HHsearch alignment for GI: 254780178 and conserved domain: COG0343
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=921.51 Aligned_cols=369 Identities=55% Similarity=0.898 Sum_probs=364.1
Q ss_pred EEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHCCC
Q ss_conf 99997649932799987887540585741068685688688999860998999322665738768998652742011015
Q gi|254780178|r 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFIRW 86 (378)
Q Consensus 7 F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl~~ 86 (378)
T Consensus 1 f~~~~~d~~aR~G~l~t~hg~ieTP~FmPVgt~~~vk~~~~~~l~~~ga~iil~NtYhl~lrpg~e~i~~~gGlH~f~~w 80 (372)
T COG0343 1 FEILAKDGGARVGRLETPHGVIETPAFMPVGTNGTVKGMTPEELKELGAQIILTNTYHLYLRPGLEIVALLGGLHKFMGW 80 (372)
T ss_pred CEEECCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCEEEECEEEEEECCCHHHHHHCCCHHHHHCC
T ss_conf 92224689735789971897452781652565454556799999865998895121311008852688870787888648
Q ss_pred CCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHH
Q ss_conf 77224114543210122102233331021014454158712999999987328977996012133221158999999988
Q gi|254780178|r 87 FKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELS 166 (378)
Q Consensus 87 ~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT 166 (378)
T Consensus 81 ~~pilTDSGgFQv~sL~~~~~~~e~gv~f~s~~dG~k~~~tpe~s~~iQ~~lGsDI~m~lDe~~~~~a~~~~a~~s~erT 160 (372)
T COG0343 81 DGPILTDSGGFQVFSLGDLRKITEEGVTFKSHIDGSKVFLTPEESMEIQKDLGSDIIMILDECTPPPADREYAEKSVERT 160 (372)
T ss_pred CCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99725357760578744333332244033124677503238099999999848966555475999998699999999999
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC
Q ss_conf 99999998851358886055402344436689999887642223467664135675167899899989850770331002
Q gi|254780178|r 167 LRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL 246 (378)
Q Consensus 167 ~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l 246 (378)
T Consensus 161 ~rwa~r~~~~~~~~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~~~~m~~il~~~~~~Lp~~kPryL 240 (372)
T COG0343 161 LRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKPLLPEDKPRYL 240 (372)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 99999999987466776588742387768799999999973799853405856787789999999986400899998775
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCC
Q ss_conf 54101899999985389836620000023320024562100210123223688559866981336889899988685785
Q gi|254780178|r 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNE 326 (378)
Q Consensus 247 ~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E 326 (378)
T Consensus 241 mGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t~~G~~~i~~~k~~~d~~pld~~C~C~~C~~ysRayl~hL~~~~e 320 (372)
T COG0343 241 MGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLTRDGRVNIRNAKLAEDTRPLDEPCSCPTCRNYSRAYLRHLRRANE 320 (372)
T ss_pred ECCCCHHHHHHHHHHCCCHHHCCCHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCH
T ss_conf 56879899999999487324235135530579478505851102144654078879998881127854016999974656
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 0899999999999999999999999985998999999999853279986
Q gi|254780178|r 327 SLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIPP 375 (378)
Q Consensus 327 ~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~~ 375 (378)
T Consensus 321 ~~~~~L~t~HNL~~~~~lm~~iR~AI~eg~f~e~~~~~~~~~~~~~~~~ 369 (372)
T COG0343 321 ELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAEKHPRLLPAY 369 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 8899999999999999999999998854978999999999643356655