RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] (257 letters) >2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} (A:) Length = 288 Score = 147 bits (372), Expect = 1e-36 Identities = 25/276 (9%), Positives = 60/276 (21%), Gaps = 36/276 (13%) Query: 8 ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67 +L + + +S + I + + H Sbjct: 4 SLLLQQHLSQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVL 63 Query: 68 GTSAISDDLLSP-------KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120 G + V GG G + ++L ++ + Sbjct: 64 GIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKE-EKGFSIDDGY 122 Query: 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF 180 E+I + E RE + + D + K A I R + Sbjct: 123 ELXYELICSXFQDHREQIEAREIVGSYCPGSYDLSIDGK------KFAGISQRRIRGGVA 176 Query: 181 HGLSLNISPDLSYYTG----IVPCGISQHGVTSLK-------------ELGYSYSMKYID 223 + L +S + ++ + LG +++ + Sbjct: 177 VQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVL 236 Query: 224 TLIRKSFESVFGPTILH-----EYANINDVISTKQS 254 + + + E+ + Sbjct: 237 LKALXTLQQHGASLLTESLSADEWLLYEQHFARISE 272 >2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:) Length = 288 Score = 144 bits (363), Expect = 1e-35 Identities = 34/277 (12%), Positives = 70/277 (25%), Gaps = 37/277 (13%) Query: 8 ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67 +L +S + +V D D E+ I E ++ I+ N E ++ + Sbjct: 2 SLEWQDLAQLPVSIFKDYVTD-AQDAEKPFIWTEVFLREINRSNQEIILHIWPXTKTVIL 60 Query: 68 GTSA-------ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK-DLRCF 119 G ++ + + GG G +++ RK + Sbjct: 61 GXLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDG 120 Query: 120 VAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179 + I E E L + +K A + R K Sbjct: 121 YLIXVDFIRSIFSDFYQPIEHFEVETSYCP------GKFDLSINGKKFAGLAQRRIKNGI 174 Query: 180 FHGLSLNISPDLSYYTG----IVPCGISQHGVTSLK-------------ELGYSYSMKYI 222 + L++ D + G+ G L +++ + Sbjct: 175 AVSIYLSVCGDQKGRSQXISDFYKIGLGDTGSPIAYPNVDPEIXANLSDLLDCPXTVEDV 234 Query: 223 DTLIRKSFESVFGPTILH-----EYANINDVISTKQS 254 S + V L A + + + Sbjct: 235 IDRXLISLKQVGFNDRLLXIRPDLVAEFDRFQAKSXA 271 >1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} (A:) Length = 232 Score = 140 bits (353), Expect = 2e-34 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 15/229 (6%) Query: 12 SMFPMENISPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS 70 +M V VDY + + G A+ L LLEHP +YT+G Sbjct: 2 AMAGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTL-LLLEHPAVYTAGRR 60 Query: 71 AISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRT 130 + + PV T RGG T+HGPGQ + Y ++ L D+ +V LEE +I+ Sbjct: 61 TETHERPIDG-TPVVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLIQV 118 Query: 131 LKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190 LG+ R + R G+W+ K+AAIG+R+ + + HG +LN D Sbjct: 119 CADLGLHAGRVDGRSGVWLPGRP----------ARKVAAIGVRVSRATTLHGFALNCDCD 168 Query: 191 LSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTI 238 L+ +T IVPCGIS VTSL ELG + ++ + + + + + Sbjct: 169 LAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 217 >2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:) Length = 262 Score = 136 bits (342), Expect = 4e-33 Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 28/252 (11%) Query: 24 WWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSA-----ISDDLL 77 ++ P + S E + G+ L H G + D + Sbjct: 4 RLLLLETPGNTRMSLAYDEAIYRSFQYGDKPIL-RFYRHDRSVIIGYFQVAEEEVDLDYM 62 Query: 78 SPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137 + + GGG YH G ++ + D+ + E ++ +L+ILG+ Sbjct: 63 KKNGIMLARRYTGGGAVYHDLGDLNFSVVRS--SDDMDITSMFRTMNEAVVNSLRILGLD 120 Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD---LSYY 194 E V + ++ E+KI +RK ++ + D LS Sbjct: 121 ARPGELNDVSIPVN----KKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAV 176 Query: 195 TGIVPCGISQHGVTSLKELGYSY------SMKYIDTLIRKSFESVFGPTILH------EY 242 + S +E + S+ + + + F E Sbjct: 177 LKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEE 236 Query: 243 ANINDVISTKQS 254 + ++ K S Sbjct: 237 SLARELFDKKYS 248 >2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:1-246) Length = 246 Score = 135 bits (340), Expect = 8e-33 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 34/235 (14%) Query: 20 SPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSA-----IS 73 + ++ + D + +E I + +++L + P G + Sbjct: 1 TVKSGLILQSISNDVYH-NLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECN 59 Query: 74 DDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKI 133 +L+ + + + GGG YH G + ++ D + + + Sbjct: 60 LNLMREEGVKLARRRSGGGTVYHDMGNINLTFFTTK--KKYDRMENLKLVVRALKAVHPH 117 Query: 134 LGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSY 193 L + +R D + + KI+ +I + ++H +L D ++ Sbjct: 118 LDVQATKRFDLLLDG---------------QFKISGTASKIGRNAAYHHCTLLCGTDGTF 162 Query: 194 YTG---IVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTI 238 + GI + V +L E + + + + + + + Sbjct: 163 LSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDN 217 >2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A (A:) Length = 237 Score = 131 bits (329), Expect = 1e-31 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 24/239 (10%) Query: 5 SRNALNTSMFPMENISPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPP 63 S + + S + S + + V D V Y E+ +R + + GN + LLEHP Sbjct: 4 SHHHHHHSSGLVPRGSHMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPR 63 Query: 64 LYTSGTSAISDDLLSPKSL------PVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLR 117 + T G A ++LL P+S +Y RGG TYHGPGQ + Y + + +++R Sbjct: 64 VITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV---GREVR 120 Query: 118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW 177 F+ +EE I+R GI G+WV E+K+ AIG+ +++ Sbjct: 121 RFLRQIEEAIVRVAAGYGISAYPTPGYAGVWV-------------GEDKLCAIGVAVKEG 167 Query: 178 ISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFG 235 +SFHG +LN++ DL+ +T IVPCG+ GVTSL+ LG M+ + +F VFG Sbjct: 168 VSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFG 226 >3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244) Length = 244 Score = 123 bits (310), Expect = 2e-29 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 33/229 (14%) Query: 25 WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSL-- 82 ++ + D + + E +++ + +++L + G + + + + Sbjct: 5 LLISDSYDPWFNLAVEECIFRQMPAT--QRVLFLWRNADTVVIGRAQNPWKECNTRRMEE 62 Query: 83 ---PVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGE 139 + GGG +H G M +++ L LG+ E Sbjct: 63 DNVRLARRSSGGGAVFHDLGNTCFTFMAGKP------EYDKTISTSIVLNALNALGVSAE 116 Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDL---SYYTG 196 + K++ R K FH +L ++ DL + Y Sbjct: 117 ASGRNDLVVKTVEGD----------RKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166 Query: 197 IVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTI 238 ++ G VT+L EL + + + I ++F + +G + Sbjct: 167 PDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERV 215 >2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:1-187) Length = 187 Score = 92.8 bits (230), Expect = 3e-20 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 31/207 (14%) Query: 45 QRISLGNAEELVWLLEHPP---LYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQR 101 + V + + + ++ G G Sbjct: 2 LGLKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADK-QTMGHGALNRKWESPEGGL 60 Query: 102 IIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL 161 + I+L+ +KDL V ++ TLK I G + N +L Sbjct: 61 WLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKW--------------PNDVL 106 Query: 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMK 220 + +KIA + + + G+ LN++ + +G TS+K ELG + Sbjct: 107 VNYKKIAGVLVEGKGDKIVLGIGLNVNNKV------------PNGATSMKLELGSEVPLL 154 Query: 221 YIDTLIRKSFESVFGPTILHEYANIND 247 + + + + ++ + + +N Sbjct: 155 SVFRSLITNLDRLYLNFLKNPMDILNL 181 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251) Length = 209 Score = 48.1 bits (114), Expect = 1e-06 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 25/138 (18%) Query: 109 LAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIA 168 ++K ++ + +I TL LG+ E N L + +K Sbjct: 57 ISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTG--------------RNDLEIDGKKFC 102 Query: 169 AIGIRIRKWISFHGLSLNISPDLSYYTGIV---PCGISQHG-------VTSLKE-LGYSY 217 H L DLS + G VT++ L Sbjct: 103 GNAQAYINGRIXHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKI 162 Query: 218 SMKYIDTLIRKSFESVFG 235 +++ L+ + + + Sbjct: 163 TVEKFRDLLLEYXKKEYP 180 >2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} (A:1-191) Length = 191 Score = 44.3 bits (104), Expect = 2e-05 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%) Query: 87 TGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVG 146 GR G Y G ++L+ + + + II LK + Sbjct: 38 KGRWGRVWYSDEGGLYFSMVLDSKLYNPKVINLLVPI--CIIEVLKNYVDKELGLKFPND 95 Query: 147 IWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHG 206 I V + + K+ I + G+ +N++ + Sbjct: 96 IMVKVNDNYK---------KLGGILTELTDDYMIIGIGINVNNQ--------IRNEIREI 138 Query: 207 VTSLK-ELGYSYSMKYIDTLIRKSFESVF 234 SLK G I + K+FES Sbjct: 139 AISLKEITGKELDKVEILSNFLKTFESYL 167 >3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP, virulence, acyltransferase, aminotransferase, pyridoxal phosphate, transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A (A:) Length = 409 Score = 29.9 bits (65), Expect = 0.30 Identities = 4/46 (8%), Positives = 11/46 (23%) Query: 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL 134 + II + LN + + + + + Sbjct: 363 SVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408 >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} (A:141-320) Length = 180 Score = 28.7 bits (64), Expect = 0.83 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Query: 152 LNKTRDNQLLLIEEKIAAIGIRIRKWISFHG-------LSLNISPDLSYY 194 ++K + +L++ EK++ G + W+S L L I D+ Y Sbjct: 19 VSKLKGRTVLVVGEKLSVPGKMV-DWLSDRPEATFRARLDLGIPGDVPKY 67 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 27.5 bits (61), Expect = 1.6 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 38/89 (42%) Query: 84 VYTTGR--GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR 141 + TT R Y P LN+ R++ L R Sbjct: 6 ILTTAREHHSSVKYASP-------NLNMKYRKRQL----------------------VTR 36 Query: 142 EDRVGIWVVRLNKTRDNQLLLIEEKIAAI 170 E ++ W +N+L ++ + I Sbjct: 37 EAQIKDW-------VENELEALKLEAEEI 58 >2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (c:29-146) Length = 118 Score = 26.7 bits (59), Expect = 3.6 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%) Query: 89 RGGGYTYHGP-GQRIIYIMLNLAKRRKDLRCFVAAL---EEVIIRTLKI 133 GG + R + +N ++R + +A L V+ + +I Sbjct: 68 CRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRI 116 >1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin; 1.50A {Aspergillus aculeatus} (A:1-244) Length = 244 Score = 26.3 bits (58), Expect = 3.7 Identities = 5/27 (18%), Positives = 7/27 (25%) Query: 9 LNTSMFPMENISPIRWWVMDNPVDYEE 35 LN+ + P E D Sbjct: 112 LNSDLLPNEEPFGDVSTTADGTAIEGS 138 >1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326) Length = 128 Score = 26.4 bits (58), Expect = 4.3 Identities = 7/41 (17%), Positives = 14/41 (34%) Query: 80 KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120 LP++ T Y+ P +A+ + +V Sbjct: 72 PHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYV 112 >1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (C:24-132) Length = 109 Score = 25.9 bits (57), Expect = 5.2 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 89 RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAAL---EEVIIRTLKI 133 G + ++ + LN +R+ +R +AA + V R + Sbjct: 61 VKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEF 108 >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} (A:1-67,A:350-476) Length = 194 Score = 25.6 bits (56), Expect = 6.0 Identities = 9/50 (18%), Positives = 15/50 (30%) Query: 97 GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVG 146 P + I L R + VA + + I G+ + G Sbjct: 139 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAVEG 188 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.138 0.409 Gapped Lambda K H 0.267 0.0508 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,047,241 Number of extensions: 95726 Number of successful extensions: 257 Number of sequences better than 10.0: 1 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 25 Length of query: 257 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 170 Effective length of database: 2,015,014 Effective search space: 342552380 Effective search space used: 342552380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.1 bits)