RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(257 letters)
>gnl|CDD|30669 COG0321, LipB, Lipoate-protein ligase B [Coenzyme metabolism].
Length = 221
Score = 245 bits (628), Expect = 6e-66
Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 13/232 (5%)
Query: 14 FPMENISP-IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72
P I VDY+E+ +ME + G + +WL+EHPP+YT+G +
Sbjct: 1 QRSPRSKPKIILVRELGLVDYQEAWQLMETFTDARADGGTPDEIWLVEHPPVYTAGQAGK 60
Query: 73 SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLK 132
++ LL P +PV T RGG TYHGPGQ + Y +L+L + + D+R +V ALE+ +I TL
Sbjct: 61 AEHLLMPDDIPVVQTDRGGQVTYHGPGQLVAYPILDLKRPKLDVREYVRALEQAVINTLA 120
Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS 192
GI ERR DR G+WV E KIAAIGIRIR+ ++FHGL+LN++ DLS
Sbjct: 121 EYGIEAERRPDRPGVWVEE------------ERKIAAIGIRIRRGVTFHGLALNVNMDLS 168
Query: 193 YYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGPTILHEYAN 244
+ IVPCG + VTSL +LG ++ + + +F + GP ++
Sbjct: 169 PFNRIVPCGYAGMEVTSLSDLGPPVTVDEVAKALVAAFAKLLGPKLIVAELT 220
>gnl|CDD|35546 KOG0325, KOG0325, KOG0325, Lipoyltransferase [Energy production and
conversion, Coenzyme transport and metabolism].
Length = 226
Score = 115 bits (289), Expect = 1e-26
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 35 ESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGT---SAISDDLLSPKSLP--VYTTGR 89
+++++ +I + S + + EH P+YT G D L + T R
Sbjct: 24 QNRLVRSVKILKKSGTHPIPRILTNEHLPVYTYGCRTLDFTLYDESRLYKLGAEFHKTER 83
Query: 90 GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149
GG T+HGPGQ + Y +++L RC+V+ LE GI G G+WV
Sbjct: 84 GGLITFHGPGQLVAYPIIDLRHFGFSARCYVSTLEA----ACPDFGIKGTASTKDTGVWV 139
Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTS 209
+ KIAAIGIR+ + I++HGL+LN++ DL+Y+ IVPCGI GVTS
Sbjct: 140 G-------------DAKIAAIGIRVSREITYHGLALNVNTDLTYFNHIVPCGIYGRGVTS 186
Query: 210 LKE 212
+ +
Sbjct: 187 ISK 189
>gnl|CDD|145963 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family.
This family includes biotin protein ligase,
lipoate-protein ligase A and B. Biotin is covalently
attached at the active site of certain enzymes that
transfer carbon dioxide from bicarbonate to organic
acids to form cellular metabolites. Biotin protein
ligase (BPL) is the enzyme responsible for attaching
biotin to a specific lysine at the active site of biotin
enzymes. Each organism probably has only one BPL. Biotin
attachment is a two step reaction that results in the
formation of an amide linkage between the carboxyl group
of biotin and the epsilon-amino group of the modified
lysine. Lipoate-protein ligase A (LPLA) catalyses the
formation of an amide linkage between lipoic acid and a
specific lysine residue in lipoate dependent enzymes.
The unusual biosynthesis pathway of lipoic acid is
mechanistically intertwined with attachment of the
cofactor.
Length = 124
Score = 62.4 bits (152), Expect = 1e-10
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRR----KDLRCFVAALEEVIIRTLKILGIV 137
+ V GG +H PG + Y +L L + + DL +V L ++ L
Sbjct: 22 VVVARRQTGGRRVWHSPGGNLAYSLLLLPELKSFKPSDLPAYVLLLVLAVLEALGP---- 77
Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190
+ GIWV K N +L+ +KIA I IR+ + H +L I +
Sbjct: 78 ---KAGIPGIWVR--IKWP-NDVLVNGKKIAGILQEIRRGGTLHHGTLGIGIN 124
>gnl|CDD|30444 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].
Length = 248
Score = 30.7 bits (69), Expect = 0.46
Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 22/158 (13%)
Query: 90 GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149
GGG +H G ++ + L + +I L+ LG+ G R
Sbjct: 74 GGGAVFHDLGNLNYSVITPDEGGLESYETLYKFLLQPVIDALRALGVEGAECPGR----- 128
Query: 150 VRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHG--LSLNISPDLSYYTGIVPCG-ISQHG 206
N L++ +KI+ R K H L L+I +L VP I G
Sbjct: 129 --------NDLVVDGKKISGSAQRRTKGRILHHGTLLLDIDLELLARVLRVPKEKIKSKG 180
Query: 207 VTSLKE------LGYSYSMKYIDTLIRKSFESVFGPTI 238
+ S++E S++ + ++F V G +
Sbjct: 181 IKSVRERVANLEELLKISVEEFLEALLEAFFKVLGVEL 218
>gnl|CDD|147095 pfam04765, DUF616, Protein of unknown function (DUF616). Family of
uncharacterized proteins.
Length = 306
Score = 30.0 bits (68), Expect = 0.70
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 108 NLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIW 148
+++R K CFV ++E + TLK G V + RVG+W
Sbjct: 84 GISERSKKNVCFVMFVDEETLSTLKSEGSVVD-GNGRVGLW 123
>gnl|CDD|36383 KOG1168, KOG1168, KOG1168, Transcription factor ACJ6/BRN-3,
contains POU and HOX domains [Transcription].
Length = 385
Score = 28.5 bits (63), Expect = 2.0
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 157 DNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYT-GIVPC 200
D LL E +AA+ I + HG PD +Y+T + PC
Sbjct: 63 DESLLARAEALAAVDIPKSQGKQHHGDPPPFKPDATYHTMSVPPC 107
>gnl|CDD|30602 COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and
metabolism].
Length = 272
Score = 26.8 bits (59), Expect = 5.7
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 16 MENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDD 75
E V V +++ + + N EEL LLE L+ G +
Sbjct: 136 EEQYGLGEETVTFYAVSMGNPHLVIF--VDDVETANLEELGPLLESHELFPEGVNVGFVQ 193
Query: 76 LLSPKSLPVYTTGRGGGYT 94
+LS ++ + RG G T
Sbjct: 194 VLSRDAIRLRVYERGAGET 212
>gnl|CDD|39522 KOG4321, KOG4321, KOG4321, Predicted phosphate acyltransferases
[Lipid transport and metabolism].
Length = 279
Score = 26.9 bits (59), Expect = 6.2
Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 7 NALNTSMFPMENISPIRWWV-MDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLY 65
N + ++P+ P+++ + P+ Y+E+ + +I +++LG+ + WL+ +
Sbjct: 180 NKVRIPVYPIYGGFPVKFRTYLGKPIPYDENLTPQDLQI-KVTLGSYTSIAWLMRCSFNF 238
Query: 66 TSGTSAISDDLLSPKSLP 83
+AI D + + LP
Sbjct: 239 VQVATAIEDLINQHQRLP 256
>gnl|CDD|36908 KOG1695, KOG1695, KOG1695, Glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 206
Score = 26.8 bits (59), Expect = 6.7
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 21 PIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72
PIR V +E+ +I ME + + + +LE + AI
Sbjct: 17 PIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAI 68
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,237,656
Number of extensions: 176233
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 13
Length of query: 257
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 165
Effective length of database: 4,275,709
Effective search space: 705491985
Effective search space used: 705491985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)