HHsearch alignment for GI: 254780178 and conserved domain: PRK00112
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional.
Probab=100.00 E-value=0 Score=969.72 Aligned_cols=365 Identities=56% Similarity=0.927 Sum_probs=359.7
Q ss_pred CCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHH
Q ss_conf 87049999764993279998788754058574106868568868899986099899932266573876899865274201
Q gi|254780178|r 3 KNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHK 82 (378)
Q Consensus 3 ~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~ 82 (378)
T Consensus 1 ~~~~Fei~~~d~~AR~G~l~t~hg~i~TP~fmPVgt~~~vk~l~p~~l~~~g~~~il~NtYhl~lrpg~~~i~~~gGlH~ 80 (366)
T PRK00112 1 TMMKFELIKTDGRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYHLWLRPGEEVIKKHGGLHK 80 (366)
T ss_pred CCEEEEEEECCCCCCEEEEEECCEEEECCEEEEEECCCCCCCCCHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHCCHHH
T ss_conf 94699996130761338998399146388160410556457679999998289999646668776774899987088787
Q ss_pred HCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHH
Q ss_conf 10157722411454321012210223333102101445415871299999998732897799601213322115899999
Q gi|254780178|r 83 FIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162 (378)
Q Consensus 83 fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~s 162 (378)
T Consensus 81 fm~w~g~ilTDSGgfQv~Sl~~~~~i~e~Gv~F~s~~dG~~~~ltPE~~i~~Q~~iGsDI~m~lD~~~~~~~~~~~~~~a 160 (366)
T PRK00112 81 FMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDYAKKS 160 (366)
T ss_pred HCCCCCCEEECCCCEEEEEECCCCEECCCCEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHH
T ss_conf 62799981325760025672245343267069866768973664899999999961998799877567999889999999
Q ss_pred HHHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 998899999998851358-8860554023444366899998876422234676641356751678998999898507703
Q gi|254780178|r 163 MELSLRWAERSLVAFGNQ-PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE 241 (378)
Q Consensus 163 v~rT~~w~~~~~~~~~~~-~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~ 241 (378)
T Consensus 161 ~~rT~rWa~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~f~G~aIGGlsvGe~~~~~~~il~~~~~~LP~~ 240 (366)
T PRK00112 161 MERTLRWAERSRDAHDRLENGQALFGIVQGGVYEDLREESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED 240 (366)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999860788753887415766799999999999848984885467456778999999999987448877
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378)
T Consensus 241 kPryLmGvG~P~~i~~~V~~GvD~FDcv~Ptr~AR~G~~~T~~G~l~l~~~~~~~D~~Pid~~C~C~~C~~ySraYLhhL 320 (366)
T PRK00112 241 KPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKDDTRPLDPECDCYTCRNYSRAYLHHL 320 (366)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCCHHCCCCHHHHHCCCEECCCCEEEECCCHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
T ss_conf 75565358998999999993898111254057771584645698588231221168998798999934460499999777
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8578508999999999999999999999999859989999999998
Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQEN 367 (378)
Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~ 367 (378)
T Consensus 321 ~k~~E~l~~~Llt~HNL~~~~~l~~~iR~aI~~g~f~e~~~~~l~~ 366 (366)
T PRK00112 321 FRAGEILGARLLTIHNLHYYQRLMEEIREAIEEGRFLEFRAEFLAR 366 (366)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 3079568999999999999999999999999859899999999729