RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
         (257 letters)



>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2,
           protein structure initiative, NEW YORK structural
           genomix research consortium; 2.21A {Bacillus halodurans
           c-125} (A:)
          Length = 288

 Score =  147 bits (372), Expect = 1e-36
 Identities = 25/276 (9%), Positives = 60/276 (21%), Gaps = 36/276 (13%)

Query: 8   ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67
           +L       +    +            +S    +     I    +   +    H      
Sbjct: 4   SLLLQQHLSQPWRFLDHTSFGPTFQALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVL 63

Query: 68  GTSAISDDLLSP-------KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120
           G        +             V     GG       G   + ++L   ++   +    
Sbjct: 64  GIQDSRLPQIKAGIEALKGFQHDVIVRNSGGLAVVLDSGILNLSLVLKE-EKGFSIDDGY 122

Query: 121 AALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISF 180
               E+I    +      E RE          + + D +      K A I  R  +    
Sbjct: 123 ELXYELICSXFQDHREQIEAREIVGSYCPGSYDLSIDGK------KFAGISQRRIRGGVA 176

Query: 181 HGLSLNISPDLSYYTG----IVPCGISQHGVTSLK-------------ELGYSYSMKYID 223
             + L +S   +             ++      +               LG  +++  + 
Sbjct: 177 VQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVL 236

Query: 224 TLIRKSFESVFGPTILH-----EYANINDVISTKQS 254
                + +      +       E+       +    
Sbjct: 237 LKALXTLQQHGASLLTESLSADEWLLYEQHFARISE 272


>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A,
           structural genomics, protein structure initiative,
           PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:)
          Length = 288

 Score =  144 bits (363), Expect = 1e-35
 Identities = 34/277 (12%), Positives = 70/277 (25%), Gaps = 37/277 (13%)

Query: 8   ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67
           +L         +S  + +V D   D E+  I  E  ++ I+  N E ++ +         
Sbjct: 2   SLEWQDLAQLPVSIFKDYVTD-AQDAEKPFIWTEVFLREINRSNQEIILHIWPXTKTVIL 60

Query: 68  GTSA-------ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRK-DLRCF 119
           G          ++   +  +         GG       G     +++     RK  +   
Sbjct: 61  GXLDRELPHLELAKKEIISRGYEPVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDG 120

Query: 120 VAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWIS 179
                + I           E  E                 L +  +K A +  R  K   
Sbjct: 121 YLIXVDFIRSIFSDFYQPIEHFEVETSYCP------GKFDLSINGKKFAGLAQRRIKNGI 174

Query: 180 FHGLSLNISPDLSYYTG----IVPCGISQHGVTSLK-------------ELGYSYSMKYI 222
              + L++  D    +         G+   G                   L    +++ +
Sbjct: 175 AVSIYLSVCGDQKGRSQXISDFYKIGLGDTGSPIAYPNVDPEIXANLSDLLDCPXTVEDV 234

Query: 223 DTLIRKSFESVFGPTILH-----EYANINDVISTKQS 254
                 S + V     L        A  +   +   +
Sbjct: 235 IDRXLISLKQVGFNDRLLXIRPDLVAEFDRFQAKSXA 271


>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid,
           acyltransferase, mycobacterium tuberculosis structural
           proteomics project; HET: DKA; 1.08A {Mycobacterium
           tuberculosis} (A:)
          Length = 232

 Score =  140 bits (353), Expect = 2e-34
 Identities = 69/229 (30%), Positives = 105/229 (45%), Gaps = 15/229 (6%)

Query: 12  SMFPMENISPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS 70
           +M            V     VDY  +  +          G A+ L  LLEHP +YT+G  
Sbjct: 2   AMAGSIRSKLSAIDVRQLGTVDYRTAWQLQRELADARVAGGADTL-LLLEHPAVYTAGRR 60

Query: 71  AISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRT 130
             + +       PV  T RGG  T+HGPGQ + Y ++ L     D+  +V  LEE +I+ 
Sbjct: 61  TETHERPIDG-TPVVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLIQV 118

Query: 131 LKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD 190
              LG+   R + R G+W+                K+AAIG+R+ +  + HG +LN   D
Sbjct: 119 CADLGLHAGRVDGRSGVWLPGRP----------ARKVAAIGVRVSRATTLHGFALNCDCD 168

Query: 191 LSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFGPTI 238
           L+ +T IVPCGIS   VTSL  ELG + ++  +   +  +  +     +
Sbjct: 169 LAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 217


>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A
           {Thermoplasma acidophilum} (A:)
          Length = 262

 Score =  136 bits (342), Expect = 4e-33
 Identities = 37/252 (14%), Positives = 74/252 (29%), Gaps = 28/252 (11%)

Query: 24  WWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSA-----ISDDLL 77
             ++   P +   S    E   +    G+   L     H      G        +  D +
Sbjct: 4   RLLLLETPGNTRMSLAYDEAIYRSFQYGDKPIL-RFYRHDRSVIIGYFQVAEEEVDLDYM 62

Query: 78  SPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137
               + +     GGG  YH  G     ++ +      D+      + E ++ +L+ILG+ 
Sbjct: 63  KKNGIMLARRYTGGGAVYHDLGDLNFSVVRS--SDDMDITSMFRTMNEAVVNSLRILGLD 120

Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD---LSYY 194
               E       V     +   ++  E+KI      +RK       ++ +  D   LS  
Sbjct: 121 ARPGELNDVSIPVN----KKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAV 176

Query: 195 TGIVPCGISQHGVTSLKELGYSY------SMKYIDTLIRKSFESVFGPTILH------EY 242
             +           S +E   +       S+  +   + + F                E 
Sbjct: 177 LKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEE 236

Query: 243 ANINDVISTKQS 254
           +   ++   K S
Sbjct: 237 SLARELFDKKYS 248


>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A
           {Bos taurus} (A:1-246)
          Length = 246

 Score =  135 bits (340), Expect = 8e-33
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 34/235 (14%)

Query: 20  SPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSA-----IS 73
           +     ++ +   D     + +E  I        + +++L  + P    G         +
Sbjct: 1   TVKSGLILQSISNDVYH-NLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECN 59

Query: 74  DDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKI 133
            +L+  + + +     GGG  YH  G   +        ++ D    +  +   +      
Sbjct: 60  LNLMREEGVKLARRRSGGGTVYHDMGNINLTFFTTK--KKYDRMENLKLVVRALKAVHPH 117

Query: 134 LGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSY 193
           L +   +R D +                  + KI+    +I +  ++H  +L    D ++
Sbjct: 118 LDVQATKRFDLLLDG---------------QFKISGTASKIGRNAAYHHCTLLCGTDGTF 162

Query: 194 YTG---IVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTI 238
            +        GI  +        V +L E   + + + +   +   + +      
Sbjct: 163 LSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDN 217


>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A
           {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A
           (A:)
          Length = 237

 Score =  131 bits (329), Expect = 1e-31
 Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 24/239 (10%)

Query: 5   SRNALNTSMFPMENISPIRWWVMDN-PVDYEESQIIMEREIQRISLGNAEELVWLLEHPP 63
           S +  + S   +   S + + V D   V Y E+    +R  + +  GN    + LLEHP 
Sbjct: 4   SHHHHHHSSGLVPRGSHMEFLVEDLGLVPYGEAWAYQKRVHREVVAGNRPPTLLLLEHPR 63

Query: 64  LYTSGTSAISDDLLSPKSL------PVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLR 117
           + T G  A  ++LL P+S        +Y   RGG  TYHGPGQ + Y +  +    +++R
Sbjct: 64  VITLGRKATGENLLFPESWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV---GREVR 120

Query: 118 CFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKW 177
            F+  +EE I+R     GI         G+WV              E+K+ AIG+ +++ 
Sbjct: 121 RFLRQIEEAIVRVAAGYGISAYPTPGYAGVWV-------------GEDKLCAIGVAVKEG 167

Query: 178 ISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMKYIDTLIRKSFESVFG 235
           +SFHG +LN++ DL+ +T IVPCG+   GVTSL+  LG    M+     +  +F  VFG
Sbjct: 168 VSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFG 226


>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic
           acid, ATP-binding, cytoplasm, nucleotide-binding,
           transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli}
           PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244)
          Length = 244

 Score =  123 bits (310), Expect = 2e-29
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 33/229 (14%)

Query: 25  WVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAISDDLLSPKSL-- 82
            ++ +  D   +  + E   +++     + +++L  +      G +       + + +  
Sbjct: 5   LLISDSYDPWFNLAVEECIFRQMPAT--QRVLFLWRNADTVVIGRAQNPWKECNTRRMEE 62

Query: 83  ---PVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGE 139
               +     GGG  +H  G      M                   +++  L  LG+  E
Sbjct: 63  DNVRLARRSSGGGAVFHDLGNTCFTFMAGKP------EYDKTISTSIVLNALNALGVSAE 116

Query: 140 RREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDL---SYYTG 196
                  +                  K++    R  K   FH  +L ++ DL   + Y  
Sbjct: 117 ASGRNDLVVKTVEGD----------RKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLN 166

Query: 197 IVPCGISQHG-------VTSLKELGYSYSMKYIDTLIRKSFESVFGPTI 238
                ++  G       VT+L EL    + + +   I ++F + +G  +
Sbjct: 167 PDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYGERV 215


>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin
           biosynthesis, dimer, X-RAY diffraction, structural
           genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus
           horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A
           2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A*
           2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A
           2e10_A ... (A:1-187)
          Length = 187

 Score = 92.8 bits (230), Expect = 3e-20
 Identities = 30/207 (14%), Positives = 65/207 (31%), Gaps = 31/207 (14%)

Query: 45  QRISLGNAEELVWLLEHPP---LYTSGTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQR 101
             +        V   +       +   +      ++          G          G  
Sbjct: 2   LGLKTSIIGRRVIYFQEITSTNEFAKTSYLEEGTVIVADK-QTMGHGALNRKWESPEGGL 60

Query: 102 IIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLL 161
            + I+L+    +KDL   V      ++ TLK   I G  +                N +L
Sbjct: 61  WLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFSIDGRIKW--------------PNDVL 106

Query: 162 LIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHGVTSLK-ELGYSYSMK 220
           +  +KIA + +  +      G+ LN++  +             +G TS+K ELG    + 
Sbjct: 107 VNYKKIAGVLVEGKGDKIVLGIGLNVNNKV------------PNGATSMKLELGSEVPLL 154

Query: 221 YIDTLIRKSFESVFGPTILHEYANIND 247
            +   +  + + ++   + +    +N 
Sbjct: 155 SVFRSLITNLDRLYLNFLKNPMDILNL 181


>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
           (A:1-49,A:92-251)
          Length = 209

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 25/138 (18%)

Query: 109 LAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIA 168
           ++K  ++      +    +I TL  LG+  E                  N L +  +K  
Sbjct: 57  ISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTG--------------RNDLEIDGKKFC 102

Query: 169 AIGIRIRKWISFHGLSLNISPDLSYYTGIV---PCGISQHG-------VTSLKE-LGYSY 217
                       H   L    DLS     +          G       VT++   L    
Sbjct: 103 GNAQAYINGRIXHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKI 162

Query: 218 SMKYIDTLIRKSFESVFG 235
           +++    L+ +  +  + 
Sbjct: 163 TVEKFRDLLLEYXKKEYP 180


>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY
           diffraction, structural genomics, NPPSFA; HET: BTN;
           2.00A {Methanocaldococcus jannaschii} (A:1-191)
          Length = 191

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 25/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 87  TGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVG 146
            GR G   Y   G     ++L+       +   +  +   II  LK         +    
Sbjct: 38  KGRWGRVWYSDEGGLYFSMVLDSKLYNPKVINLLVPI--CIIEVLKNYVDKELGLKFPND 95

Query: 147 IWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGIVPCGISQHG 206
           I V   +  +         K+  I   +       G+ +N++               +  
Sbjct: 96  IMVKVNDNYK---------KLGGILTELTDDYMIIGIGINVNNQ--------IRNEIREI 138

Query: 207 VTSLK-ELGYSYSMKYIDTLIRKSFESVF 234
             SLK   G       I +   K+FES  
Sbjct: 139 AISLKEITGKELDKVEILSNFLKTFESYL 167


>3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP,
           virulence, acyltransferase, aminotransferase, pyridoxal
           phosphate, transferase; HET: PLP; 1.80A {Vibrio
           cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
           (A:)
          Length = 409

 Score = 29.9 bits (65), Expect = 0.30
 Identities = 4/46 (8%), Positives = 11/46 (23%)

Query: 89  RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL 134
                      + II + LN     + +   +    + +       
Sbjct: 363 SVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNYGDFYF 408


>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain,
           hydrolase; 2.45A {Venezuelan equine encephalitis virus}
           (A:141-320)
          Length = 180

 Score = 28.7 bits (64), Expect = 0.83
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 8/50 (16%)

Query: 152 LNKTRDNQLLLIEEKIAAIGIRIRKWISFHG-------LSLNISPDLSYY 194
           ++K +   +L++ EK++  G  +  W+S          L L I  D+  Y
Sbjct: 19  VSKLKGRTVLVVGEKLSVPGKMV-DWLSDRPEATFRARLDLGIPGDVPKY 67


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.5 bits (61), Expect = 1.6
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 38/89 (42%)

Query: 84  VYTTGR--GGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERR 141
           + TT R       Y  P        LN+  R++ L                        R
Sbjct: 6   ILTTAREHHSSVKYASP-------NLNMKYRKRQL----------------------VTR 36

Query: 142 EDRVGIWVVRLNKTRDNQLLLIEEKIAAI 170
           E ++  W        +N+L  ++ +   I
Sbjct: 37  EAQIKDW-------VENELEALKLEAEEI 58


>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris} (c:29-146)
          Length = 118

 Score = 26.7 bits (59), Expect = 3.6
 Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 89  RGGGYTYHGP-GQRIIYIMLNLAKRRKDLRCFVAAL---EEVIIRTLKI 133
             GG  +      R  +  +N  ++R  +   +A L     V+ +  +I
Sbjct: 68  CRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRI 116


>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate
           active enzyme, pectin; 1.50A {Aspergillus aculeatus}
           (A:1-244)
          Length = 244

 Score = 26.3 bits (58), Expect = 3.7
 Identities = 5/27 (18%), Positives = 7/27 (25%)

Query: 9   LNTSMFPMENISPIRWWVMDNPVDYEE 35
           LN+ + P E          D       
Sbjct: 112 LNSDLLPNEEPFGDVSTTADGTAIEGS 138


>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A
           {Geobacillus stearothermophilus} (A:199-326)
          Length = 128

 Score = 26.4 bits (58), Expect = 4.3
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 80  KSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFV 120
             LP++ T     Y+   P          +A+   +   +V
Sbjct: 72  PHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYV 112


>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein
           complex, RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} (C:24-132)
          Length = 109

 Score = 25.9 bits (57), Expect = 5.2
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 89  RGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAAL---EEVIIRTLKI 133
             G   +    ++   + LN  +R+  +R  +AA    + V  R  + 
Sbjct: 61  VKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEF 108


>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC,
           structural genomics, protein structure initiative; HET:
           PLP; 2.00A {Rhodobacter sphaeroides 2}
           (A:1-67,A:350-476)
          Length = 194

 Score = 25.6 bits (56), Expect = 6.0
 Identities = 9/50 (18%), Positives = 15/50 (30%)

Query: 97  GPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVG 146
            P   +  I   L   R  +   VA + + I       G+  +      G
Sbjct: 139 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAVEG 188


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,047,241
Number of extensions: 95726
Number of successful extensions: 257
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 25
Length of query: 257
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 170
Effective length of database: 2,015,014
Effective search space: 342552380
Effective search space used: 342552380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)