RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
(257 letters)
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 216
Score = 129 bits (324), Expect = 3e-31
Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 21/231 (9%)
Query: 9 LNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSG 68
+ + + ++ +R VDY + + G A+ L LLEHP +YT+G
Sbjct: 5 IRSKLSAID----VRQL---GTVDYRTAWQLQRELADARVAGGADTL-LLLEHPAVYTAG 56
Query: 69 TSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVII 128
+ + + PV T RGG T+HGPGQ + Y ++ L D+ +V LEE +I
Sbjct: 57 RRTETHERPIDGT-PVVDTDRGGKITWHGPGQLVGYPIIGL-AEPLDVVNYVRRLEESLI 114
Query: 129 RTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNIS 188
+ LG+ R + R G+W+ + +AAIG+R+ + + HG +LN
Sbjct: 115 QVCADLGLHAGRVDGRSGVWLPGRPARK----------VAAIGVRVSRATTLHGFALNCD 164
Query: 189 PDLSYYTGIVPCGISQHGVTSL-KELGYSYSMKYIDTLIRKSFESVFGPTI 238
DL+ +T IVPCGIS VTSL ELG + ++ + + + + +
Sbjct: 165 CDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGVL 215
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 256
Score = 91.0 bits (225), Expect = 1e-19
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 27/252 (10%)
Query: 23 RWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSA-----ISDDLL 77
R +++ P + S E + G+ + ++ H G + D +
Sbjct: 4 RLLLLETPGNTRMSLAYDEAIYRSFQYGD-KPILRFYRHDRSVIIGYFQVAEEEVDLDYM 62
Query: 78 SPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIV 137
+ + GGG YH G ++ + D+ + E ++ +L+ILG+
Sbjct: 63 KKNGIMLARRYTGGGAVYHDLGDLNFSVVRS--SDDMDITSMFRTMNEAVVNSLRILGLD 120
Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPD---LSYY 194
E + + + ++ E+KI +RK ++ + D LS
Sbjct: 121 ARPGE-LNDVSIPV---NKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAV 176
Query: 195 TGIVPCGISQHGVTSLKE------LGYSYSMKYIDTLIRKSFESVFGPTIL------HEY 242
+ S +E S+ + + + F E
Sbjct: 177 LKVPDEKFRDKIAKSTRERVANVTDFVDVSIDEVRNALIRGFSETLHIDFREDTITEKEE 236
Query: 243 ANINDVISTKQS 254
+ ++ K S
Sbjct: 237 SLARELFDKKYS 248
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 246
Score = 76.3 bits (187), Expect = 2e-15
Identities = 36/215 (16%), Positives = 75/215 (34%), Gaps = 31/215 (14%)
Query: 48 SLGNAEELVWLLEHPPLYTSGTS-----AISDDLLSPKSLPVYTTGRGGGYTYHGPGQRI 102
+ + +++L + G + + + ++ + GGG +H G
Sbjct: 26 QMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTC 85
Query: 103 IYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLL 162
M + K + +++ L LG+ E R + V + R
Sbjct: 86 FTFMAGKPEYDKTI------STSIVLNALNALGVSAEASG-RNDLVVKTVEGDR------ 132
Query: 163 IEEKIAAIGIRIRKWISFHGLSLNISPDL---SYYTGIVPCGISQHG-------VTSLKE 212
K++ R K FH +L ++ DL + Y ++ G VT+L E
Sbjct: 133 ---KVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTE 189
Query: 213 LGYSYSMKYIDTLIRKSFESVFGPTILHEYANIND 247
L + + + I ++F + +G + E + N
Sbjct: 190 LLPGITHEQVCEAITEAFFAHYGERVEAEIISPNK 224
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 73.9 bits (181), Expect = 1e-14
Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 31/230 (13%)
Query: 31 VDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS-------AISDDLLSPKSLP 83
D E+ I E ++ I+ N E ++ + G ++ + +
Sbjct: 21 QDAEKPFIWTEVFLREINRSNQEIILHIWPMTKTVILGMLDRELPHLELAKKEIISRGYE 80
Query: 84 VYTTGRGGGYTYHGPGQRIIYIML-NLAKRRKDLRCFVAALEEVIIRTLKILGIVGERRE 142
GG G +++ ++ +R+ + + + I E E
Sbjct: 81 PVVRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSDFYQPIEHFE 140
Query: 143 DRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS----YYTGIV 198
V L + +K A + R K + L++ D +
Sbjct: 141 ------VETSYCPGKFDLSINGKKFAGLAQRRIKNGIAVSIYLSVCGDQKGRSQMISDFY 194
Query: 199 PCGISQHG------------VTSLKE-LGYSYSMKYIDTLIRKSFESVFG 235
G+ G + +L + L +++ + + S + V
Sbjct: 195 KIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDVIDRMLISLKQVGF 244
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 241
Score = 72.1 bits (176), Expect = 5e-14
Identities = 41/228 (17%), Positives = 69/228 (30%), Gaps = 38/228 (16%)
Query: 48 SLGNAEELVWLLEHPPLYTSGTSA-----ISDDLLSPKSLPVYTTGRGGGYTYHGPGQRI 102
L + +++ L + P G I+ D + + V GGG YH
Sbjct: 24 HLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLN 83
Query: 103 IYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLL 162
I+ K ++ + +I TL LG+ E T N L +
Sbjct: 84 YTIIS---KEDENKAFDFKSFSTPVINTLAQLGVKAEF--------------TGRNDLEI 126
Query: 163 IEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTG---IVPCGISQHGVTSLK-------- 211
+K H L DLS + GV S++
Sbjct: 127 DGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 186
Query: 212 ELGYSYSMKYIDTLIRKSFESVFG---PTILH--EYANINDVISTKQS 254
EL +++ L+ + + + + E A IN + TK
Sbjct: 187 ELPKKITVEKFRDLLLEYMKKEYPEMTEYVFSEEELAEINRIKDTKFG 234
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 62.0 bits (150), Expect = 5e-11
Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 31/235 (13%)
Query: 32 DYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTS-------AISDDLLSPKSLPV 84
+S + I + + H G + L V
Sbjct: 15 QALQSFAYDDTLCTSIGKSQSPPTLRAWVHHNTVVLGIQDSRLPQIKAGIEALKGFQHDV 74
Query: 85 YTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLKILGIVGERREDR 144
GG G + ++L K + + E+I + E RE
Sbjct: 75 IVRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGY-ELMYELICSMFQDHREQIEARE-- 131
Query: 145 VGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS----YYTGIVPC 200
+V L + +K A I R + + L +S +
Sbjct: 132 ----IVGSYCPGSYDLSIDGKKFAGISQRRIRGGVAVQIYLCVSGSGAERAKMIRTFYDK 187
Query: 201 GISQHG------------VTSLKE-LGYSYSMKYIDTLIRKSFESVFGPTILHEY 242
++ + SL E LG +++ + + + +
Sbjct: 188 AVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMTLQQHGASLLTESL 242
>d1qmga1 a.100.1.2 (A:308-595) Class II ketol-acid reductoisomerase
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 288
Score = 27.5 bits (61), Expect = 1.1
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 12/89 (13%)
Query: 138 GERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLSYYTGI 197
G R ++ G+ + K ++ + EK+ ++ L +T
Sbjct: 112 GRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPA------------GDLGPLYPFTAG 159
Query: 198 VPCGISQHGVTSLKELGYSYSMKYIDTLI 226
V + + L++ G+SYS +++I
Sbjct: 160 VYVALMMAQIEILRKKGHSYSEIINESVI 188
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 27.3 bits (59), Expect = 1.5
Identities = 20/191 (10%), Positives = 44/191 (23%), Gaps = 12/191 (6%)
Query: 8 ALNTSMFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTS 67
+ PI+ + YE Q R+ + + + P +
Sbjct: 88 SYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQF------GVEAIGAENPSVDA 141
Query: 68 GTSAISDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVI 127
A+ + + + G N A + +
Sbjct: 142 EVLAMVMHIYQSF------GLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQ 195
Query: 128 IRTLKILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNI 187
R + + + DR + + D + + + + N+
Sbjct: 196 SRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYLDDLGIPYTEDPNL 255
Query: 188 SPDLSYYTGIV 198
L YYT
Sbjct: 256 VRGLDYYTHTA 266
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase
{Pseudoalteromonas haloplanktis (Alteromonas
haloplanktis) [TaxId: 228]}
Length = 354
Score = 27.1 bits (59), Expect = 1.6
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 15 PMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLE 60
P E+I+ +WW PV YE + R GN + + ++
Sbjct: 37 PNEHITGSQWWTRYQPVSYE----LQSR------GGNRAQFIDMVN 72
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 25.0 bits (53), Expect = 7.4
Identities = 18/186 (9%), Positives = 46/186 (24%), Gaps = 11/186 (5%)
Query: 13 MFPMENISPIRWWVMDNPVDYEESQIIMEREIQRISLGNAEELVWLLEHPPLYTSGTSAI 72
+ R W + +E Q R+ ++ ++ + +
Sbjct: 91 EHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELI------ML 144
Query: 73 SDDLLSPKSLPVYTTGRGGGYTYHGPGQRIIYIMLNLAKRRKDLRCFVAALEEVIIRTLK 132
+ + + T ++ ++ K+ E+ R
Sbjct: 145 TARWWRALGISEHVTLELNSIGSLEARANYRDALVAFLEQHKEKLD-----EDCKRRMYT 199
Query: 133 ILGIVGERREDRVGIWVVRLNKTRDNQLLLIEEKIAAIGIRIRKWISFHGLSLNISPDLS 192
V + + V + D E A + + + ++ + L
Sbjct: 200 NPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLD 259
Query: 193 YYTGIV 198
YY V
Sbjct: 260 YYNRTV 265
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B
[TaxId: 5061]}
Length = 359
Score = 24.7 bits (53), Expect = 9.1
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 56 VWLLEHPPLYTSGTSAISDDLLSPKSLPVYTT--GRGGGYTYHGPGQRIIYIMLNLAKRR 113
W + + + P ++ + G+G G G R++
Sbjct: 80 SWCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVV-------SGA 132
Query: 114 KDLRCFVAALEEVIIRTLKILGIVGERREDRVGIWV 149
K+ VII+ + + I + I V
Sbjct: 133 KN----------VIIQNIAVTDINPKYVWGGDAITV 158
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 24.4 bits (53), Expect = 9.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 103 IYIMLNLAKRRKDLRCFVAALEEVIIRTLKIL 134
+ MLN +RR L ++ AL+ V R +
Sbjct: 88 VEAMLN-DRRRLALENYITALQAVPPRPRHVF 118
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 236
Score = 24.3 bits (53), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 148 WVVRLNKTRDNQLLL-IEEKIAAIGIRIRKWISFH 181
W+ + R ++ +EE I G++ ISFH
Sbjct: 30 WLASETEKRRRKICDSLEEAIRRSGLKNGMTISFH 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,009,771
Number of extensions: 48890
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 14
Length of query: 257
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,268,006
Effective search space: 220633044
Effective search space used: 220633044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)