HHSEARCH alignment of GI: 254780177 and SCOP domain: d2c8ma1

Alignment

Probab=99.92  E-value=5.9e-24  Score=173.15  Aligned_cols=208  Identities=14%  Similarity=0.217  Sum_probs=164.6

Q ss_pred             EEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCHHHH-----CCCCCCEEEEECCCCEEEEECCC
Q ss_conf             9808885889999999999999973997878999806873774347885561-----05478249980566707860789
Q gi|254780177|r   25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDL-----LSPKSLPVYTTGRGGGYTYHGPG   99 (257)
Q Consensus        25 ~~~~G~v~Y~~al~~q~~~~~~v~~~~~~d~l~llEH~pVyT~G~~~~~~dl-----l~~~~ipv~~t~RGG~iTyHGPG   99 (257)
                      .+..++-+....+++-+.+.+....+. ..++.+.+|.|.+++|++.+..+.     +...++||++-.+||+++||+||
T Consensus         6 ~~~~~~~~~~~nmA~de~Ll~~~~~~~-~p~lr~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvRR~tGGgaV~hd~g   84 (256)
T d2c8ma1           6 LLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLG   84 (256)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHCCTTS-CCEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTT
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCC
T ss_conf             996399998999999999997343799-9789997589969988889801441989998679958997069862897899


Q ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEHHEECCCCEE
Q ss_conf             24777651210012038999999999999998862885324588721674166766655565642101000000048889
Q gi|254780177|r  100 QRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS  179 (257)
Q Consensus       100 QlV~Ypii~L~~~~~~v~~yv~~lE~~ii~~l~~~gI~~~~~~~~~GVWV~~~~~~~~~~~~~~~~KIasIGi~i~~~vT  179 (257)
                      |++.|+|++..  ..++..+.+.+.++++++|+.+||+++..+ ..++++..+.   ..+.....+||+..+.+.+++..
T Consensus        85 ~l~~s~i~~~~--~~~~~~~y~~~~~~i~~~l~~lGi~a~~~~-~~~~~~~~~~---~~di~~~~~Ki~G~a~~~~~~~~  158 (256)
T d2c8ma1          85 DLNFSVVRSSD--DMDITSMFRTMNEAVVNSLRILGLDARPGE-LNDVSIPVNK---KTDIMAGEKKIMGAAGAMRKGAK  158 (256)
T ss_dssp             EEEEEEEEECS--SCCHHHHHHHHHHHHHHHHHHTTCCCEECC-BCCTTSSSSB---TTSEEETTEEEEEEEEEEETTEE
T ss_pred             CEEEEEEECCC--CCCHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCEEEEECC---CCCCCCCCCEECCCCCCCCCCEE
T ss_conf             84999997158--999999999999999998765280378868-5870898204---77654554334032222135179


Q ss_pred             EEEEEEEECCCCHHH---CCEEECCCCCCCCCCH-------HHHCCCCCHHHHHHHHHHHHHHHHCHHHHC
Q ss_conf             988999954991351---7341056797852128-------991898899999999999999874611102
Q gi|254780177|r  180 FHGLSLNISPDLSYY---TGIVPCGISQHGVTSL-------KELGYSYSMKYIDTLIRKSFESVFGPTILH  240 (257)
Q Consensus       180 ~HG~alNv~~dL~~F---~~IvPCGl~~~~vTSl-------~~lg~~i~~~ev~~~l~~~f~~~Fg~~~~~  240 (257)
                      +|+.+|++++|++.+   -.+.||++.+..++|+       .++ .+++++++.+.|++.|.+.|+..+..
T Consensus       159 l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~-~~~~~e~~~~~l~~~f~~~~~~~~~~  228 (256)
T d2c8ma1         159 LWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSETLHIDFRE  228 (256)
T ss_dssp             EEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99867403799999998758895010320355447533048762-89899999999999999985897612

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]