RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] (257 letters) >gnl|CDD|184635 PRK14341, PRK14341, lipoate-protein ligase B; Provisional. Length = 213 Score = 351 bits (904), Expect = 8e-98 Identities = 127/217 (58%), Positives = 162/217 (74%), Gaps = 5/217 (2%) Query: 20 SPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP 79 P+ W + D V Y E+ ME + I+ G A+ELVWLLEHPPLYT+GTSA ++DLL P Sbjct: 2 PPVEWRISDGLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDLLDP 61 Query: 80 KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGE 139 PVY TGRGG YTYHGPGQR+ Y+ML+L +RR+D+R FVAALEE II TL I GE Sbjct: 62 DRFPVYETGRGGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRGE 121 Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199 RREDRVG+WV R +K E+KIAAIG+R+R+W+SFHG+S+N+ PDLS+++GIVP Sbjct: 122 RREDRVGVWVRRPDK-----GSGAEDKIAAIGVRLRRWVSFHGISINVEPDLSHFSGIVP 176 Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGP 236 CGIS+HGVTSL +LG +M +D ++K+FE VFGP Sbjct: 177 CGISEHGVTSLVDLGLPVTMDDVDAALKKAFEKVFGP 213 >gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional. Length = 209 Score = 192 bits (488), Expect = 1e-49 Identities = 91/215 (42%), Positives = 139/215 (64%), Gaps = 10/215 (4%) Query: 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81 IR+ + + DY+ + +ME + ++ + E+V+L+EH +YT+GT+ ++LL+ Sbjct: 2 IRFITIPDFADYQVTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEELLNYGD 61 Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLA--KRRKDLRCFVAALEEVIIRTLKILGIVGE 139 +PV TGRGG +T+HGPGQR+IY +LNLA R KDL+ ++ LEE II +L GI Sbjct: 62 IPVIYTGRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKAY 121 Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199 +D+VGIWV K R ++ KIAAIG+R+RKW+++HG+++NIS DLS ++GI+P Sbjct: 122 IIKDKVGIWV----KVRKDEF----AKIAAIGVRVRKWVTYHGVAINISTDLSKFSGIIP 173 Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 CG+ VTSL +LG M D +I+ F +F Sbjct: 174 CGLENSLVTSLNQLGIHVEMSEFDKIIQTEFNKIF 208 >gnl|CDD|161768 TIGR00214, lipB, lipoate-protein ligase B. Involved in lipoate biosynthesis as the main determinant of the lipoyl-protein ligase activity required for lipoylation of enzymes such as alpha-ketoacid dehydrogenases. Involved in activation and re-activation (following denaturation) of lipoyl-protein ligases (calcium ion-dependant process). Length = 184 Score = 164 bits (416), Expect = 3e-41 Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 16/186 (8%) Query: 53 EELVWLLEHPPLYTSGTSAISDDLLSPKSLP---VYTTGRGGGYTYHGPGQRIIYIMLNL 109 + + L+EH P+YT G + ++ LL +P V + RGG TYHGPGQ+++Y++L+L Sbjct: 12 LDEIMLVEHYPVYTQGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDL 71 Query: 110 AKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAA 169 + + D+R V LE+ +I TL LGI GE D G+WV +K+A+ Sbjct: 72 KRFQLDVRWLVTQLEQTVIITLAELGIEGEPIADATGVWVE-------------GKKVAS 118 Query: 170 IGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKS 229 +GIR+R+ +FHGL+LNI+ DLS ++ I PCG + + SL + +++ + L+ K+ Sbjct: 119 LGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPGATVENVAPLLIKA 178 Query: 230 FESVFG 235 F + G Sbjct: 179 FAELLG 184 >gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional. Length = 234 Score = 148 bits (377), Expect = 8e-37 Identities = 73/188 (38%), Positives = 104/188 (55%), Gaps = 16/188 (8%) Query: 31 VDYEESQIIMEREI--QRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP-KSLPVYTT 87 VDY+E+ ++RE+ R++ G + + LLEHP +YT+G + P PV Sbjct: 20 VDYQEA-WDLQRELADARVA-GEGPDTLLLLEHPAVYTAGKRTEPHER--PTDGTPVVDV 75 Query: 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGI 147 RGG T+HGPGQ + Y ++ LA+ D+ +V LEE +I LG+ R + R G+ Sbjct: 76 DRGGKITWHGPGQLVGYPIIKLAEP-LDVVDYVRRLEEALIAVCADLGLNAGRVDGRSGV 134 Query: 148 WVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGV 207 WV D KIAAIGIR+ + ++ HG +LN DL+ + IVPCGIS GV Sbjct: 135 WVPADGGRPD-------RKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGV 187 Query: 208 TSL-KELG 214 T+L ELG Sbjct: 188 TTLSAELG 195 >gnl|CDD|184636 PRK14342, PRK14342, lipoate-protein ligase B; Provisional. Length = 213 Score = 146 bits (372), Expect = 4e-36 Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 15/181 (8%) Query: 56 VWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK- 114 +WL+EHPP++T G + + +L+P +PV + RGG TYHGPGQ ++Y++L+L KR K Sbjct: 38 IWLVEHPPVFTQGQAGKPEHILNPGDIPVVQSDRGGQVTYHGPGQLVMYVLLDL-KRLKL 96 Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174 +R V A+E+ +I TL GI + D G++V D + KIA++G+RI Sbjct: 97 GVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYV-------DGK------KIASLGLRI 143 Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234 R+ SFHGL+LN++ DLS + I PCG + +T L +LG ++ + + ++ Sbjct: 144 RRGCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELLALL 203 Query: 235 G 235 G Sbjct: 204 G 204 >gnl|CDD|172820 PRK14344, PRK14344, lipoate-protein ligase B; Provisional. Length = 223 Score = 138 bits (349), Expect = 1e-33 Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 17/212 (8%) Query: 28 DNPVDYEESQIIMEREIQRISLGN-AEELVWLLEHPPLYTSGTSAISDDLLSPKS---LP 83 DN V +E++ + Q + + VWLLEH YT G A D+LL + Sbjct: 24 DNIVPFEDAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLFSLNNPPAD 83 Query: 84 VYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRED 143 V+ RGG T+H PGQ + Y++L+L + KDL ++ LE+V+I L LGI GER + Sbjct: 84 VFRIDRGGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDG 143 Query: 144 RVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGIS 203 G+W + +K+A+IGI R+WI+ HG SLN+ DL + IVPCG+ Sbjct: 144 LTGVW-------------IGNKKVASIGIGCRRWITQHGFSLNVDCDLEGFNKIVPCGLE 190 Query: 204 QHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235 V L + ++K + L++KS + FG Sbjct: 191 GCQVGRLSDWIPGLNIKEVKPLLKKSLQERFG 222 >gnl|CDD|184637 PRK14343, PRK14343, lipoate-protein ligase B; Provisional. Length = 235 Score = 130 bits (328), Expect = 4e-31 Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 9/147 (6%) Query: 56 VWLLEHPPLYTSGTSAISDDLLSPKS-LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK 114 +WL+EHPP+YT G + LL S +P+ RGG TYHGPGQ + Y++L+L +R+ Sbjct: 47 IWLVEHPPVYTLGQAGDPAHLLVADSGIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRKL 106 Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174 +R V +E+ +I TL + ER+ GI+V KIAA+G++I Sbjct: 107 MVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYV--------ASGPHQGAKIAALGLKI 158 Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCG 201 R S+HGLSLN+ DL + I PCG Sbjct: 159 RNGCSYHGLSLNVKMDLRPFLAINPCG 185 >gnl|CDD|184639 PRK14346, PRK14346, lipoate-protein ligase B; Provisional. Length = 230 Score = 126 bits (317), Expect = 8e-30 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 18/187 (9%) Query: 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRG 90 VDY + M+ + +EL W+ EHPP+YT G + +D +L+P +PV T RG Sbjct: 11 VDYLATVQAMQAFTAERTPETPDEL-WICEHPPVYTQGLAGKADHVLNPGDIPVVATNRG 69 Query: 91 GGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVV 150 G TYHGPGQ + Y +++L + ++ +V +EE +IRTL G+ G R GI+ V Sbjct: 70 GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTGHRVAGAPGIY-V 128 Query: 151 RLNKTRDNQLLLIEE----------------KIAAIGIRIRKWISFHGLSLNISPDLSYY 194 RL+ + L KIAA+GI++ + ++HG++LN++ DL + Sbjct: 129 RLDDPFSHAALPQRPQKRGGGAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPF 188 Query: 195 TGIVPCG 201 + I PCG Sbjct: 189 SRINPCG 195 >gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional. Length = 220 Score = 122 bits (307), Expect = 9e-29 Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%) Query: 22 IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81 I+W + P DY M+ G A+E +WL EH P+YT G + + LL+P Sbjct: 2 IKW--LARPADYASVWDAMKAFTAARGPGTADE-IWLCEHAPVYTLGQAGRPEHLLNPGL 58 Query: 82 LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVG-ER 140 +PV RGG TYHGPGQ + Y + +L + +R +V LE+ + TL+ LG+ R Sbjct: 59 IPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACR 118 Query: 141 REDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPC 200 + GI+V + KIAA+G+++R ++HGL+LNI DLS + GI PC Sbjct: 119 KPGAPGIYVPQPGGEL--------AKIAALGVKVRNGYAYHGLALNIDMDLSPFLGINPC 170 Query: 201 GISQHGVTSLKELGYSYSM 219 G L G S+ Sbjct: 171 GYEGLRTVDLAACGVRTSV 189 >gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional. Length = 221 Score = 112 bits (280), Expect = 1e-25 Identities = 66/174 (37%), Positives = 94/174 (54%), Gaps = 15/174 (8%) Query: 53 EELVWLLEHPPLYTSGTSA------ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106 E + EHP +YT G S + ++ L +Y RGG TYHGPGQ + Y + Sbjct: 38 ENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPI 97 Query: 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166 LNL + L+ +V LEE +IR G+V R E G+W + + +R K Sbjct: 98 LNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVW-LEGDTSR-------ARK 149 Query: 167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSM 219 I AIG+R +++ HGL+LN++ DL Y++ I PCG GVTSL+ ELG+S M Sbjct: 150 ICAIGVRSSHYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDM 203 >gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional. Length = 300 Score = 36.3 bits (84), Expect = 0.007 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Query: 88 GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEV-----IIRTLKILGIVGERRE 142 G G + Y G G ++ K V A + I L+I+ + + +E Sbjct: 139 GPVGKFEYLGNGTYTVHKGKGGLKTMH-----VDAFAMIAGGTGITPMLQIIHAIKKNKE 193 Query: 143 DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIV 198 DR +++V N+T D+ LL E AA R W + L +P+ Y TG V Sbjct: 194 DRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVW---YTLDREATPEWKYGTGYV 246 >gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase. Length = 557 Score = 30.7 bits (69), Expect = 0.39 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 24/149 (16%) Query: 64 LYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF--VA 121 + +++SDDL +P +L + + I +L+ K +K + +A Sbjct: 410 FHDEFVTSMSDDLHTPVALAALSEP-----------LKTINDLLHTRKGKKQEKRLESLA 458 Query: 122 ALEEVIIRTLKILGIV----GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR---- 173 ALE+ I L +LG++ E + + R T + L IEE+ A + Sbjct: 459 ALEKKIRDVLSVLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEK 518 Query: 174 ---IRKWISFHGLSLNISPDLSYYTGIVP 199 IRK ++ G++L SPD + + +P Sbjct: 519 SDAIRKDLAAVGIALMDSPDGTTWRPAIP 547 >gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated. Length = 421 Score = 28.9 bits (65), Expect = 1.3 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%) Query: 32 DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYT-SGTSAISD 74 YE+ + +EI+ A WL E+PP + G S I D Sbjct: 286 TYEQ----VIKEIEEYIGKVAAADPWLRENPPQFKWGGESMIED 325 >gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae. Length = 792 Score = 27.8 bits (62), Expect = 2.8 Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 195 TGIVPCGISQHGVTSLKELGYSYSMKY 221 T P I QHG+T KE +++ Sbjct: 446 TDGWPVVIYQHGITGAKENALAFAGTL 472 >gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional. Length = 426 Score = 27.5 bits (62), Expect = 3.2 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 16/49 (32%) Query: 57 WLLE-HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIY 104 WL++ HP L+ T AIS+ GG++ PG+ +Y Sbjct: 149 WLVDNHPELFEGVTEAISE---------------VGGFSLTVPGRDRLY 182 >gnl|CDD|150138 pfam09362, DUF1996, Domain of unknown function (DUF1996). This family of proteins are functionally uncharacterized. Length = 229 Score = 27.7 bits (62), Expect = 3.3 Identities = 10/29 (34%), Positives = 15/29 (51%) Query: 69 TSAISDDLLSPKSLPVYTTGRGGGYTYHG 97 T+A +D+ P+ V + G GY HG Sbjct: 195 TTAFNDEGNWPEQPFVLSNGDPTGYGAHG 223 >gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional. Length = 566 Score = 27.0 bits (59), Expect = 4.7 Identities = 7/18 (38%), Positives = 13/18 (72%) Query: 22 IRWWVMDNPVDYEESQII 39 WW+ D P+++E S+I+ Sbjct: 462 FNWWINDIPIEHENSEIL 479 >gnl|CDD|162255 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. Length = 287 Score = 26.6 bits (59), Expect = 6.7 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 20/81 (24%) Query: 77 LSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF---------VAALEEVI 127 P +L V T+ Y G + ML LA R ++LR L VI Sbjct: 138 AGPNALIVRTSWL---YGGGGGRNFVR-TMLRLAGRGEELRVVDDQIGSPTYAKDLARVI 193 Query: 128 IRTLKILGIVGERREDRVGIW 148 L +R G++ Sbjct: 194 AALL-------QRLARARGVY 207 >gnl|CDD|163199 TIGR03282, methan_mark_13, putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others. Length = 352 Score = 26.3 bits (58), Expect = 9.2 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%) Query: 207 VTSLKELGYSYSMKYID----TLIRKSF-ESVFGPTI 238 V LKELGY Y + +D TL +S ES FG T+ Sbjct: 312 VAPLKELGYDYVVVELDAHARTLGVRSIVESEFGETL 348 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 26.1 bits (58), Expect = 9.7 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%) Query: 205 HGVTSLKELGY----------SYSMKYIDTLIRKSFESVFGPTILH--EYANINDVI 249 H +LK+ GY + S Y DT R FE + +L+ E NI VI Sbjct: 580 HAAFALKKEGYETIMINNNPETVSTDY-DTADRLYFEPLTLEDVLNVAEAENIKGVI 635 >gnl|CDD|161882 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. Length = 314 Score = 26.0 bits (58), Expect = 9.8 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%) Query: 173 RIRKWISFHGLSLNISPDLS------YYTGIV 198 + + + G+ IS DL YYTG++ Sbjct: 236 AVLELLEARGVEEYISLDLGLVRGYHYYTGLI 267 >gnl|CDD|178258 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein. Length = 395 Score = 26.0 bits (57), Expect = 9.9 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%) Query: 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRV 145 G RII + +L RR RC V L +L ++ R RV Sbjct: 14 GASGRIIPVFRSLLSRRALRRCLVFLHSLF----LWLLLLLRLRPRRRV 58 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0641 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,361,213 Number of extensions: 289406 Number of successful extensions: 508 Number of sequences better than 10.0: 1 Number of HSP's gapped: 489 Number of HSP's successfully gapped: 30 Length of query: 257 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 166 Effective length of database: 4,028,145 Effective search space: 668672070 Effective search space used: 668672070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.5 bits)