HHsearch alignment for GI: 254780178 and conserved domain: PRK13533
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional.
Probab=100.00 E-value=0 Score=694.83 Aligned_cols=327 Identities=24% Similarity=0.389 Sum_probs=305.2
Q ss_pred CEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCHHHC
Q ss_conf 04999976499327999878875405857410686856886889998609989993226657387689986527420110
Q gi|254780178|r 5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLHKFI 84 (378)
Q Consensus 5 ~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh~fl 84 (378)
T Consensus 1 ~~FEI~~~D~~aRiG~L~T~hG~IeTP~fmPV-inp~vk~i~p~el~~~Ga~iIItNtY~l~~rpg~~a~~~--GLH~fm 77 (486)
T PRK13533 1 GVFEIRDKDLAGRIGKLYTPHGVVETPALFPV-INPHKQEIPPEELKEFGFEALITNSYIIYRSERERALEK--GLHELL 77 (486)
T ss_pred CCCEEEECCCCCCEEEEECCCCEEECCCCCCC-CCCCCCCCCHHHHHHHCCCEEEEECCCEECCCCHHHHHC--CHHHHC
T ss_conf 96568733576023789708946607853235-277457118999998179899310110002760667760--708760
Q ss_pred CCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHH
Q ss_conf 15772241145432101221022333310210144541587129999999873289779960121332211589999999
Q gi|254780178|r 85 RWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAME 164 (378)
Q Consensus 85 ~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~ 164 (378)
T Consensus 78 ~wdgpImTDSGgFQv~~yG~V-------------------evtpeeiv~fQ~~IGSDI~m~lD~~t~~~~~~e~A~~sve 138 (486)
T PRK13533 78 GFDGVIMTDSGSYQLLVYGSV-------------------EVTNEEILEFQRKIGSDIGVPLDIPTGPDADREEAEEEVE 138 (486)
T ss_pred CCCCCEEECCCCCEEEECCCE-------------------ECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999973766887643563878-------------------4268999999998499889988618996999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCH--HHHHHHHHHHHHCCCHH
Q ss_conf 88999999988513588860554023444366899998876422234676641356-7516--78998999898507703
Q gi|254780178|r 165 LSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-GEPQ--EVMLHILSNVLPILPVE 241 (378)
Q Consensus 165 rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~-ge~~--~~~~~ii~~~~~~LP~~ 241 (378)
T Consensus 139 ~T~rrak~a~~~~~~-~~~~l~GpVQGg~y~DLR~~SA~~l~~l~FdgyaIGgvvplme~yry~~l~~~i~~ak~~lp~~ 217 (486)
T PRK13533 139 ETLERAEEAAALIKD-DDMLWVGPVQGGTYPDLRERSAREASKLGFDIYPLGSPTPLMESYRYDELVDVVLAAKSGLSPG 217 (486)
T ss_pred HHHHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 999999999986367-7877886316878699999999999868998705788718877614799999999997229999
Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378)
Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378)
T Consensus 218 ~PvHlFGaGHPm~f~lavAlG~DlFDSAsYalyArd~Rylt~~gT~~L~~l~~~--------Pc~cpvc~~ytp~el~~m 289 (486)
T PRK13533 218 APVHLFGAGHPMMFALAVALGCDLFDSASYALYARDGRYITRDGTYRLEDLEYL--------PCSCPVCSRYTPKELREM 289 (486)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCEECCCCCCCHHHCCCC--------CCCCCCCCCCCHHHHHHC
T ss_conf 971541588477899999957671436889988537946776666205431153--------667750367898999727
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 85785089999999999999999999999998599899999999
Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365 (378)
Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~ 365 (378)
T Consensus 290 ---~~~er~~llA~HNL~v~~~Ei~~ikqaI~eg~Lwelve~r~ 330 (486)
T PRK13533 290 ---PREERTRLLALHNLYVLFEEIRRIKQAIKEGRLWELVEERA 330 (486)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---88789999999889999999999999987395999999997