RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (257 letters)



>gnl|CDD|184635 PRK14341, PRK14341, lipoate-protein ligase B; Provisional.
          Length = 213

 Score =  351 bits (904), Expect = 8e-98
 Identities = 127/217 (58%), Positives = 162/217 (74%), Gaps = 5/217 (2%)

Query: 20  SPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP 79
            P+ W + D  V Y E+   ME  +  I+ G A+ELVWLLEHPPLYT+GTSA ++DLL P
Sbjct: 2   PPVEWRISDGLVPYPEALAFMEARVAAIAAGTADELVWLLEHPPLYTAGTSAKAEDLLDP 61

Query: 80  KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGE 139
              PVY TGRGG YTYHGPGQR+ Y+ML+L +RR+D+R FVAALEE II TL    I GE
Sbjct: 62  DRFPVYETGRGGQYTYHGPGQRVAYVMLDLKRRRRDVRAFVAALEEWIIATLAAFNIRGE 121

Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199
           RREDRVG+WV R +K         E+KIAAIG+R+R+W+SFHG+S+N+ PDLS+++GIVP
Sbjct: 122 RREDRVGVWVRRPDK-----GSGAEDKIAAIGVRLRRWVSFHGISINVEPDLSHFSGIVP 176

Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVFGP 236
           CGIS+HGVTSL +LG   +M  +D  ++K+FE VFGP
Sbjct: 177 CGISEHGVTSLVDLGLPVTMDDVDAALKKAFEKVFGP 213


>gnl|CDD|172823 PRK14347, PRK14347, lipoate-protein ligase B; Provisional.
          Length = 209

 Score =  192 bits (488), Expect = 1e-49
 Identities = 91/215 (42%), Positives = 139/215 (64%), Gaps = 10/215 (4%)

Query: 22  IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81
           IR+  + +  DY+ +  +ME  + ++   +  E+V+L+EH  +YT+GT+   ++LL+   
Sbjct: 2   IRFITIPDFADYQVTLKLMEDYVNKVISDHEPEIVYLVEHSEVYTAGTNYKQEELLNYGD 61

Query: 82  LPVYTTGRGGGYTYHGPGQRIIYIMLNLA--KRRKDLRCFVAALEEVIIRTLKILGIVGE 139
           +PV  TGRGG +T+HGPGQR+IY +LNLA   R KDL+ ++  LEE II +L   GI   
Sbjct: 62  IPVIYTGRGGKFTFHGPGQRVIYPILNLASPNRHKDLKLYIKMLEEWIINSLNYFGIKAY 121

Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVP 199
             +D+VGIWV    K R ++      KIAAIG+R+RKW+++HG+++NIS DLS ++GI+P
Sbjct: 122 IIKDKVGIWV----KVRKDEF----AKIAAIGVRVRKWVTYHGVAINISTDLSKFSGIIP 173

Query: 200 CGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234
           CG+    VTSL +LG    M   D +I+  F  +F
Sbjct: 174 CGLENSLVTSLNQLGIHVEMSEFDKIIQTEFNKIF 208


>gnl|CDD|161768 TIGR00214, lipB, lipoate-protein ligase B.  Involved in lipoate
           biosynthesis as the main determinant of the
           lipoyl-protein ligase activity required for lipoylation
           of enzymes such as alpha-ketoacid dehydrogenases.
           Involved in activation and re-activation (following
           denaturation) of lipoyl-protein ligases (calcium
           ion-dependant process).
          Length = 184

 Score =  164 bits (416), Expect = 3e-41
 Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 16/186 (8%)

Query: 53  EELVWLLEHPPLYTSGTSAISDDLLSPKSLP---VYTTGRGGGYTYHGPGQRIIYIMLNL 109
            + + L+EH P+YT G +  ++ LL    +P   V  + RGG  TYHGPGQ+++Y++L+L
Sbjct: 12  LDEIMLVEHYPVYTQGQAGKTEHLLFDPDIPPAEVVQSERGGQVTYHGPGQQVMYVILDL 71

Query: 110 AKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAA 169
            + + D+R  V  LE+ +I TL  LGI GE   D  G+WV               +K+A+
Sbjct: 72  KRFQLDVRWLVTQLEQTVIITLAELGIEGEPIADATGVWVE-------------GKKVAS 118

Query: 170 IGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKS 229
           +GIR+R+  +FHGL+LNI+ DLS ++ I PCG +   + SL +     +++ +  L+ K+
Sbjct: 119 LGIRVRRGCTFHGLALNINMDLSPFSHINPCGYAGREMGSLNQFLPGATVENVAPLLIKA 178

Query: 230 FESVFG 235
           F  + G
Sbjct: 179 FAELLG 184


>gnl|CDD|184638 PRK14345, PRK14345, lipoate-protein ligase B; Provisional.
          Length = 234

 Score =  148 bits (377), Expect = 8e-37
 Identities = 73/188 (38%), Positives = 104/188 (55%), Gaps = 16/188 (8%)

Query: 31  VDYEESQIIMEREI--QRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSP-KSLPVYTT 87
           VDY+E+   ++RE+   R++ G   + + LLEHP +YT+G      +   P    PV   
Sbjct: 20  VDYQEA-WDLQRELADARVA-GEGPDTLLLLEHPAVYTAGKRTEPHER--PTDGTPVVDV 75

Query: 88  GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGI 147
            RGG  T+HGPGQ + Y ++ LA+   D+  +V  LEE +I     LG+   R + R G+
Sbjct: 76  DRGGKITWHGPGQLVGYPIIKLAEP-LDVVDYVRRLEEALIAVCADLGLNAGRVDGRSGV 134

Query: 148 WVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGV 207
           WV       D        KIAAIGIR+ + ++ HG +LN   DL+ +  IVPCGIS  GV
Sbjct: 135 WVPADGGRPD-------RKIAAIGIRVSRGVTMHGFALNCDNDLAAFDAIVPCGISDAGV 187

Query: 208 TSL-KELG 214
           T+L  ELG
Sbjct: 188 TTLSAELG 195


>gnl|CDD|184636 PRK14342, PRK14342, lipoate-protein ligase B; Provisional.
          Length = 213

 Score =  146 bits (372), Expect = 4e-36
 Identities = 67/181 (37%), Positives = 107/181 (59%), Gaps = 15/181 (8%)

Query: 56  VWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK- 114
           +WL+EHPP++T G +   + +L+P  +PV  + RGG  TYHGPGQ ++Y++L+L KR K 
Sbjct: 38  IWLVEHPPVFTQGQAGKPEHILNPGDIPVVQSDRGGQVTYHGPGQLVMYVLLDL-KRLKL 96

Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174
            +R  V A+E+ +I TL   GI    + D  G++V       D +      KIA++G+RI
Sbjct: 97  GVRQLVTAIEQTVINTLAEYGIEAHAKPDAPGVYV-------DGK------KIASLGLRI 143

Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLKELGYSYSMKYIDTLIRKSFESVF 234
           R+  SFHGL+LN++ DLS +  I PCG +   +T L +LG   ++  +   +     ++ 
Sbjct: 144 RRGCSFHGLALNVNMDLSPFLRINPCGYAGLEMTQLSDLGGPATVDEVAPRLLAELLALL 203

Query: 235 G 235
           G
Sbjct: 204 G 204


>gnl|CDD|172820 PRK14344, PRK14344, lipoate-protein ligase B; Provisional.
          Length = 223

 Score =  138 bits (349), Expect = 1e-33
 Identities = 74/212 (34%), Positives = 111/212 (52%), Gaps = 17/212 (8%)

Query: 28  DNPVDYEESQIIMEREIQRISLGN-AEELVWLLEHPPLYTSGTSAISDDLLSPKS---LP 83
           DN V +E++    +   Q +       + VWLLEH   YT G  A  D+LL   +     
Sbjct: 24  DNIVPFEDAWKWQKEWQQALIEDPSNPQAVWLLEHQLCYTLGRGASEDNLLFSLNNPPAD 83

Query: 84  VYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRED 143
           V+   RGG  T+H PGQ + Y++L+L +  KDL  ++  LE+V+I  L  LGI GER + 
Sbjct: 84  VFRIDRGGEVTHHMPGQLVTYLVLDLRRFNKDLNWYLRQLEQVLIDVLADLGIDGERLDG 143

Query: 144 RVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGIS 203
             G+W             +  +K+A+IGI  R+WI+ HG SLN+  DL  +  IVPCG+ 
Sbjct: 144 LTGVW-------------IGNKKVASIGIGCRRWITQHGFSLNVDCDLEGFNKIVPCGLE 190

Query: 204 QHGVTSLKELGYSYSMKYIDTLIRKSFESVFG 235
              V  L +     ++K +  L++KS +  FG
Sbjct: 191 GCQVGRLSDWIPGLNIKEVKPLLKKSLQERFG 222


>gnl|CDD|184637 PRK14343, PRK14343, lipoate-protein ligase B; Provisional.
          Length = 235

 Score =  130 bits (328), Expect = 4e-31
 Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 9/147 (6%)

Query: 56  VWLLEHPPLYTSGTSAISDDLLSPKS-LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK 114
           +WL+EHPP+YT G +     LL   S +P+    RGG  TYHGPGQ + Y++L+L +R+ 
Sbjct: 47  IWLVEHPPVYTLGQAGDPAHLLVADSGIPLVKVDRGGQITYHGPGQVVAYLLLDLRRRKL 106

Query: 115 DLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRI 174
            +R  V  +E+ +I TL    +  ER+    GI+V                KIAA+G++I
Sbjct: 107 MVRELVTRIEQAVIDTLAAYNLASERKAGAPGIYV--------ASGPHQGAKIAALGLKI 158

Query: 175 RKWISFHGLSLNISPDLSYYTGIVPCG 201
           R   S+HGLSLN+  DL  +  I PCG
Sbjct: 159 RNGCSYHGLSLNVKMDLRPFLAINPCG 185


>gnl|CDD|184639 PRK14346, PRK14346, lipoate-protein ligase B; Provisional.
          Length = 230

 Score =  126 bits (317), Expect = 8e-30
 Identities = 64/187 (34%), Positives = 101/187 (54%), Gaps = 18/187 (9%)

Query: 31  VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSLPVYTTGRG 90
           VDY  +   M+      +    +EL W+ EHPP+YT G +  +D +L+P  +PV  T RG
Sbjct: 11  VDYLATVQAMQAFTAERTPETPDEL-WICEHPPVYTQGLAGKADHVLNPGDIPVVATNRG 69

Query: 91  GGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVV 150
           G  TYHGPGQ + Y +++L +    ++ +V  +EE +IRTL   G+ G R     GI+ V
Sbjct: 70  GQVTYHGPGQVVAYPLIDLRRAGYFVKEYVYRIEEAVIRTLAHFGVTGHRVAGAPGIY-V 128

Query: 151 RLNKTRDNQLLLIEE----------------KIAAIGIRIRKWISFHGLSLNISPDLSYY 194
           RL+    +  L                    KIAA+GI++ +  ++HG++LN++ DL  +
Sbjct: 129 RLDDPFSHAALPQRPQKRGGGAPQPPFRGLGKIAALGIKVSRHCTYHGVALNVAMDLEPF 188

Query: 195 TGIVPCG 201
           + I PCG
Sbjct: 189 SRINPCG 195


>gnl|CDD|172825 PRK14349, PRK14349, lipoate-protein ligase B; Provisional.
          Length = 220

 Score =  122 bits (307), Expect = 9e-29
 Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 12/199 (6%)

Query: 22  IRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKS 81
           I+W  +  P DY      M+        G A+E +WL EH P+YT G +   + LL+P  
Sbjct: 2   IKW--LARPADYASVWDAMKAFTAARGPGTADE-IWLCEHAPVYTLGQAGRPEHLLNPGL 58

Query: 82  LPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVG-ER 140
           +PV    RGG  TYHGPGQ + Y + +L +    +R +V  LE+  + TL+ LG+    R
Sbjct: 59  IPVVHCDRGGQVTYHGPGQVLAYTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACR 118

Query: 141 REDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPC 200
           +    GI+V +              KIAA+G+++R   ++HGL+LNI  DLS + GI PC
Sbjct: 119 KPGAPGIYVPQPGGEL--------AKIAALGVKVRNGYAYHGLALNIDMDLSPFLGINPC 170

Query: 201 GISQHGVTSLKELGYSYSM 219
           G        L   G   S+
Sbjct: 171 GYEGLRTVDLAACGVRTSV 189


>gnl|CDD|172824 PRK14348, PRK14348, lipoate-protein ligase B; Provisional.
          Length = 221

 Score =  112 bits (280), Expect = 1e-25
 Identities = 66/174 (37%), Positives = 94/174 (54%), Gaps = 15/174 (8%)

Query: 53  EELVWLLEHPPLYTSGTSA------ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIM 106
           E  +   EHP +YT G S       + ++ L      +Y   RGG  TYHGPGQ + Y +
Sbjct: 38  ENRIIFCEHPHVYTLGRSGKENNMLLGEEQLKTIGATLYHIDRGGDITYHGPGQLVCYPI 97

Query: 107 LNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEK 166
           LNL +    L+ +V  LEE +IR     G+V  R E   G+W +  + +R         K
Sbjct: 98  LNLEEFGLGLKEYVHLLEEAVIRVCASYGVVAGRLEKATGVW-LEGDTSR-------ARK 149

Query: 167 IAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSM 219
           I AIG+R   +++ HGL+LN++ DL Y++ I PCG    GVTSL+ ELG+S  M
Sbjct: 150 ICAIGVRSSHYVTMHGLALNVNTDLRYFSYIHPCGFIDKGVTSLQQELGHSIDM 203


>gnl|CDD|173521 PTZ00319, PTZ00319, NADH-cytochrome B5 reductase; Provisional.
          Length = 300

 Score = 36.3 bits (84), Expect = 0.007
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 13/116 (11%)

Query: 88  GRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEV-----IIRTLKILGIVGERRE 142
           G  G + Y G G   ++      K        V A   +     I   L+I+  + + +E
Sbjct: 139 GPVGKFEYLGNGTYTVHKGKGGLKTMH-----VDAFAMIAGGTGITPMLQIIHAIKKNKE 193

Query: 143 DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIV 198
           DR  +++V  N+T D+ LL  E   AA   R   W   + L    +P+  Y TG V
Sbjct: 194 DRTKVFLVYANQTEDDILLRKELDEAAKDPRFHVW---YTLDREATPEWKYGTGYV 246


>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
          Length = 557

 Score = 30.7 bits (69), Expect = 0.39
 Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 24/149 (16%)

Query: 64  LYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF--VA 121
            +    +++SDDL +P +L   +              + I  +L+  K +K  +    +A
Sbjct: 410 FHDEFVTSMSDDLHTPVALAALSEP-----------LKTINDLLHTRKGKKQEKRLESLA 458

Query: 122 ALEEVIIRTLKILGIV----GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIR---- 173
           ALE+ I   L +LG++     E  +      + R   T +  L  IEE+  A   +    
Sbjct: 459 ALEKKIRDVLSVLGLMPTSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYEK 518

Query: 174 ---IRKWISFHGLSLNISPDLSYYTGIVP 199
              IRK ++  G++L  SPD + +   +P
Sbjct: 519 SDAIRKDLAAVGIALMDSPDGTTWRPAIP 547


>gnl|CDD|181495 PRK08596, PRK08596, acetylornithine deacetylase; Validated.
          Length = 421

 Score = 28.9 bits (65), Expect = 1.3
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 32  DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYT-SGTSAISD 74
            YE+    + +EI+      A    WL E+PP +   G S I D
Sbjct: 286 TYEQ----VIKEIEEYIGKVAAADPWLRENPPQFKWGGESMIED 325


>gnl|CDD|163296 TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family.
            Members of this protein family are bacterial
           lipoproteins largely from the Gammaproteobacteria.
           Characterized members are expressed in extracellularly
           and have esterase activity. Members include the lipase
           Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell
           elongation factor (cef) from Vibrio hollisae.
          Length = 792

 Score = 27.8 bits (62), Expect = 2.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 195 TGIVPCGISQHGVTSLKELGYSYSMKY 221
           T   P  I QHG+T  KE   +++   
Sbjct: 446 TDGWPVVIYQHGITGAKENALAFAGTL 472


>gnl|CDD|181163 PRK07906, PRK07906, hypothetical protein; Provisional.
          Length = 426

 Score = 27.5 bits (62), Expect = 3.2
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 16/49 (32%)

Query: 57  WLLE-HPPLYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIY 104
           WL++ HP L+   T AIS+                GG++   PG+  +Y
Sbjct: 149 WLVDNHPELFEGVTEAISE---------------VGGFSLTVPGRDRLY 182


>gnl|CDD|150138 pfam09362, DUF1996, Domain of unknown function (DUF1996).  This
           family of proteins are functionally uncharacterized.
          Length = 229

 Score = 27.7 bits (62), Expect = 3.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 69  TSAISDDLLSPKSLPVYTTGRGGGYTYHG 97
           T+A +D+   P+   V + G   GY  HG
Sbjct: 195 TTAFNDEGNWPEQPFVLSNGDPTGYGAHG 223


>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
          Length = 566

 Score = 27.0 bits (59), Expect = 4.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 22  IRWWVMDNPVDYEESQII 39
             WW+ D P+++E S+I+
Sbjct: 462 FNWWINDIPIEHENSEIL 479


>gnl|CDD|162255 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase.  This enzyme
           catalyzes the last of 4 steps in making dTDP-rhamnose, a
           precursor of LPS core antigen, O-antigen, etc.
          Length = 287

 Score = 26.6 bits (59), Expect = 6.7
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 20/81 (24%)

Query: 77  LSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCF---------VAALEEVI 127
             P +L V T+     Y   G    +   ML LA R ++LR              L  VI
Sbjct: 138 AGPNALIVRTSWL---YGGGGGRNFVR-TMLRLAGRGEELRVVDDQIGSPTYAKDLARVI 193

Query: 128 IRTLKILGIVGERREDRVGIW 148
              L       +R     G++
Sbjct: 194 AALL-------QRLARARGVY 207


>gnl|CDD|163199 TIGR03282, methan_mark_13, putative methanogenesis marker 13
           metalloprotein.  Members of this protein family, to
           date, are found in a completed prokaryotic genome if and
           only if the species is one of the archaeal methanogens.
           The exact function is unknown, but likely is linked to
           methanogenesis or a process closely connected to it.
           This metal cluster-binding family is related to
           nitrogenase structural protein NifD and accessory
           protein NifE, among others.
          Length = 352

 Score = 26.3 bits (58), Expect = 9.2
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 207 VTSLKELGYSYSMKYID----TLIRKSF-ESVFGPTI 238
           V  LKELGY Y +  +D    TL  +S  ES FG T+
Sbjct: 312 VAPLKELGYDYVVVELDAHARTLGVRSIVESEFGETL 348


>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit;
           Reviewed.
          Length = 1068

 Score = 26.1 bits (58), Expect = 9.7
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 13/57 (22%)

Query: 205 HGVTSLKELGY----------SYSMKYIDTLIRKSFESVFGPTILH--EYANINDVI 249
           H   +LK+ GY          + S  Y DT  R  FE +    +L+  E  NI  VI
Sbjct: 580 HAAFALKKEGYETIMINNNPETVSTDY-DTADRLYFEPLTLEDVLNVAEAENIKGVI 635


>gnl|CDD|161882 TIGR00443, hisZ_biosyn_reg, ATP phosphoribosyltransferase,
           regulatory subunit.  Apparant second copies of
           histidyl-tRNA synthetase, found in Bacillus subtilis,
           Synechocystis sp., Aquifex aeolicus, and others, are in
           fact a regulatory subunit of ATP
           phosphoribosyltransferase, and usually encoded by a gene
           adjacent to that encoding the catalytic subunit.
          Length = 314

 Score = 26.0 bits (58), Expect = 9.8
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)

Query: 173 RIRKWISFHGLSLNISPDLS------YYTGIV 198
            + + +   G+   IS DL       YYTG++
Sbjct: 236 AVLELLEARGVEEYISLDLGLVRGYHYYTGLI 267


>gnl|CDD|178258 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
          Length = 395

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 97  GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRV 145
           G   RII +  +L  RR   RC V          L +L ++  R   RV
Sbjct: 14  GASGRIIPVFRSLLSRRALRRCLVFLHSLF----LWLLLLLRLRPRRRV 58


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0641    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,361,213
Number of extensions: 289406
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 30
Length of query: 257
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 166
Effective length of database: 4,028,145
Effective search space: 668672070
Effective search space used: 668672070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)