 Q ss_pred CCEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHHH-CCCCCHHHHHHHHHHHHHHHHC Q ss_conf 010000000488899889999549913517341056797852128991-8988999999999999998746 Q gi|254780177|r 166 KIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKEL-GYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 166 KIasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~l-g~~i~~~ev~~~l~~~f~~~Fg 235 (257) |||-|=+....-..-=|+.||++..- ..+ +...|||.++ +..++.+++-..+.++|...+. T Consensus 140 Kl~GIL~E~~~~~vvIGIGINv~~~p--------~~~-~~~~tsL~~~~~~~~~~~~l~~~l~~~l~~~~~ 201 (268) T 2cgh_A 140 KLAGILAEVAQPFVVLGVGLNVTQAP--------EEV-DPDATSLLDLGVAAPDRNRIASRLLRELEARII 201 (268) T ss_dssp EEEEEEEEEETTEEEEEEEEESCCC-----------------CCTGGGTCSSCCHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEECCEEEEEEEEECCCCC--------HHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 12898777302448999988576585--------355-431001555445435788999999999999999 No 13 >2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Probab=92.68 E-value=0.56 Score=25.55 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=72.3 Q ss_pred CCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CCCCEEEECCCCCCCCCCCCCCCCC Q ss_conf 6670786078924777651210012038999999999999998862-8853245-8872167416676665556564210 Q gi|254780177|r 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL-GIVGERR-EDRVGIWVVRLNKTRDNQLLLIEEK 166 (257) Q Consensus 89 RGG~iTyHGPGQlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~-gI~~~~~-~~~~GVWV~~~~~~~~~~~~~~~~K 166 (257) |.|..=+--||.+.+-.+++.+... ...+--..--++.+++..+ +++...+ |. -||++.+ ...+| T Consensus 40 R~gr~W~Sp~g~l~~S~~~~~~~~~--~~~l~l~~~~ai~~~l~~~~~~~~~lKWPN--Di~~~~~---------~~~kK 106 (237) T 2ej9_A 40 RWGRVWYSDEGGLYFSMVLDSKLYN--PKVINLLVPICIIEVLKNYVDKELGLKFPN--DIMVKVN---------DNYKK 106 (237) T ss_dssp GGGCBCCCCTTSEEEEEEEETTSSC--HHHHHHHHHHHHHHHHTTTCCSCEEEETTT--EEEEEET---------TEEEE T ss_pred CCCCEEECCCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHCCCCCEEECCC--CEEEEEC---------CCCCE T ss_conf 8998617899984344414324468--556236778998887765314440330466--3798505---------78866 Q ss_pred CEEHHEECCCCEEEEEEEEEECCCCHHHCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 1000000048889988999954991351734105679785212899-18988999999999999998746 Q gi|254780177|r 167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 167 IasIGi~i~~~vT~HG~alNv~~dL~~F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg 235 (257) ||-|=+-.......=|+.||++.+... .....+|||.+ .|..++.+++-..+.++|...+. T Consensus 107 i~GIL~E~~~~~~viGiGINvn~~~~~--------~~~~~atsL~~~~~~~~~~~~l~~~l~~~l~~~~~ 168 (237) T 2ej9_A 107 LGGILTELTDDYMIIGIGINVNNQIRN--------EIREIAISLKEITGKELDKVEILSNFLKTFESYLE 168 (237) T ss_dssp EEEEEEEECSSEEEEEEEECSSSCCCG--------GGGGTBCCHHHHHSSCCCHHHHHHHHHHHHHHHHH T ss_pred EEEEEEEECCCEEEEEEEEECCCCCCC--------CCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999986304770799999962677872--------01355455887538767999999999999999999 No 14 >3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} Probab=83.89 E-value=2.3 Score=21.59 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=53.7 Q ss_pred HHHHHHHHHCC---CCCC-CCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEEC-------CCCEEEEEEEEEECCCCHH Q ss_conf 99999988628---8532-45887216741667666555656421010000000-------4888998899995499135 Q gi|254780177|r 125 EVIIRTLKILG---IVGE-RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI-------RKWISFHGLSLNISPDLSY 193 (257) Q Consensus 125 ~~ii~~l~~~g---I~~~-~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i-------~~~vT~HG~alNv~~dL~~ 193 (257) -++.++|..++ ++.. ..|. =||++ .+|+|-|=+.. +...--=|+.||++.+- T Consensus 73 vAv~~al~~~~~~~v~v~lKWPN--DIli~-------------gkKl~GILiE~~~~~~~~~~~~vviGiGiNv~~~~-- 135 (235) T 3bfm_A 73 VGFQNALGALAPPEVAVHLDWNG--ALRIN-------------GARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEG-- 135 (235) T ss_dssp HHHHHHHHHHSCTTCCEEECTTS--EEEET-------------TEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCC-- T ss_pred HHHHHHHHHHCCCCCEEEEECCC--CEEEC-------------CCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCC-- T ss_conf 99999999866977415862798--35977-------------86310688862136776655389999775047787-- Q ss_pred HCCEEECCCCCCCCCCHHH-HCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 1734105679785212899-18988999999999999998746 Q gi|254780177|r 194 YTGIVPCGISQHGVTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235 (257) Q Consensus 194 F~~IvPCGl~~~~vTSl~~-lg~~i~~~ev~~~l~~~f~~~Fg 235 (257) +.. .....|||.+ .+..++.+++-..+.++|...+. T Consensus 136 ~~~------~~~~~tsL~~~~~~~~~~~~ll~~l~~~l~~~~~ 172 (235) T 3bfm_A 136 DGG------ETPDETALYAEGCADVAAPRLLESWARHCLHWIN 172 (235) T ss_dssp SSC------CCCCSCCGGGTTCTTCCHHHHHHHHHHHHHHHHH T ss_pred CCC------CCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf 654------4454265778529999999999999999999755 No 15 >2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} SCOP: d.104.1.4 Probab=62.59 E-value=7.9 Score=18.10 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEEE-EEEEEEECCCCHHHCC Q ss_conf 999999999999988628853245887216741667666555656421010000000488899-8899995499135173 Q gi|254780177|r 118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF-HGLSLNISPDLSYYTG 196 (257) Q Consensus 118 ~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT~-HG~alNv~~dL~~F~~ 196 (257) .+-|.|-..+-..|.++|++..|.-+ -+||++ |=.|+-|+...-+|. =-++|||...- T Consensus 86 ~rQRLl~~i~~e~L~~~g~~~~r~GD--DLyv~~--------------~KlSVSIAt~s~vS~kIH~GINV~~~g----- 144 (190) T 2ddz_A 86 SLQKLLIARLVELLWNYGIEASRRGD--DIYVNG--------------RKLSISIATVSPVSIKIHIGLNVKTVG----- 144 (190) T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEETT--EEEETT--------------EECEEEEEEECSSCEEEEEEEESCCSS----- T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCC--EEEECC--------------CEEEEEEEECCCCCEEEEEEEEEECCC----- T ss_conf 99999999999999975986176278--578869--------------778999996078725899878875167----- Q ss_pred EEECCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 41056797852128991898899999999999999874 Q gi|254780177|r 197 IVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 (257) Q Consensus 197 IvPCGl~~~~vTSl~~lg~~i~~~ev~~~l~~~f~~~F 234 (257) +| ++....||.++|. +..++.+.+...|.+.+ T Consensus 145 -~P---~~v~a~~L~d~g~--d~~~~m~~i~~~y~~E~ 176 (190) T 2ddz_A 145 -VP---PGVDAIGLEELGI--DPTEFMERSAKALVEEI 176 (190) T ss_dssp -CC---SSSCBCCHHHHTC--CHHHHHHHHHHHHHHHH T ss_pred -CC---CCCCEECHHHCCC--CHHHHHHHHHHHHHHHH T ss_conf -47---8740403654277--89999999999999999 No 16 >3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth factor, FGF-2 regulation; 2.30A {Homo sapiens} Probab=35.74 E-value=21 Score=15.35 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=42.9 Q ss_pred EECCCCEEEEECCCCEEEEEEECCCC----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCC Q ss_conf 80566707860789247776512100----12038999999999999998862885324588721674166766655565 Q gi|254780177|r 86 TTGRGGGYTYHGPGQRIIYIMLNLAK----RRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL 161 (257) Q Consensus 86 ~t~RGG~iTyHGPGQlV~Ypii~L~~----~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~ 161 (257) ..||=|+|| +|+.+ ...|...|...|.+++..- +.+++.|||+.= T Consensus 28 ~~DrygGV~------------Vd~~~l~~~~~~d~~~F~~~L~~Sl~~W---------r~~gkr~VWlkl---------- 76 (113) T 3fxt_A 28 ELDRFGGIS------------VRLARLDALDRLDAAAFQKGLQAAVQQW---------RSEGRTAVWLHI---------- 76 (113) T ss_dssp EECTTSCEE------------EEHHHHTTTSCBCHHHHHHHHHHHHHHH---------HHTTCCEEEEEE---------- T ss_pred CCCCCCCEE------------ECCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHCCCEEEEEEE---------- T ss_conf 503679999------------8465467756479999999999999999---------986985899982---------- Q ss_pred CCCCCCEEHHEECCCCEEEEEE Q ss_conf 6421010000000488899889 Q gi|254780177|r 162 LIEEKIAAIGIRIRKWISFHGL 183 (257) Q Consensus 162 ~~~~KIasIGi~i~~~vT~HG~ 183 (257) +-.+-.-|-+.++.+..||=. T Consensus 77 -pi~~s~lIp~a~~~GF~fHHA 97 (113) T 3fxt_A 77 -PILQSRFIAPAASLGFCFHHA 97 (113) T ss_dssp -EGGGGGGHHHHHHTTCEEEEE T ss_pred -CHHHHHHHHHHHHCCCEEECC T ss_conf -889976789999769614658 No 17 >1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1 Probab=30.30 E-value=24 Score=14.95 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.5 Q ss_pred HCCEEECCCCCCCCCCHH-HHCCCCCHHHHHHHHHHHHHHHHCH Q ss_conf 173410567978521289-9189889999999999999987461 Q gi|254780177|r 194 YTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGP 236 (257) Q Consensus 194 F~~IvPCGl~~~~vTSl~-~lg~~i~~~ev~~~l~~~f~~~Fg~ 236 (257) -++++|||.+=...+.|- .+-..+. ...+.++.+.|...|.+ T Consensus 13 ~~~~~~~~~PY~s~~dLP~sVr~~LP-~hAQ~Iy~kafNsA~e~ 55 (96) T 1sg7_A 13 SSGFNPRGSPYKTKSDLPESVKHVLP-SHAQDIYKEAFNSAWDQ 55 (96) T ss_dssp ---------CCSSSTTSCHHHHTTCC-SHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCHHHCCHHHHHHCC-HHHHHHHHHHHHHHHHH T ss_conf 46779999997695568699998688-99999999999999998 No 18 >3lr0_A Sensor protein; niaid, seattle structural genomics center for infectious DIS ssgcid, PH, RISS, iodide phased, burkholder melioidosis; 1.90A {Burkholderia pseudomallei} PDB: 3lr3_A 3lr5_A 3lr4_A Probab=21.03 E-value=38 Score=13.68 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE Q ss_conf 9999999999998862885324588721674 Q gi|254780177|r 119 FVAALEEVIIRTLKILGIVGERREDRVGIWV 149 (257) Q Consensus 119 yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV 149 (257) |.+.+++-+..-|..=-+-+....+.||+|| T Consensus 90 ~~~~v~~el~~rLG~~TiVA~~vn~~pGlWV 120 (143) T 3lr0_A 90 VNRLIEHDIRSRLGDDTVIAQSVNDIPGVWI 120 (143) T ss_dssp THHHHHHHHHHHHCTTCCEEEEETTEEEEEE T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEE T ss_conf 9999999999865999889765679675689 Done!