Query         gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 378
No_of_seqs    151 out of 1891
Neff          6.3 
Searched_HMMs 33803
Date          Mon May 23 10:29:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780178.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bld_A Queuine tRNA-ribosyltr 100.0       0       0  795.1  32.6  371    2-372    11-385 (386)
  2 >2ash_A Queuine tRNA-ribosyltr 100.0       0       0  795.6  32.0  339    2-374    10-348 (349)
  3 >1iq8_A Archaeosine tRNA-guani 100.0       0       0  672.3  22.1  335    1-370     4-341 (358)
  4 >2ash_A Queuine tRNA-ribosyltr  98.2   4E-07 1.2E-11   67.5   1.5   32   95-127     1-32  (32)
  5 >1rqb_A Transcarboxylase 5S su  92.9    0.71 2.1E-05   25.6   8.1  141  129-282   120-265 (359)
  6 >2ztj_A Homocitrate synthase;   91.3     1.1 3.2E-05   24.3  10.6  148  129-282    77-234 (277)
  7 >1nvm_A HOA, 4-hydroxy-2-oxova  90.2     1.4   4E-05   23.7   7.0   96  187-282   140-239 (273)
  8 >3bg3_A Pyruvate carboxylase,   87.9       2 5.8E-05   22.6   6.7   89  191-281   191-284 (398)
  9 >2ojp_A DHDPS, dihydrodipicoli  87.7    0.79 2.3E-05   25.3   4.2   27  243-269   179-205 (292)
 10 >3ewb_X 2-isopropylmalate synt  87.3     2.1 6.2E-05   22.4   9.9  150  129-283    83-243 (293)
 11 >1xky_A Dihydrodipicolinate sy  86.6     1.5 4.4E-05   23.4   5.1   20  249-268   196-215 (219)
 12 >3ler_A DHDPS, dihydrodipicoli  85.9     2.3 6.8E-05   22.2   5.8   99  129-236    31-131 (301)
 13 >3b4u_A Dihydrodipicolinate sy  84.6     2.9 8.5E-05   21.5   6.1   29  242-270   185-213 (228)
 14 >2rfg_A Dihydrodipicolinate sy  84.0     1.7   5E-05   23.0   4.4  124  128-261    23-153 (243)
 15 >3d0c_A Dihydrodipicolinate sy  83.7     3.1 9.2E-05   21.3   5.9   18  129-146    36-53  (217)
 16 >1xxx_A DHDPS, dihydrodipicoli  83.2     2.4 7.2E-05   22.0   4.9   18  129-146    38-55  (219)
 17 >2ehh_A DHDPS, dihydrodipicoli  82.2     2.6 7.7E-05   21.8   4.8   17  130-146    25-41  (294)
 18 >3eeg_A 2-isopropylmalate synt  82.2     3.6 0.00011   20.9   7.5  152  129-281    84-242 (325)
 19 >1sr9_A 2-isopropylmalate synt  81.8     2.4 7.1E-05   22.0   4.5   81  202-282   238-324 (370)
 20 >2yxg_A DHDPS, dihydrodipicoli  81.2     2.9 8.5E-05   21.5   4.7  101  129-239    24-126 (289)
 21 >3dz1_A Dihydrodipicolinate sy  79.3     4.4 0.00013   20.2   5.8  120  129-259    32-159 (313)
 22 >1o5k_A DHDPS, dihydrodipicoli  79.1     4.5 0.00013   20.2   5.4   22  246-267   197-218 (306)
 23 >2vc6_A MOSA, dihydrodipicolin  78.6     4.6 0.00014   20.1   5.8   19  129-147    24-42  (236)
 24 >2nx9_A Oxaloacetate decarboxy  78.1     4.8 0.00014   20.0   8.3  140  129-282   103-246 (353)
 25 >1gte_A Dihydropyrimidine dehy  76.4     5.3 0.00016   19.7   7.6  133  126-268   123-274 (280)
 26 >3flu_A DHDPS, dihydrodipicoli  75.9     5.5 0.00016   19.6   6.1   18  129-146    31-48  (297)
 27 >3g1v_A Orotidine 5'-phosphate  75.9     4.9 0.00015   19.9   4.6  122  126-269    78-202 (228)
 28 >3bi8_A Dihydrodipicolinate sy  74.8     5.9 0.00017   19.4   5.6   22  248-269   184-205 (291)
 29 >2r8w_A AGR_C_1641P; APC7498,   74.2     6.1 0.00018   19.3   5.5  102  128-239    57-160 (280)
 30 >3cpr_A Dihydrodipicolinate sy  73.7     6.2 0.00018   19.3   4.7   28  190-217    31-58  (221)
 31 >3daq_A DHDPS, dihydrodipicoli  70.2     7.4 0.00022   18.7   4.9   19  250-268   188-206 (229)
 32 >3hbl_A Pyruvate carboxylase;   69.8     7.6 0.00022   18.7  11.3  144  129-281   136-285 (389)
 33 >3bmx_A Uncharacterized lipopr  69.6     7.7 0.00023   18.6   6.0   21  255-275   255-275 (419)
 34 >3fkr_A L-2-keto-3-deoxyarabon  68.7       8 0.00024   18.5   6.1  124  128-261    31-164 (309)
 35 >3e96_A Dihydrodipicolinate sy  67.8     8.3 0.00025   18.4   5.8   15  254-268   199-213 (217)
 36 >3ivs_A Homocitrate synthase,   67.7     8.4 0.00025   18.4  11.6  146  127-280   111-266 (311)
 37 >3h5d_A DHDPS, dihydrodipicoli  65.7     9.1 0.00027   18.1   4.9   25  244-268   186-210 (214)
 38 >2nli_A Lactate oxidase; flavo  63.8       8 0.00024   18.5   3.5   77  199-275   240-319 (368)
 39 >2v9d_A YAGE; dihydrodipicolin  61.3      11 0.00032   17.6   4.8  101  129-239    55-157 (278)
 40 >1x38_A Beta-D-glucan exohydro  60.2      11 0.00034   17.5   4.7   23  255-277   238-260 (365)
 41 >1yxy_A Putative N-acetylmanno  60.2     1.8 5.4E-05   22.8  -0.3   61  202-266   146-212 (218)
 42 >1tb3_A Hydroxyacid oxidase 3;  59.6     6.5 0.00019   19.1   2.4   75  201-275   230-307 (352)
 43 >3ble_A Citramalate synthase f  59.4      12 0.00035   17.4   8.3  147  126-281    96-257 (337)
 44 >2h6r_A Triosephosphate isomer  58.4     9.8 0.00029   17.9   3.1  125  125-267    68-197 (219)
 45 >2nuw_A 2-keto-3-deoxygluconat  58.2      12 0.00036   17.3   6.2   15  254-268   180-194 (288)
 46 >2htm_A Thiazole biosynthesis   57.9      12 0.00037   17.2   6.8  124  129-267    80-205 (268)
 47 >2qf7_A Pyruvate carboxylase p  55.9      13  0.0004   17.0   6.6   90  191-281   192-284 (388)
 48 >2wkj_A N-acetylneuraminate ly  55.7      14  0.0004   17.0   5.9   79  129-217    35-114 (218)
 49 >1d3g_A Dihydroorotate dehydro  53.9      14 0.00043   16.8  10.6  135  133-267   170-325 (367)
 50 >2dp3_A Triosephosphate isomer  53.8      14 0.00043   16.8   3.5  172   34-234    68-252 (257)
 51 >1me8_A Inosine-5'-monophospha  53.6      10 0.00031   17.7   2.6   73  202-275   298-387 (503)
 52 >1qwg_A PSL synthase;, (2R)-ph  52.9      15 0.00044   16.7   6.9  126  127-265    86-222 (251)
 53 >3eb2_A Putative dihydrodipico  52.8      15 0.00044   16.7   5.9   18  129-146    28-45  (245)
 54 >1f6k_A N-acetylneuraminate ly  52.6      15 0.00045   16.7   5.4   79  129-217    27-107 (293)
 55 >3dfg_A Xcrecx, regulatory pro  50.1      12 0.00037   17.2   2.6   31  186-217    15-45  (53)
 56 >1a53_A IGPS, indole-3-glycero  49.1      17 0.00051   16.3  10.4  118  126-267    88-206 (223)
 57 >1ub3_A Aldolase protein; schi  47.8      18 0.00053   16.2   8.1  128  129-269    74-205 (220)
 58 >1kbi_A Cytochrome B2, L-LCR;   47.3      18 0.00054   16.1   3.2   77  199-275   260-344 (392)
 59 >2z6i_A Trans-2-enoyl-ACP redu  46.7      15 0.00046   16.6   2.6   75  200-276   121-198 (246)
 60 >1ydn_A Hydroxymethylglutaryl-  46.3      19 0.00056   16.0  10.4  147  126-276    79-238 (295)
 61 >3i65_A Dihydroorotate dehydro  45.3      20 0.00058   15.9   6.0  142  126-268   143-318 (360)
 62 >1ydo_A HMG-COA lyase; TIM-bar  45.2      20 0.00058   15.9   9.4  148  127-279    82-243 (307)
 63 >1o0y_A Deoxyribose-phosphate   44.3      20  0.0006   15.8   9.7  127  130-267   115-243 (260)
 64 >1f76_A Dihydroorotate dehydro  43.9      20  0.0006   15.8  12.8  137  135-271   161-320 (336)
 65 >2btm_A TIM, protein (trioseph  43.8      21 0.00061   15.8   4.5   77  149-233   172-248 (252)
 66 >1req_A Methylmalonyl-COA muta  43.5      20  0.0006   15.8   2.8   21  125-145    69-89  (163)
 67 >3igs_A N-acetylmannosamine-6-  41.6     6.7  0.0002   19.0   0.1   26  241-266   181-207 (213)
 68 >3bo9_A Putative nitroalkan di  40.8      23 0.00067   15.5   3.4   77  200-278   135-214 (248)
 69 >1yya_A Triosephosphate isomer  40.3      23 0.00069   15.4   5.3   77  150-234   173-249 (250)
 70 >1b9b_A TIM, protein (trioseph  40.2      17 0.00049   16.4   2.0   78  150-236   175-252 (255)
 71 >3f94_A Beta-glucosidase; (alp  39.5      24 0.00071   15.3   5.0   23  254-276   246-268 (397)
 72 >1w3i_A EDA, 2-keto-3-deoxy gl  39.3      24 0.00071   15.3   6.1   19  250-268   178-196 (293)
 73 >2i8d_A Uncharacterized conser  39.2      12 0.00036   17.3   1.1   26   73-98     28-53  (68)
 74 >3gvg_A Triosephosphate isomer  38.7      25 0.00072   15.3   4.8   20  126-145   101-120 (283)
 75 >2hl7_A Cytochrome C-type biog  38.3      20 0.00059   15.8   2.1   48  304-369    26-73  (84)
 76 >2cu0_A Inosine-5'-monophospha  35.9      27  0.0008   15.0   4.7  125  126-271   212-344 (471)
 77 >1gc5_A ADP-dependent glucokin  35.5      22 0.00066   15.5   2.0   87  113-208    73-168 (336)
 78 >1mo0_A TIM, triosephosphate i  35.4      22 0.00064   15.6   1.9   38  191-234   229-266 (275)
 79 >1xfc_A Alanine racemase; alph  34.8      28 0.00083   14.8   3.9   23  126-148    50-72  (222)
 80 >1l2l_A ADP-dependent glucokin  34.3     8.9 0.00026   18.2  -0.2   65  135-208    94-159 (327)
 81 >2gou_A Oxidoreductase, FMN-bi  34.2      29 0.00085   14.8   4.3   71  190-266   199-277 (323)
 82 >2jbm_A Nicotinate-nucleotide   33.3      29 0.00086   14.7   2.3   63  202-269    47-109 (113)
 83 >2i9e_A Triosephosphate isomer  33.2      18 0.00052   16.2   1.2   66  150-221   171-236 (259)
 84 >1n7k_A Deoxyribose-phosphate   32.9      30 0.00089   14.6   8.0   76  189-267   141-219 (234)
 85 >1m6j_A TIM, TPI, triosephosph  31.6      32 0.00093   14.5   3.1   19   43-61     83-101 (261)
 86 >1h2e_A Phosphatase, YHFR; hyd  29.7      34   0.001   14.3   3.2   83  184-267    83-168 (207)
 87 >2hmc_A AGR_L_411P, dihydrodip  29.1      35   0.001   14.2   3.8   32  238-269   200-232 (235)
 88 >3fem_A Pyridoxine biosynthesi  27.4      37  0.0011   14.1   2.0   29  239-267   204-233 (297)
 89 >1ynp_A Oxidoreductase, AKR11C  27.2      37  0.0011   14.0   2.8   16  155-170   113-128 (317)
 90 >1tqj_A Ribulose-phosphate 3-e  25.9      39  0.0012   13.9   3.1   33  237-269   169-201 (230)
 91 >1vd6_A Glycerophosphoryl dies  25.8      40  0.0012   13.8   2.1   38  239-276   184-221 (224)
 92 >2hwg_A Phosphoenolpyruvate-pr  25.1      38  0.0011   14.0   1.7  214   48-276    25-275 (318)
 93 >1vfs_A Alanine racemase; TIM-  25.0      41  0.0012   13.7   4.5  138  126-267    50-210 (223)
 94 >1ad1_A DHPS, dihydropteroate   24.8      41  0.0012   13.7   5.5  198   42-268    20-239 (266)
 95 >1geq_A Tryptophan synthase al  24.7      41  0.0012   13.7   3.8   64  202-267   149-218 (248)
 96 >3l12_A Putative glycerophosph  24.7      42  0.0012   13.7   1.9   37  239-275   209-245 (256)
 97 >1wa3_A 2-keto-3-deoxy-6-phosp  24.5      42  0.0012   13.7   4.0   29  239-267   148-176 (205)
 98 >3co8_A Alanine racemase; prot  24.3      42  0.0013   13.7   4.1   74  192-267   125-207 (220)
 99 >2zbt_A Pyridoxal biosynthesis  24.0      43  0.0013   13.6   4.3   37  232-268   200-237 (297)
100 >2j27_A Triosephosphate isomer  24.0      43  0.0013   13.6   2.9   77  148-233   172-248 (250)
101 >1tv5_A Dhodehase, dihydroorot  23.7      43  0.0013   13.6   5.4   79  189-267   251-347 (390)
102 >2dy3_A Alanine racemase; alph  23.5      44  0.0013   13.6   3.8   78  188-267   118-205 (216)
103 >1pii_A N-(5'phosphoribosyl)an  23.4      29 0.00086   14.7   0.9   37  230-267   197-234 (240)
104 >1bwv_A Rubisco, protein (ribu  23.2      40  0.0012   13.8   1.5   74  126-208    32-112 (265)
105 >1ea0_A Glutamate synthase [NA  23.0      45  0.0013   13.5   4.7   71  201-271   230-316 (412)
106 >1eye_A DHPS 1, dihydropteroat  21.7      47  0.0014   13.3   4.1  138   42-189    23-179 (280)
107 >2v5b_A Triosephosphate isomer  21.3      48  0.0014   13.3   4.0   20  126-145    68-87  (244)
108 >2ez2_A Beta-tyrosinase, tyros  21.1      39  0.0012   13.9   1.2   41   89-131    46-94  (198)
109 >2fli_A Ribulose-phosphate 3-e  21.0      49  0.0014   13.2   2.6   35  234-268   163-197 (220)
110 >1vbg_A Pyruvate,orthophosphat  21.0      49  0.0014   13.2   3.1   29  241-269   346-376 (392)
111 >1aw2_A Triosephosphate isomer  20.9      49  0.0015   13.2   2.4   17   44-60     79-95  (256)
112 >3gwq_A D-serine deaminase; YP  20.8      49  0.0015   13.2   2.2   33  146-179    40-72  (202)
113 >1q0q_A 1-deoxy-D-xylulose 5-p  20.8      38  0.0011   14.0   1.0   20   87-106    39-59  (161)
114 >3kl7_A Putative metal-depende  20.8      36  0.0011   14.1   0.9   29  118-147    70-98  (124)
115 >1qop_A Tryptophan synthase al  20.7      50  0.0015   13.2   2.4   38  228-267   194-232 (268)
116 >1req_B Methylmalonyl-COA muta  20.6      49  0.0014   13.2   1.6   32   93-145    61-92  (163)
117 >2r91_A 2-keto-3-deoxy-(6-phos  20.5      50  0.0015   13.2   5.4   20  249-268   176-195 (286)
118 >2hsa_B 12-oxophytodienoate re  20.3      50  0.0015   13.1   4.3  142  124-267   159-346 (402)
119 >3big_A Fructose-1,6-bisphosph  20.1      47  0.0014   13.4   1.4  111  140-267     3-117 (160)

No 1  
>>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing, zinc; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... (A:)
Probab=100.00  E-value=0  Score=795.06  Aligned_cols=371  Identities=55%  Similarity=0.920  Sum_probs=363.0

Q ss_pred             CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf             88704999976499327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r    2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH   81 (378)
Q Consensus         2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh   81 (378)
                      ...|+|++++++++||+|+|.++||+|+||+||||+++|+|||||||++++++.+++++|+||++++|+.+.+++.||+|
T Consensus        11 ~m~~~f~i~~~~~~aR~G~l~~~~~~i~TP~fl~vt~~G~vp~Lt~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~   90 (386)
T 3bld_A           11 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH   90 (386)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEETTEEEEESEECCEESSSSBTTCCHHHHHHTTCSCEEECHHHHHHTTCHHHHHHTTCHH
T ss_pred             CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCHHHHHHCCCCH
T ss_conf             89726999966685225899979977448917634787758857999999728988951166775478707777448820


Q ss_pred             HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH
Q ss_conf             11015772241145432101221022333310210144541587129999999873289779960121332211589999
Q gi|254780178|r   82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR  161 (378)
Q Consensus        82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~  161 (378)
                      +|++|+++++||||+||++|++...+++++||.|+++.+|+++.+|||+|+++|+.|||||+|+||+++++..++|++++
T Consensus        91 ~f~~~~~~~lt~sg~~q~~~~~~~~~~~~~gv~~~~~~~gg~~~lt~e~~~~~~~~i~pDi~v~Ldd~~~~~~~~k~~~~  170 (386)
T 3bld_A           91 SFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS  170 (386)
T ss_dssp             HHHTCCSCEEECCSHHHHHC------CBTTBCCCCC--------CCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH
T ss_pred             HHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHH
T ss_conf             33138876112555555444123566568834883676894165188999999997499888753435788861778999


Q ss_pred             HHHHHHHHHHHHHHHHCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             99988999999988513588----86055402344436689999887642223467664135675167899899989850
Q gi|254780178|r  162 AMELSLRWAERSLVAFGNQP----GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI  237 (378)
Q Consensus       162 sv~rT~~w~~~~~~~~~~~~----~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~  237 (378)
                      ||+||.+|+++|+++++..+    .+.+||+||||.++|||++|++++.+++++||+|||+.++++.+++.++|.++.+.
T Consensus       171 sv~rT~~w~~~~~~~~~~~~~~~~~~~~~~~iqGg~~~dlr~~s~~~l~~~~~~g~~i~g~~~~~~~~~~~~~i~~~~~~  250 (386)
T 3bld_A          171 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPM  250 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             99999999999999876122116774051363787789999999999985799877215866676177889998751434


Q ss_pred             CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH
Q ss_conf             77033100254101899999985389836620000023320024562100210123223688559866981336889899
Q gi|254780178|r  238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY  317 (378)
Q Consensus       238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY  317 (378)
                      ||++|||||+|+|+|++|+.+|++|||+|||++|++.||+|+|+|++|.+||++.+|++|++||+++|+||+|++|||||
T Consensus       251 lp~~kp~~l~G~g~P~~il~~v~~GvD~fDs~~p~~~A~~G~alt~~~~~~L~~~~~~~d~~Pi~~~C~C~~C~~~traY  330 (386)
T 3bld_A          251 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY  330 (386)
T ss_dssp             SCTTSCEEETTCCCHHHHHHHHTTTCCEEC----------CEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH
T ss_pred             CCCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCCHHHHCCCEECCCCCEEECCHHHCCCCCCCCCCCCCHHHCCCCHHH
T ss_conf             66553146458998899999998299731146745254278566269854605364435799869799991226259999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
Q ss_conf             9886857850899999999999999999999999985998999999999853279
Q gi|254780178|r  318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGD  372 (378)
Q Consensus       318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~  372 (378)
                      ||||++++||+|.+||++||+++|.+||+.||++|++|+|++|+++|+++|..++
T Consensus       331 lhHL~~~~E~~~~~LL~~HNl~~~~~~~~~iR~~i~~~~l~~~~~~~~~~~~~~~  385 (386)
T 3bld_A          331 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFARN  385 (386)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC---
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf             9777547846899999999999999999999999985999999999999960689


No 2  
>>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} (A:1-102,A:135-381)
Probab=100.00  E-value=0  Score=795.62  Aligned_cols=339  Identities=42%  Similarity=0.731  Sum_probs=333.0

Q ss_pred             CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH
Q ss_conf             88704999976499327999878875405857410686856886889998609989993226657387689986527420
Q gi|254780178|r    2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH   81 (378)
Q Consensus         2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh   81 (378)
                      ++.|+|++++++++||+|.|.|+||.|+||+||||+|.|+||+++|++++++|+|++|+|||||+++||.++++++||||
T Consensus        10 ~~~~~~~~~~~~~~ar~~~~~~~~g~i~tp~f~pv~t~~~~k~~~~~~~~~~~~~~~l~ntyhl~~~p~~~~~~~~ggl~   89 (349)
T 2ash_A           10 HHHMEFEVKKTFGKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKPGVEIIKLHRGLH   89 (349)
T ss_dssp             ---CEEEEEEEETTEEEEEEEETTEEEEESEEEEEESSSSCTTCCHHHHHHHTCSCEEECCHHHHHTTCHHHHHHTTSHH
T ss_pred             CCCEEEEEEEEECCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHEECCCHHHHHHHCCCC
T ss_conf             55159999852186325899989987619968760577858847999999728988831214440078605668618853


Q ss_pred             HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH
Q ss_conf             11015772241145432101221022333310210144541587129999999873289779960121332211589999
Q gi|254780178|r   82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR  161 (378)
Q Consensus        82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~  161 (378)
                      +||+|++|||||                                 +||++|++|+.+||||+|+||+++++++++|++++
T Consensus        90 ~f~~~~~~~~td---------------------------------spe~~i~iq~~ig~DI~i~LDd~tp~~~~~k~~~~  136 (349)
T 2ash_A           90 NFMGWKRPILTD---------------------------------SPEISMEVQIALGSDICMVFDHCPVPDADYEEVKE  136 (349)
T ss_dssp             HHHTCCSCEEEC---------------------------------CHHHHHHHHHHHTCSEEECCCCCCC--CCHHHHHH
T ss_pred             CHHHHCCCEEEE---------------------------------CHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH
T ss_conf             123405824530---------------------------------35876677750587088613545553210578999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             99988999999988513588860554023444366899998876422234676641356751678998999898507703
Q gi|254780178|r  162 AMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE  241 (378)
Q Consensus       162 sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~  241 (378)
                      ||+||++|+++|++++.+. +|++|||||||.+.|||++|++++.+++++||+|||++++++++++.++|.++.+.||++
T Consensus       137 sv~rT~rWl~~~l~~~~~~-~~~lfgiiqGG~~~dLR~~s~~~l~~~~~~g~aigGl~~ge~~~~~~~ii~~~~~~LP~~  215 (349)
T 2ash_A          137 ATERTYRWALRSKKAFKTE-NQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPED  215 (349)
T ss_dssp             HHHHHHHHHHHHHHHCCCS-SCEEEEEECCTTCHHHHHHHHHHHHTTCCSEEEECSCSSSSCHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHHHHHCCCC-CCEEECEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             8888888866303330477-732765289974254688999998721567055440224433210455543422213433


Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf             31002541018999999853898366200000233200245621002101232236885598669813368898999886
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL  321 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL  321 (378)
                      ||||++|+|+|++|+.+|++|||+|||++|+|.||+|.|||++|++||++.+|++|++||+++|+||||++|||||||||
T Consensus       216 kpr~l~G~g~P~~Il~~v~~GvDlFD~~~p~r~Ar~G~alt~~g~~~L~~~~~~~Df~Pi~~~C~C~tC~~yTRAYLhHL  295 (349)
T 2ash_A          216 KPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTWNGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHL  295 (349)
T ss_dssp             SCEEECSCCCHHHHHHHHTTTCCEEEESHHHHHHHTTEEEETTEEEETTSGGGTTCCSCSCTTCCSHHHHHCCHHHHHHH
T ss_pred             CCEECCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCHHHCCCCHHHHHHH
T ss_conf             00323466998999999983698354031111126871774143200012300201788688989822241299999867


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             85785089999999999999999999999998599899999999985327998
Q gi|254780178|r  322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIP  374 (378)
Q Consensus       322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~  374 (378)
                      ++++||++.+||++||+++|.+||+.||++|++|+|++|+++|+.+|++++.|
T Consensus       296 l~~~E~l~~~LLtiHNl~~~~~l~~~iR~aI~~g~l~~~~~~f~~~~~~~~~~  348 (349)
T 2ash_A          296 FDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVVEVYSSGGVN  348 (349)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTC-----
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             42680789999999999999999999999998599999999999998548998


No 3  
>>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} (A:1-358)
Probab=100.00  E-value=0  Score=672.32  Aligned_cols=335  Identities=24%  Similarity=0.345  Sum_probs=320.0

Q ss_pred             CCCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCC
Q ss_conf             98870499997649932799987887540585741068685688688999860998999322665738768998652742
Q gi|254780178|r    1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGL   80 (378)
Q Consensus         1 m~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGl   80 (378)
                      |++||+|+|.+++++||+|+|.++||+|+||+||||+++|+++ ++|+++++++++++++|+||++++|+.+.+++.+||
T Consensus         4 ~~~~m~F~v~~~~~~aR~G~L~~~~~~i~TP~fip~t~~g~~~-lt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl   82 (358)
T 1iq8_A            4 GDKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGFEIIITNSYIIYKDEELRRKALELGI   82 (358)
T ss_dssp             --CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCS-SCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEECCCEEE-ECHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHCCCH
T ss_conf             7861699998643862438998199236189463444385403-479999983899997102224658646665640887


Q ss_pred             HHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHH
Q ss_conf             01101577224114543210122102233331021014454158712999999987328977996012133221158999
Q gi|254780178|r   81 HKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELK  160 (378)
Q Consensus        81 h~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~  160 (378)
                      |+|++|+++++||||+||++|+|..                   .+|||+++++|+.+||||+++||+++++++++|+++
T Consensus        83 ~~f~~~~~~iltdSg~~~~~s~G~~-------------------~lt~e~~~~~~~~~~pDi~v~ldd~~~~~~~~k~~~  143 (358)
T 1iq8_A           83 HRMLDYNGIIEVDSGSFQLMKYGSI-------------------EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAV  143 (358)
T ss_dssp             HHHHTCCSEEEEECSTTHHHHSSCC-------------------SSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHH
T ss_pred             HHHCCCCCCEECCCCHHHHEECCCC-------------------CCCCHHHEEEHHHCCCCCEEECCCCCCCCCCHHHHH
T ss_conf             8870899973616754776166554-------------------668543266520268760677667789997799999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHC
Q ss_conf             999988999999988513588860554023444366899998876422234676641356751678---99899989850
Q gi|254780178|r  161 RAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPI  237 (378)
Q Consensus       161 ~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~  237 (378)
                      ++|+||.+|+++|+..+    .+++||+||||.+.|+|++|++++.+.+++||+++|++.+++.++   +.+++.++++.
T Consensus       144 k~v~rT~~w~~~~~~~~----~~~~~~~i~Gg~~~~lr~~s~~~~~~~~~~~~~i~g~~~~~~~~~~~~ll~~i~~~~~~  219 (358)
T 1iq8_A          144 KELEITLSRAREAEEIK----EIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMA  219 (358)
T ss_dssp             HHHHHHHHHHHHHHHHC----CSCBBCCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----CCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99999999999876510----04544233266655799999998751899777755656554257899999998751135


Q ss_pred             CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH
Q ss_conf             77033100254101899999985389836620000023320024562100210123223688559866981336889899
Q gi|254780178|r  238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY  317 (378)
Q Consensus       238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY  317 (378)
                      ||++||||++|+|+|++|+.+|++|||+|||++|++.|++|+|+|++|.+||++.+|.        +|+||+|++|||||
T Consensus       220 lp~~kp~~l~g~g~P~~i~~~v~lGvD~fDs~~~~~~a~~G~~l~~~~~i~l~~~~~~--------~C~C~~C~~~tray  291 (358)
T 1iq8_A          220 LRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYF--------PCSCPVCSKYTPQE  291 (358)
T ss_dssp             SCTTSCEEETTCCCGGGHHHHHHTTCCEEEESHHHHHHHTTEEEETTEEEEGGGCSSC--------CCCSTTTTTCCHHH
T ss_pred             CCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCC--------CCCCHHHCCCCHHH
T ss_conf             8765540004778667788998328873033117788616823678886215346789--------99981213058999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf             98868578508999999999999999999999999859989999999998532
Q gi|254780178|r  318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK  370 (378)
Q Consensus       318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~  370 (378)
                      ||||++++|+   +||++||+++|.+|+++||+||++|+|++|+++|.+.|+.
T Consensus       292 ihhL~~~~e~---~ll~~HNl~~~~~~~~~iR~~i~~~~~~~~~~~~~~~~~~  341 (358)
T 1iq8_A          292 LREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPK  341 (358)
T ss_dssp             HTTSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
T ss_conf             9987536740---0899999999999999999999869999999999876989


No 4  
>>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} (A:103-134)
Probab=98.21  E-value=4e-07  Score=67.52  Aligned_cols=32  Identities=59%  Similarity=0.916  Sum_probs=30.0

Q ss_pred             CCCCCCHHHHCCCCCCCCEEEECCCCCCEEEEC
Q ss_conf             543210122102233331021014454158712
Q gi|254780178|r   95 GGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVS  127 (378)
Q Consensus        95 GgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~lt  127 (378)
                      |||||+||++. +|+|+||.|+||+||+++++|
T Consensus         1 GGFQvfSL~~l-ri~eeGV~F~S~idGs~~~lt   32 (32)
T 2ash_A            1 GGFQVFSLPKI-RIDDEGVVFRSPIDGSKVFLN   32 (32)
T ss_dssp             CHHHHHTSTTC-EECSSCEEEECTTTCCEEEEC
T ss_pred             CCCCCCCCCCC-CCCCCCEEEEECCCCCEEECC
T ss_conf             76663225544-425685699305688146428


No 5  
>>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472)
Probab=92.91  E-value=0.71  Score=25.57  Aligned_cols=141  Identities=13%  Similarity=0.085  Sum_probs=85.6

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554-02344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqGG~~~dLR~~Sa~~l~~  207 (378)
                      +.++..-..-+-|++-.+|......    .    ++...+++++.    .. .-+.-+. ..-.....|.-...++++.+
T Consensus       120 ~~f~~~s~~~~~~~~ri~~~~n~~~----~----~~~~i~~ak~~----G~-~v~~~i~~~~~~~~~~e~~~~~a~~l~~  186 (359)
T 1rqb_A          120 DRFVDKSAENGXDVFRVFDAXNDPR----N----XAHAXAAVKKA----GK-HAQGTICYTISPVHTVEGYVKLAGQLLD  186 (359)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCCTH----H----HHHHHHHHHHT----TC-EEEEEEECCCSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHH----H----HHHHHHHHHHC----CC-EEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999985138873476788999----9----88889999956----98-7999996167878799999999767773


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf             223467664135675167899899989850770331002541----018999999853898366200000233200245
Q gi|254780178|r  208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT  282 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t  282 (378)
                      .+.+-+.|.--+....-+...+++..+...++++.|..+++-    --....+.|++.|+|.+|++.--.-.|.|.+=|
T Consensus       187 ~G~d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~~i~i~~H~Hnt~Gla~an~laAi~AGad~IDtai~G~G~~tGn~~t  265 (359)
T 1rqb_A          187 XGADSIALXDXAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLXKAIEAGVDVVDTAISSXSLGPGHNPT  265 (359)
T ss_dssp             TTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH
T ss_conf             6976798715765312779999999999865754331231246064799999999985988983445666788789858


No 6  
>>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid biosynthesis, cytoplasm, lysine biosynthesis; HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A* (A:1-277)
Probab=91.29  E-value=1.1  Score=24.32  Aligned_cols=148  Identities=6%  Similarity=-0.012  Sum_probs=92.4

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             9999998732897799601213-----32211589999999889999999885135888605540234443668999988
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECL-----ALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAE  203 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~-----~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~  203 (378)
                      ...++.....+.+....+..+.     ....+.++..+.+..+.+.+++.     ...-+.-+-.+.+....+.-...++
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~v~~a~~~-----g~~v~~~~~~~~~~~~~~~~~~~~~  151 (277)
T 2ztj_A           77 LDAAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREA-----APHVEVRFSAEDTFRSEEQDLLAVY  151 (277)
T ss_dssp             HHHHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHH-----CTTSEEEEEETTTTTSCHHHHHHHH
T ss_pred             CCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCHHHH
T ss_conf             51456677527505899713648988876646999999999999999972-----7750577501224445421101332


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCC
Q ss_conf             76422234676641356751678998999898507703310025-----4101899999985389836620000023320
Q gi|254780178|r  204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHG  278 (378)
Q Consensus       204 ~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G  278 (378)
                      .+.+.+.+.+.|.--.-...-++..+++..+...++++.|.-++     |.+ ....+.|+..|+|.+|++..-.-.|.|
T Consensus       152 ~~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~~~l~~H~Hn~~Gla-~An~laAi~aG~~~vd~s~~G~G~~~G  230 (277)
T 2ztj_A          152 EAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCA-IANAYEAIEAGATHVDTTILGIGERNG  230 (277)
T ss_dssp             HHHGGGCSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCH-HHHHHHHHHTTCCEEEEBGGGCSSTTC
T ss_pred             HHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf             1012431146751533331001068899999986055776026505067667-677999876341113534558885112


Q ss_pred             CCCC
Q ss_conf             0245
Q gi|254780178|r  279 LAFT  282 (378)
Q Consensus       279 ~~~t  282 (378)
                      .+=+
T Consensus       231 n~~~  234 (277)
T 2ztj_A          231 ITPL  234 (277)
T ss_dssp             BCBH
T ss_pred             HHHH
T ss_conf             2336


No 7  
>>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:1-273)
Probab=90.19  E-value=1.4  Score=23.67  Aligned_cols=96  Identities=8%  Similarity=-0.034  Sum_probs=70.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH----HHHHHHHHHHCC
Q ss_conf             4023444366899998876422234676641356751678998999898507703310025410----189999998538
Q gi|254780178|r  187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG----TPDDILKSVSYG  262 (378)
Q Consensus       187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G----~P~~i~~~v~~G  262 (378)
                      ..--++..++--.+.++.+.+.+.+.+.+.--.....-+++.+++..+...+|.+.|.-+++--    -....+.++..|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~i~l~~H~Hnd~GlA~aN~l~Ai~aG  219 (273)
T 1nvm_A          140 LMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEG  219 (273)
T ss_dssp             EESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf             40245665234457888888608631102542024687999999999998627755404773588883999999999809


Q ss_pred             CCEEEECCEEECCCCCCCCC
Q ss_conf             98366200000233200245
Q gi|254780178|r  263 VDMFDCVMPTRAGRHGLAFT  282 (378)
Q Consensus       263 vDlFD~~~ptr~Ar~G~~~t  282 (378)
                      +|.+|++..-.-.|.|.+=+
T Consensus       220 a~~vd~sl~GlG~~aGN~~~  239 (273)
T 1nvm_A          220 CDRVDASLAGMGAGAGNAPL  239 (273)
T ss_dssp             CCEEEEBGGGCSSTTCBCBH
T ss_pred             CCEEEEECCCCCCCCCCHHH
T ss_conf             88998522358998785309


No 8  
>>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:66-396,A:510-576)
Probab=87.86  E-value=2  Score=22.60  Aligned_cols=89  Identities=16%  Similarity=0.100  Sum_probs=62.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCE
Q ss_conf             444366899998876422234676641356751678998999898507703310025-----410189999998538983
Q gi|254780178|r  191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDl  265 (378)
                      +....|.-...++++.+.+.+-+.|.--+....-+...+++..+...+|. .|.+++     |. -....+.|++.|+|+
T Consensus       191 ~~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~li~~lk~~~p~-i~i~~H~Hnt~Gl-a~An~laAi~aGad~  268 (398)
T 3bg3_A          191 TKYSLQYYMGLAEELVRAGTHILCIXDMAGLLKPTACTMLVSSLRDRFPD-LPLHIHTHDTSGA-GVAAMLACAQAGADV  268 (398)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTT-CCEEEECCCTTSC-HHHHHHHHHHTTCSE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCH-HHHHHHHHHHHCCCE
T ss_conf             76789999999999986399789863650026799999999999741787-5599965765454-899999999839888


Q ss_pred             EEECCEEECCCCCCCC
Q ss_conf             6620000023320024
Q gi|254780178|r  266 FDCVMPTRAGRHGLAF  281 (378)
Q Consensus       266 FD~~~ptr~Ar~G~~~  281 (378)
                      +|++..-.-.+-|.+=
T Consensus       269 vD~si~glg~~tGn~~  284 (398)
T 3bg3_A          269 VDVAADSMSGMTSQPS  284 (398)
T ss_dssp             EEEBCGGGCSTTSCCB
T ss_pred             EEEEECCCCCCCCCCC
T ss_conf             8553146778778844


No 9  
>>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A (A:)
Probab=87.68  E-value=0.79  Score=25.27  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=14.6

Q ss_pred             HEECCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             100254101899999985389836620
Q gi|254780178|r  243 PHYLMGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      ++...-.|.-..++.....|.+-+-|.
T Consensus       179 ~~~~~~~G~~~~~~~~~~~G~~G~~~~  205 (292)
T 2ojp_A          179 DDFVLLSGDDASALDFMQYGGHGVISV  205 (292)
T ss_dssp             TTSBCEESCGGGHHHHHHTTCCEEEES
T ss_pred             CCEEEEECCHHHCCCCCCCCCEEEEEE
T ss_conf             975996064110344000684178840


No 10 
>>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} (X:)
Probab=87.33  E-value=2.1  Score=22.40  Aligned_cols=150  Identities=5%  Similarity=-0.083  Sum_probs=86.1

Q ss_pred             HHHHHHHHHCCCCEEEEE---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHH
Q ss_conf             999999873289779960---1213322115899999998899999998851358886055402-344436689999887
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL---DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGGDNINLRSFSAER  204 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L---D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG~~~dLR~~Sa~~  204 (378)
                      ...++.....+.+....+   ++.-....-.+-.+.++++.....+.+    ....-..-|+.. .+....+--.+.++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a----~~~g~~~~~~~~~~~~~~~~~~~~~~~~  158 (293)
T 3ewb_X           83 DRAEEALKDAVSPQIHIFLATSDVHXEYKLKXSRAEVLASIKHHISYA----RQKFDVVQFSPEDATRSDRAFLIEAVQT  158 (293)
T ss_dssp             HHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHH----HTTCSCEEEEEETGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             999999875599779999730799888875165999999999999887----5077679981133667634568999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH--HHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCC
Q ss_conf             6422234676641356751678998999898507703--310025-----410189999998538983662000002332
Q gi|254780178|r  205 LKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE--RPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRH  277 (378)
Q Consensus       205 l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~--kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~  277 (378)
                      +.+.+.+.+.+.--.-...-+.+.+++..+...+|..  .+..++     |. -....+.|++.|+|.+|++..-.-.|.
T Consensus       159 ~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~~~~~i~~H~Hnd~Gl-a~An~laAi~aG~~~vd~tv~GlG~~~  237 (293)
T 3ewb_X          159 AIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGX-ATANALAAIENGARRVEGTINGIGERA  237 (293)
T ss_dssp             HHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSC-HHHHHHHHHHTTCCEEEEBGGGCCTTT
T ss_pred             HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             9986997998335223358378999999999972320270577616884436-999999999839888955124446544


Q ss_pred             CCCCCC
Q ss_conf             002456
Q gi|254780178|r  278 GLAFTR  283 (378)
Q Consensus       278 G~~~t~  283 (378)
                      |.+=+-
T Consensus       238 Gn~~le  243 (293)
T 3ewb_X          238 GNTALE  243 (293)
T ss_dssp             CBCBHH
T ss_pred             CCCCHH
T ss_conf             683099


No 11 
>>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219)
Probab=86.55  E-value=1.5  Score=23.39  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=9.8

Q ss_pred             CHHHHHHHHHHHCCCCEEEE
Q ss_conf             10189999998538983662
Q gi|254780178|r  249 VGTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       249 ~G~P~~i~~~v~~GvDlFD~  268 (378)
                      .|.-..++....+|.|-+-+
T Consensus       196 ~G~~~~~~~~l~~G~~G~is  215 (219)
T 1xky_A          196 SGDDGLTLPAMAVGAKGIVS  215 (219)
T ss_dssp             ESSGGGHHHHHHTTCCEEEE
T ss_pred             ECCCCCCCHHHHCCCCCEEE
T ss_conf             57500045498759973354


No 12 
>>3ler_A DHDPS, dihydrodipicolinate synthase; TIM barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MCL MSE; 1.84A {Campylobacter jejuni subsp} (A:)
Probab=85.92  E-value=2.3  Score=22.16  Aligned_cols=99  Identities=14%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133-22115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      .+.++++..-|.|-++.+--.-. +.-+.++..+-++.+       .++-....-..+.|+  |+...+.-.+-++...+
T Consensus        31 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~Ls~~Er~~v~~~~-------~~~~~~~~~~vi~gv--~~~~t~~~i~~a~~A~~  101 (301)
T 3ler_A           31 ARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIA-------VETCKGTKVKVLAGA--GSNATHEAVGLAKFAKE  101 (301)
T ss_dssp             HHHHHHHHTTTCCEEETTSTTTTGGGSCHHHHHHHHHHH-------HHHHTTSSCEEEEEC--CCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH-------HHHHCCCCCEEEEEC--CCCHHHHHHHHHHHHHH
T ss_conf             999999997599989978122026658999999999999-------998558998299978--85209999999999997


Q ss_pred             HHHHHHHHHCCCCC-CCHHHHHHHHHHHHH
Q ss_conf             22346766413567-516789989998985
Q gi|254780178|r  208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLP  236 (378)
Q Consensus       208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~  236 (378)
                      .+.++..+.--... .+.+++.+-...+.+
T Consensus       102 ~Gad~ilv~~P~~~~~~~~~i~~~~~~i~~  131 (301)
T 3ler_A          102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQ  131 (301)
T ss_dssp             TTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf             599988735888889899999999999986


No 13 
>>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} (A:1-228)
Probab=84.56  E-value=2.9  Score=21.50  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=19.5

Q ss_pred             HHEECCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             31002541018999999853898366200
Q gi|254780178|r  242 RPHYLMGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .|....-.|.-..++.....|.|-+-+..
T Consensus       185 ~~~~~v~~G~d~~~~~~l~~G~~G~is~~  213 (228)
T 3b4u_A          185 HGDLAILIGDERDLARGVRLGGQGAISGV  213 (228)
T ss_dssp             HTTSEEEECCHHHHHHHHHTTCCEEEESG
T ss_pred             CCCCCCCCCCCCCCCHHHCCCCCEEECCH
T ss_conf             44432346864322313326887253537


No 14 
>>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243)
Probab=83.98  E-value=1.7  Score=23.04  Aligned_cols=124  Identities=15%  Similarity=0.066  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             999999987328977996012133-2211589999999889999999885135888605540234443668999988764
Q gi|254780178|r  128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK  206 (378)
Q Consensus       128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~  206 (378)
                      -.+.++++...|.|-++...-.-. ..-+.++.++-++.+   .+.+     ...-..+.|+  |+...+.-.+-++...
T Consensus        23 ~~~~i~~l~~~Gv~gi~v~Gt~GE~~~lt~~Er~~l~~~~---~~~~-----~~~~~vi~gv--~~~~~~~~i~~a~~a~   92 (243)
T 2rfg_A           23 LAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALV---AEQA-----QGRVPVIAGA--GSNNPVEAVRYAQHAQ   92 (243)
T ss_dssp             HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHH---HHHH-----TTSSCBEEEC--CCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH---HHHC-----CCCCEEEEEC--CCCCHHHHHHHHHHHH
T ss_conf             9999999997799989968426563148999999999999---9991-----8984099734--5446999999999999


Q ss_pred             HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEEC----CCC-HHHHHHHHHHHC
Q ss_conf             222346766413567-5167899899989850770331002----541-018999999853
Q gi|254780178|r  207 ELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYL----MGV-GTPDDILKSVSY  261 (378)
Q Consensus       207 ~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l----~G~-G~P~~i~~~v~~  261 (378)
                      +.+.++..+.-.... .+.+++.+-...+.+..+..--.|-    .|+ -+|..+..+.+.
T Consensus        93 ~~G~d~i~~~~P~~~~~~~~~i~~~~~~ia~a~~~pi~iyn~P~~~g~~~~~~~~~~l~~~  153 (243)
T 2rfg_A           93 QAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAAL  153 (243)
T ss_dssp             HHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTS
T ss_pred             HCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC
T ss_conf             8499976426877789899999999999975379858999457534688899999998407


No 15 
>>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} (A:1-217)
Probab=83.74  E-value=3.1  Score=21.27  Aligned_cols=18  Identities=11%  Similarity=0.169  Sum_probs=8.5

Q ss_pred             HHHHHHHHHCCCCEEEEE
Q ss_conf             999999873289779960
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L  146 (378)
                      ++.++++..-|.|-++.+
T Consensus        36 ~~~i~~l~~~Gv~gi~v~   53 (217)
T 3d0c_A           36 DDNVEFLLQNGIEVIVPN   53 (217)
T ss_dssp             HHHHHHHHHTTCSEECTT
T ss_pred             HHHHHHHHHCCCCEEEEC
T ss_conf             999999997699989968


No 16 
>>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219)
Probab=83.21  E-value=2.4  Score=21.97  Aligned_cols=18  Identities=11%  Similarity=-0.158  Sum_probs=7.7

Q ss_pred             HHHHHHHHHCCCCEEEEE
Q ss_conf             999999873289779960
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L  146 (378)
                      ++.++++..-|.|-++..
T Consensus        38 ~~~i~~~~~~Gv~gi~v~   55 (219)
T 1xxx_A           38 ARLANHLVDQGCDGLVVS   55 (219)
T ss_dssp             HHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHCCCCEEEEC
T ss_conf             999999997799989978


No 17 
>>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} (A:)
Probab=82.23  E-value=2.6  Score=21.77  Aligned_cols=17  Identities=12%  Similarity=0.104  Sum_probs=6.5

Q ss_pred             HHHHHHHHCCCCEEEEE
Q ss_conf             99999873289779960
Q gi|254780178|r  130 ESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       130 ~~i~~q~~lg~DI~~~L  146 (378)
                      +.+++...-|.|-++.+
T Consensus        25 ~~i~~l~~~Gv~gl~~~   41 (294)
T 2ehh_A           25 NLIEFHVDNGTDAILVC   41 (294)
T ss_dssp             HHHHHHHTTTCCEEEES
T ss_pred             HHHHHHHHCCCCEEEEC
T ss_conf             99999997699989978


No 18 
>>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=82.18  E-value=3.6  Score=20.87  Aligned_cols=152  Identities=11%  Similarity=-0.033  Sum_probs=85.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH
Q ss_conf             9999998732897799601213322115899999998899999998851358886055402-344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG~~~dLR~~Sa~~l~~  207 (378)
                      ...++.....+.+++..+....+.....+ ..+..+....++.++.+..+...-..-|.+. -.-..++.-.+-++.+.+
T Consensus        84 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~  162 (325)
T 3eeg_A           84 NIAGEALRFAKRSRIHTGIGSSDIHIEHK-LRSTRENILEXAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARXVEAVIE  162 (325)
T ss_dssp             HHHHHHHTTCSSEEEEEEEECSHHHHC-----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf             65699998558857998514549999988-76668889999999999887605324423565443069999999999998


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--HHHHEECCCCH----HHHHHHHHHHCCCCEEEECCEEECCCCCCCC
Q ss_conf             22346766413567516789989998985077--03310025410----1899999985389836620000023320024
Q gi|254780178|r  208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILP--VERPHYLMGVG----TPDDILKSVSYGVDMFDCVMPTRAGRHGLAF  281 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP--~~kPr~l~G~G----~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~  281 (378)
                      .+.+.+.+.--.-...-++..+++..+...++  ++.|..+++--    -....+.|+..|+|.+|++..-.-.|.|.+=
T Consensus       163 ~g~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~p~~~i~~H~Hnd~Gla~An~l~A~~aGa~~vd~si~G~G~r~Gn~~  242 (325)
T 3eeg_A          163 AGADVVNIPDTTGYXLPWQYGERIKYLXDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIGERAGNTA  242 (325)
T ss_dssp             HTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCCSTTCCCB
T ss_pred             CCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC
T ss_conf             49989995155665531167889999987304888624788754645654688999996474132356455577655564


No 19 
>>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:1-370)
Probab=81.85  E-value=2.4  Score=22.03  Aligned_cols=81  Identities=9%  Similarity=-0.082  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH--HHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             887642223467664135675167899899989850770--331002541----01899999985389836620000023
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV--ERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~--~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      ++.+.+.+.+-+.|.--.....-+...+++..+...+|.  +.|.++++-    --....+.|+..|+|.+|++.--.-.
T Consensus       238 a~~~~~~g~~~i~i~Dt~G~~~P~~~~~lv~~l~~~~~~~~~i~i~~H~Hn~~Gla~An~laA~~aGa~~Vd~sl~G~G~  317 (370)
T 1sr9_A          238 VIAPTPERPIIFNLPATVEXTTPNVYADSIEWXSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE  317 (370)
T ss_dssp             HHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS
T ss_pred             HCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             56332269469981554454301578999999986057877714999625415566777899887666315621014666


Q ss_pred             CCCCCCC
Q ss_conf             3200245
Q gi|254780178|r  276 RHGLAFT  282 (378)
Q Consensus       276 r~G~~~t  282 (378)
                      |-|.+=+
T Consensus       318 ~tGn~~l  324 (370)
T 1sr9_A          318 RTGNVCL  324 (370)
T ss_dssp             TTCBCBH
T ss_pred             CCCCCCH
T ss_conf             6688448


No 20 
>>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=81.25  E-value=2.9  Score=21.49  Aligned_cols=101  Identities=12%  Similarity=0.017  Sum_probs=41.6

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133-22115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ...+++.-.-|.|-++.+----. +.-+.++.++-++.+       .++- ...-..+.|+  |+...+.-.+-++...+
T Consensus        24 ~~~i~~l~~~Gv~gl~~~G~~gE~~~lt~~Er~~~~~~~-------~~~~-~~~~~ii~g~--~~~s~~~ai~~a~~a~~   93 (289)
T 2yxg_A           24 EENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKV-------VDVV-NGRVQVIAGA--GSNCTEEAIELSVFAED   93 (289)
T ss_dssp             HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHH-------HHHH-TTSSEEEEEC--CCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH-------HHHC-CCCEEEEECC--CCCHHHHHHHHHHHHHH
T ss_conf             999999997799989978544236658999999999999-------9860-7970699715--74019999999999997


Q ss_pred             HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             22346766413567-516789989998985077
Q gi|254780178|r  208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP  239 (378)
Q Consensus       208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP  239 (378)
                      .++++..+.-.... .+.+++.+-...+.+..+
T Consensus        94 ~G~d~v~i~pP~~~~~s~~~i~~~~~~ia~a~~  126 (289)
T 2yxg_A           94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESIN  126 (289)
T ss_dssp             HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             799999988987889899999999999998279


No 21 
>>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} (A:)
Probab=79.28  E-value=4.4  Score=20.23  Aligned_cols=120  Identities=13%  Similarity=0.084  Sum_probs=45.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133-22115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ++.++++..-|.|=++.+--.-. +.-+.++.++-++..       .+.  ......++|+  |+...+.-.+-++...+
T Consensus        32 ~~~i~~l~~~Gv~gi~~~GstGE~~~Lt~~Er~~l~~~~-------~~~--~~~~~ii~gv--~~~st~~~ie~a~~a~~  100 (313)
T 3dz1_A           32 DRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRF-------IKR--AKSXQVIVGV--SAPGFAAXRRLARLSXD  100 (313)
T ss_dssp             HHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHH-------HHH--CTTSEEEEEC--CCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHH-------HHH--CCCCCEEEEE--CCCHHHHHHHHHHHHHH
T ss_conf             999999997699989976575672338999999999986-------520--3565313310--22004667777653443


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCC-------CHHHHHHHHHH
Q ss_conf             22346766413567516789989998985077033100254-------10189999998
Q gi|254780178|r  208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMG-------VGTPDDILKSV  259 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G-------~G~P~~i~~~v  259 (378)
                      .+.++..+.-.-...+.+.+.+-...+.+....+.|.++..       .-+|..+...+
T Consensus       101 ~Gad~v~v~Ppy~~~~~~~i~~~~~~i~~a~~~~iPi~iYn~P~~~g~~l~~~~~~~l~  159 (313)
T 3dz1_A          101 AGAAGVXIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVXTPKVIRQIV  159 (313)
T ss_dssp             HTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf             12333334653112443368888998887405778646762342223447899999876


No 22 
>>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} (A:)
Probab=79.05  E-value=4.5  Score=20.19  Aligned_cols=22  Identities=18%  Similarity=0.122  Sum_probs=9.1

Q ss_pred             CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             2541018999999853898366
Q gi|254780178|r  246 LMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       246 l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      ....|.-..++....+|.|-+=
T Consensus       197 ~~~~g~d~~~~~~l~~G~~g~~  218 (306)
T 1o5k_A          197 MVWSGNDDRTFYLLCAGGDGVI  218 (306)
T ss_dssp             EEEESSGGGHHHHHHHTCCEEE
T ss_pred             EEECCCHHHHHHHHHCCCCCEE
T ss_conf             8954751888888754996144


No 23 
>>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236)
Probab=78.63  E-value=4.6  Score=20.10  Aligned_cols=19  Identities=21%  Similarity=-0.076  Sum_probs=11.3

Q ss_pred             HHHHHHHHHCCCCEEEEEH
Q ss_conf             9999998732897799601
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLD  147 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD  147 (378)
                      .+.+++....|.|-++.+.
T Consensus        24 ~~~~~~l~~~Gv~gi~~~G   42 (236)
T 2vc6_A           24 HDLVEWQIEEGSFGLVPCG   42 (236)
T ss_dssp             HHHHHHHHHTTCSEEETTS
T ss_pred             HHHHHHHHHCCCCEEEECE
T ss_conf             9999999977999999751


No 24 
>>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464)
Probab=78.08  E-value=4.8  Score=20.00  Aligned_cols=140  Identities=19%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHHHHH
Q ss_conf             999999873289779960121332211589999999889999999885135888605540234-4436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQG-GDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqG-G~~~dLR~~Sa~~l~~  207 (378)
                      +..+..-..-+.|++-.+|..-..    ...    +...+.++++    ... -+.-+...-+ ....|--...++.+.+
T Consensus       103 ~~~v~~s~~~~~~~~r~~~~~~~~----~~~----~~~i~~ak~~----G~~-~~~~i~~~~s~~~~~~~~~~~~~~l~~  169 (353)
T 2nx9_A          103 DTFVERAVKNGMDVFRVFDAMNDV----RNM----QQALQAVKKM----GAH-AQGTLCYTTSPVHNLQTWVDVAQQLAE  169 (353)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTCCT----HHH----HHHHHHHHHT----TCE-EEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHH----HHH----HHHHHHHHHC----CCC-EEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf             778889886130899875488789----999----9999999981----771-023332156888789999999998742


Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC
Q ss_conf             223467664135675167899899989850770331002---541018999999853898366200000233200245
Q gi|254780178|r  208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT  282 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t  282 (378)
                      ++.+.+.|.-......-++..+++..+....+..-=.|.   .|. -....+.|++.|+|.+|++.--.-.+.|.+=|
T Consensus       170 ~gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gl-a~an~l~Ai~aGad~IDtsi~glG~~tGn~~t  246 (353)
T 2nx9_A          170 LGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGL-ADMTLLKAIEAGVDRVDTAISSMSGTYGHPAT  246 (353)
T ss_dssp             TTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSC-HHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBH
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH
T ss_conf             698578842676656279999999999863576178984771778-99999999983998998378788998316879


No 25 
>>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:523-742,A:762-821)
Probab=76.38  E-value=5.3  Score=19.69  Aligned_cols=133  Identities=14%  Similarity=0.146  Sum_probs=71.9

Q ss_pred             ECHHHHHHH---HHHCCCCEEEEEHHHCCCCCCH------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH
Q ss_conf             129999999---8732897799601213322115------8999999988999999988513588860554023444366
Q gi|254780178|r  126 VSPEESVHI---QNLLGSDIQMQLDECLALPAED------KELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNIN  196 (378)
Q Consensus       126 ltpe~~i~~---q~~lg~DI~~~LD~~~~~~~~~------k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~d  196 (378)
                      -+|+++.+.   .+..|.|.+..=-.|+......      .+..+-+-...+|..+      .......+..   -...|
T Consensus       123 ~~~~~~~~aa~~~~~~g~d~Iein~~~~~~~~~~~~g~~~~~~~~~~~e~i~~v~~------~~~~pv~vk~---r~~~~  193 (280)
T 1gte_A          123 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ------AVQIPFFAKL---TPNVT  193 (280)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHH------HCSSCEEEEE---CSCSS
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEEE---CCCHH
T ss_conf             99999999999745358888999767899987433343110168999999999861------7899879997---99827


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--------CCC-HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             899998876422234676641356--------751-67899899989850770331002-54101899999985389836
Q gi|254780178|r  197 LRSFSAERLKELDLKGYAIGGLAV--------GEP-QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       197 LR~~Sa~~l~~~~~~G~aIgGl~~--------ge~-~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      .-.+-++.+.+.+++++.|.+-..        +.. .......+..+....+. .|... -|+.+|.++..++++|.|..
T Consensus       194 d~~e~a~~l~e~Gvd~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ggi~~~~~~~~~~~~GA~~v  272 (280)
T 1gte_A          194 DIVSIARAAKEGGADGVTATNTVSGLMYGGVSGTAIRPIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVL  272 (280)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCCEEECCCEEEESGGGHHHHHHHHHHHHHHSTT-CCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHCCCCHH
T ss_conf             89999999998599699995677765567002788899999999999987699-87999899899999999998699799


Q ss_pred             EE
Q ss_conf             62
Q gi|254780178|r  267 DC  268 (378)
Q Consensus       267 D~  268 (378)
                      =.
T Consensus       273 ~~  274 (280)
T 1gte_A          273 QV  274 (280)
T ss_dssp             EE
T ss_pred             HH
T ss_conf             87


No 26 
>>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} (A:)
Probab=75.93  E-value=5.5  Score=19.61  Aligned_cols=18  Identities=11%  Similarity=0.093  Sum_probs=7.6

Q ss_pred             HHHHHHHHHCCCCEEEEE
Q ss_conf             999999873289779960
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L  146 (378)
                      +..++++..-|.|-+..+
T Consensus        31 ~~~i~~l~~~Gv~gi~~~   48 (297)
T 3flu_A           31 RDLIDWHIENGTDGIVAV   48 (297)
T ss_dssp             HHHHHHHHHTTCCEEEES
T ss_pred             HHHHHHHHHCCCCEEEEC
T ss_conf             999999997699989968


No 27 
>>3g1v_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, D70G; HET: 5FU; 1.30A {Methanothermobacter thermautotrophicusstr} PDB: 3g1s_A* 3g1x_A* 1kly_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3g1a_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 1loq_A* 1lor_A* 1km0_A* 1dv7_A 2zz3_A* 1km1_A* 1km6_A* 1km5_A* ... (A:)
Probab=75.92  E-value=4.9  Score=19.93  Aligned_cols=122  Identities=12%  Similarity=-0.008  Sum_probs=65.8

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH---HHHHH
Q ss_conf             129999999873289779960121332211589999999889999999885135888605540234443668---99998
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINL---RSFSA  202 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dL---R~~Sa  202 (378)
                      -+++.+++.-..+|+|.+..-+...             +.+.+++.++.+....    ..+.+... ..++.   .....
T Consensus        78 ~~~~~~~~~~~~~gad~v~v~~~~~-------------~~~~~~~~~~~~~~~~----~~~~l~~~-t~~~~~~~~~~~~  139 (228)
T 3g1v_A           78 ETNEKICRATFKAGADAIIVHGFPG-------------ADSVRACLNVAEEMGR----EVFLLTEM-SHPGAEMFIQGAA  139 (228)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESTTC-------------HHHHHHHHHHHHHHTC----EEEEECSC-SSGGGGTTHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCC-------------HHHHHHHHHHHHHHCC----CEEEEECC-CCCCHHHHHHHHH
T ss_conf             7999999999854998999861389-------------7899999999885188----40341011-4651777777799


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             8764222346766413567516789989998985077033100254101899999985389836620
Q gi|254780178|r  203 ERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       203 ~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      +.+...-..+ ...|...   .....+-+......++...|....|.+.+.++..+++.|+|.+-.-
T Consensus       140 ~~~~~~~~~~-~~~G~~~---~~~~~~~~~~~~~~~~~~~~i~~~Gg~~~~~~~~~~~~Gad~vvvG  202 (228)
T 3g1v_A          140 DEIARMGVDL-GVKNYVG---PSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVG  202 (228)
T ss_dssp             HHHHHHHHHT-TCCEEEC---CTTCHHHHHHHHHHHCTTSEEEECCBSTTSBCHHHHTTTCSEEEEC
T ss_pred             HHHHHHHHHH-CCCCEEC---CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEC
T ss_conf             9999999983-8873023---5579999999998538871899668876889977887539999989


No 28 
>>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:)
Probab=74.78  E-value=5.9  Score=19.42  Aligned_cols=22  Identities=23%  Similarity=0.155  Sum_probs=10.2

Q ss_pred             CCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             4101899999985389836620
Q gi|254780178|r  248 GVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       248 G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      -.|....++....+|.|-+-|.
T Consensus       184 ~~g~d~~~~~~~~~G~~G~~~~  205 (291)
T 3bi8_A          184 YSGNDDQIIPILALGGIGVISV  205 (291)
T ss_dssp             EESCGGGHHHHHHTTCCEEEES
T ss_pred             ECCCHHHHHHHHHCCCCEEECC
T ss_conf             0783788899986799800104


No 29 
>>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} (A:1-280)
Probab=74.17  E-value=6.1  Score=19.32  Aligned_cols=102  Identities=14%  Similarity=0.014  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             999999987328977996012133-2211589999999889999999885135888605540234443668999988764
Q gi|254780178|r  128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK  206 (378)
Q Consensus       128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~  206 (378)
                      -++.++++..-|.|-++.+--.-. ..-+.++.++-++...   +.+     ...-..+.|+  |+...+.-.+-+++..
T Consensus        57 ~~~~i~~li~~Gv~Gi~i~Gs~GE~~~Ls~eEr~~l~~~~~---~~~-----~~r~~vi~g~--~~~st~~~i~~a~~A~  126 (280)
T 2r8w_A           57 FSALIARLDAAEVDSVGILGSTGIYXYLTREERRRAIEAAA---TIL-----RGRRTLXAGI--GALRTDEAVALAKDAE  126 (280)
T ss_dssp             HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHH---HHH-----TTSSEEEEEE--CCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---HHH-----CCCCCCCCCC--CHHHHHHHHHHHHHHC
T ss_conf             99999999977999999782065542489999999999999---973-----1454201233--1025778889987620


Q ss_pred             HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             222346766413567-516789989998985077
Q gi|254780178|r  207 ELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP  239 (378)
Q Consensus       207 ~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP  239 (378)
                      +.+.++..+--.... -+.+.+.+-...+.+..|
T Consensus       127 ~~G~d~vlv~pP~~~~~~~~~i~~~~~~ia~a~~  160 (280)
T 2r8w_A          127 AAGADALLLAPVSYTPLTQEEAYHHFAAVAGATA  160 (280)
T ss_dssp             HHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             3454322212233456552366766545554125


No 30 
>>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221)
Probab=73.75  E-value=6.2  Score=19.25  Aligned_cols=28  Identities=21%  Similarity=0.242  Sum_probs=11.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             3444366899998876422234676641
Q gi|254780178|r  190 QGGDNINLRSFSAERLKELDLKGYAIGG  217 (378)
Q Consensus       190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgG  217 (378)
                      +|-++.|.-++-++.+.+.+++|+.+.|
T Consensus        31 d~~iD~~~~~~~i~~l~~~Gv~gi~v~G   58 (221)
T 3cpr_A           31 SGDIDIAAGREVAAYLVDKGLDSLVLAG   58 (221)
T ss_dssp             TSCBCHHHHHHHHHHHHHTTCCEEEESS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECE
T ss_conf             9593999999999999977999899784


No 31 
>>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229)
Probab=70.22  E-value=7.4  Score=18.73  Aligned_cols=19  Identities=16%  Similarity=0.211  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHCCCCEEEE
Q ss_conf             0189999998538983662
Q gi|254780178|r  250 GTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       250 G~P~~i~~~v~~GvDlFD~  268 (378)
                      |.-..++....+|.|-+-|
T Consensus       188 G~d~~~~~~~~~G~~G~i~  206 (229)
T 3daq_A          188 GNDDNVVEYYQRGGQGVIS  206 (229)
T ss_dssp             SCGGGHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHCCCCEEEC
T ss_conf             8657678998359961243


No 32 
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:495-825,A:946-1003)
Probab=69.76  E-value=7.6  Score=18.66  Aligned_cols=144  Identities=10%  Similarity=0.007  Sum_probs=81.5

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCEEEEEC-CCCCCHHHHHHHHHHH
Q ss_conf             999999873289779960121332211589999999889999999885135-88-86055402-3444366899998876
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGN-QP-GKALFGIV-QGGDNINLRSFSAERL  205 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~-~~-~~~lfgiV-qGG~~~dLR~~Sa~~l  205 (378)
                      +..++.-...|-|++-.+|.+.....-.        ...+.++++...... .. -...|+.- .+...++.-.+-++.+
T Consensus       136 ~~~~~~a~~~g~d~~rif~~~n~~~~~~--------~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~l  207 (389)
T 3hbl_A          136 HKFVQESAKAGIDVFRIFDSLNWVDQMK--------VANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKEL  207 (389)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTCCGGGGH--------HHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCHHHHH--------HHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             9999999972898798614131088889--------99999997205445679974056887657766899999999987


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCC
Q ss_conf             42223467664135675167899899989850770331002---54101899999985389836620000023320024
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF  281 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~  281 (378)
                      .+.+.+.+.|---+....-+...+++..+....+..-=.|.   +|. -....+.|++.|+|.+|++..-.-.+-|.+=
T Consensus       208 ~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gl-a~An~laAi~aGvd~VD~si~gmg~~tGn~~  285 (389)
T 3hbl_A          208 EREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGN-GLLTYKQAIDAGVDIIDTAVASMSGLTSQPS  285 (389)
T ss_dssp             HHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCCSCEEEEECBTTSC-HHHHHHHHHHTTCSEEEEBCGGGCSBTSCCB
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             63488679973875565768999999999860798558734888642-7999999997499889841133557768976


No 33 
>>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419)
Probab=69.59  E-value=7.7  Score=18.64  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=12.1

Q ss_pred             HHHHHHCCCCEEEECCEEECC
Q ss_conf             999985389836620000023
Q gi|254780178|r  255 ILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       255 i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      +-.++..|++..=|++-.-.+
T Consensus       255 F~~~~~ag~~~vM~s~~~~~~  275 (419)
T 3bmx_A          255 FQKAIDAGADMVMTAHVQFPA  275 (419)
T ss_dssp             HHHHHHTTCCEEEECCCBCTT
T ss_pred             HHHHHHCCCCEEEEEECCCCC
T ss_conf             999997399838985101355


No 34 
>>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A (A:)
Probab=68.68  E-value=8  Score=18.51  Aligned_cols=124  Identities=10%  Similarity=-0.037  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             999999987328977996012133-2211589999999889999999885135888605540234443668999988764
Q gi|254780178|r  128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK  206 (378)
Q Consensus       128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~  206 (378)
                      -...++++..-|.|-++..--.-. ..-+.++.++-++.+.       +.- ..+-..++|+  |+...+.-.+-++...
T Consensus        31 ~~~~~~~l~~~G~~gi~~~GstGE~~~Lt~eEr~~li~~~~-------~~~-~~~~~vi~gv--~~~~t~~~i~~a~~a~  100 (309)
T 3fkr_A           31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTIL-------EHV-AGRVPVIVTT--SHYSTQVCAARSLRAQ  100 (309)
T ss_dssp             HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHH-------HHH-TTSSCEEEEC--CCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH-------HHC-CCCCEEEEEC--CCCCHHHHHHHHHHHH
T ss_conf             99999999975999899783534546479999999999999-------970-6986189836--8786899999999962


Q ss_pred             HHHHHHHHHHCCC---CCC-CHHHHHHHHHHHHHCCCHHHHEE----CCCC-HHHHHHHHHHHC
Q ss_conf             2223467664135---675-16789989998985077033100----2541-018999999853
Q gi|254780178|r  207 ELDLKGYAIGGLA---VGE-PQEVMLHILSNVLPILPVERPHY----LMGV-GTPDDILKSVSY  261 (378)
Q Consensus       207 ~~~~~G~aIgGl~---~ge-~~~~~~~ii~~~~~~LP~~kPr~----l~G~-G~P~~i~~~v~~  261 (378)
                      +.+.+|..+.-..   ..+ +.+.+.+-...+.+..+..--.|    ..|. -+|..+...++.
T Consensus       101 ~~Gad~v~i~pP~~~~~~~~s~~~i~~y~~~i~~a~~~pi~iYn~P~~~g~~~~~~~l~~l~~~  164 (309)
T 3fkr_A          101 QLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREI  164 (309)
T ss_dssp             HTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHS
T ss_pred             HCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf             1499789963874456789899999999999973038976885277655677889999998548


No 35 
>>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217)
Probab=67.82  E-value=8.3  Score=18.40  Aligned_cols=15  Identities=13%  Similarity=-0.188  Sum_probs=6.4

Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             999998538983662
Q gi|254780178|r  254 DILKSVSYGVDMFDC  268 (378)
Q Consensus       254 ~i~~~v~~GvDlFD~  268 (378)
                      .+.....+|.|-+-|
T Consensus       199 ~l~~~l~~Ga~G~~s  213 (217)
T 3e96_A          199 WAPFFWHAGAKGFTS  213 (217)
T ss_dssp             THHHHHHHTCCEEEE
T ss_pred             CHHHHCCCCCCEEEE
T ss_conf             102321346874576


No 36 
>>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* (A:1-311)
Probab=67.71  E-value=8.4  Score=18.39  Aligned_cols=146  Identities=6%  Similarity=0.025  Sum_probs=86.0

Q ss_pred             CHHHHHHHHHHCCCCEEEEEHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCCHHHHH
Q ss_conf             29999999873289779960121332211------5899999998899999998851358886055-4023444366899
Q gi|254780178|r  127 SPEESVHIQNLLGSDIQMQLDECLALPAE------DKELKRAMELSLRWAERSLVAFGNQPGKALF-GIVQGGDNINLRS  199 (378)
Q Consensus       127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~------~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giVqGG~~~dLR~  199 (378)
                      .....++.....+.+....+.........      .....+.+..+.++++       +.....-+ -..-.....+.-.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ak-------~~G~~v~~~~~~~~~~~~~~~~  183 (311)
T 3ivs_A          111 CHXDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVK-------SKGIEVRFSSEDSFRSDLVDLL  183 (311)
T ss_dssp             SCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHH-------TTTCEEEEEEESGGGSCHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCC-------CCCCCCCCCCCHHCCCCCCHHH
T ss_conf             580669999970577423886231555332011111002330011210011-------2321323333200134321013


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             99887642223467664135675167899899989850770331002---541018999999853898366200000233
Q gi|254780178|r  200 FSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       200 ~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      +.++.+.+.+.+.+.|.--.....-+.+.+++..........-=.|.   +|.+ -...+.|++.|+|.+|++..-.-.|
T Consensus       184 ~~~~~~~~~g~d~i~l~Dt~G~~~P~~~~~li~~~~~~~~~~l~~H~Hnd~Gla-~An~laAl~aG~~~id~sv~G~G~r  262 (311)
T 3ivs_A          184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCDIECHFHNDTGXA-IANAYCALEAGATHIDTSILGIGER  262 (311)
T ss_dssp             HHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCSSEEEEEEBCTTSCH-HHHHHHHHHTTCCEEEEBGGGCSST
T ss_pred             HHHHHHCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCHHHH-HHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf             323343013422121023211358620125886302331000330125535444-4789999871653101123455765


Q ss_pred             CCCC
Q ss_conf             2002
Q gi|254780178|r  277 HGLA  280 (378)
Q Consensus       277 ~G~~  280 (378)
                      .|.+
T Consensus       263 ~Gn~  266 (311)
T 3ivs_A          263 NGIT  266 (311)
T ss_dssp             TCBC
T ss_pred             CCCC
T ss_conf             4665


No 37 
>>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, schiff base, cytoplasm, diaminopimelate biosynthesis; HET: MES; 1.99A {Streptococcus pneumoniae} (A:1-214)
Probab=65.71  E-value=9.1  Score=18.13  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=12.3

Q ss_pred             EECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             0025410189999998538983662
Q gi|254780178|r  244 HYLMGVGTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       244 r~l~G~G~P~~i~~~v~~GvDlFD~  268 (378)
                      +...-.|.-..++....+|.|-+-|
T Consensus       186 ~~~i~~G~d~~~~~~l~~G~~G~~s  210 (214)
T 3h5d_A          186 EFLIYTGEDGDAFHAMNLGADGVIS  210 (214)
T ss_dssp             SCEEEECCGGGHHHHHHHTCCEEEE
T ss_pred             CCEEECCCHHHHHHHHHCCEEEEEE
T ss_conf             8067217536565787558058863


No 38 
>>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreductase; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* (A:)
Probab=63.78  E-value=8  Score=18.53  Aligned_cols=77  Identities=14%  Similarity=0.109  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             999887642223467664135--6751678998999898507703310025-4101899999985389836620000023
Q gi|254780178|r  199 SFSAERLKELDLKGYAIGGLA--VGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       199 ~~Sa~~l~~~~~~G~aIgGl~--~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      ...+..+.+.+++++.++|-.  .....+...+.+.......-...|...- |+-++.||+.|++||.|..=..-|...+
T Consensus       240 ~~~a~~~~~~G~d~I~v~g~gG~~~~~~~~~~~~~~~~~~~~~~~i~IiadGGIr~g~Di~KALaLGAd~V~iGr~~l~~  319 (368)
T 2nli_A          240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFG  319 (368)
T ss_dssp             HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             77776888638761010000013345774211225467751277531575067576789999998289967657899999


No 39 
>>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A (A:1-278)
Probab=61.29  E-value=11  Score=17.60  Aligned_cols=101  Identities=12%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133-22115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ++.++++..-|.+-++.+--.-. +.-+.++.++-++.+.+-+        ...-..++|+  |+...+.-.+-+++..+
T Consensus        55 ~~~i~~~~~~Gv~gl~i~GstGE~~~Lt~~Er~~l~~~~~~~~--------~~~~~vi~g~--~~~st~~ai~~a~~a~~  124 (278)
T 2v9d_A           55 AALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHV--------DRRVPVLIGT--GGTNARETIELSQHAQQ  124 (278)
T ss_dssp             HHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHH--------TTSSCEEEEC--CSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHC--------CCCCCEEECC--CCCCCHHHHHHHHHHHH
T ss_conf             9999999986999999784466367684999999999999872--------6655244224--55662068999999986


Q ss_pred             HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC
Q ss_conf             22346766413567-516789989998985077
Q gi|254780178|r  208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP  239 (378)
Q Consensus       208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP  239 (378)
                      .+.++..+.-.... -+.+.+.+-...+.+..+
T Consensus       125 ~G~d~vli~pP~~~~~~~~~i~~~~~~i~~a~~  157 (278)
T 2v9d_A          125 AGADGIVVINPYYWKVSEANLIRYFEQVADSVT  157 (278)
T ss_dssp             HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             267704652022344220058899999998459


No 40 
>>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} (A:1-365)
Probab=60.24  E-value=11  Score=17.48  Aligned_cols=23  Identities=13%  Similarity=0.133  Sum_probs=15.1

Q ss_pred             HHHHHHCCCCEEEECCEEECCCC
Q ss_conf             99998538983662000002332
Q gi|254780178|r  255 ILKSVSYGVDMFDCVMPTRAGRH  277 (378)
Q Consensus       255 i~~~v~~GvDlFD~~~ptr~Ar~  277 (378)
                      +-.+++.|+...=|+|..-....
T Consensus       238 F~~~~~~g~~~vM~~y~~i~~~p  260 (365)
T 1x38_A          238 YKNAMDKGVSTVMISYSSWNGVK  260 (365)
T ss_dssp             HHHHHHTTCCEEEECSSEETTEE
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             89998845662334332334444


No 41 
>>1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} (A:1-218)
Probab=60.17  E-value=1.8  Score=22.82  Aligned_cols=61  Identities=8%  Similarity=-0.036  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             8876422234676641356-----75167899899989850770331002-54101899999985389836
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAV-----GEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~-----ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      ++.+.+.++++..++|...     +..... .   .......+.+.|... -|+.+|.++..+.++|+|-.
T Consensus       146 a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~-~---~~i~~~~~~~ipvia~GGI~~~~dv~~~l~~GAd~V  212 (218)
T 1yxy_A          146 GLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-V---ALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGI  212 (218)
T ss_dssp             HHHHHHTTCSEEECTTTTSSTTSCCSSSCC-H---HHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEE
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCHHH-H---HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             999885299999981645877666741688-9---999887437982998589999999999998799999


No 42 
>>1tb3_A Hydroxyacid oxidase 3; flavoprotein, oxidoreductase; HET: FMN; 2.30A {Rattus norvegicus} (A:)
Probab=59.56  E-value=6.5  Score=19.11  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             9887642223467664135675--1678998999898507703310025-4101899999985389836620000023
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      -++.+.+.++++..++|..-+-  ......+++..+...+..+-|...- |+.++.+|+.+.++|.|..=..-|...+
T Consensus       230 ~a~~~~~~g~d~i~v~g~~g~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~g~dv~kALalGAd~V~iG~~fl~~  307 (352)
T 1tb3_A          230 DAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG  307 (352)
T ss_dssp             HHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred             HHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf             699998862131012132100001464210014778750489756896167685778999998589989887799999


No 43 
>>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* (A:)
Probab=59.43  E-value=12  Score=17.39  Aligned_cols=147  Identities=12%  Similarity=0.070  Sum_probs=84.7

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-----CCCC
Q ss_conf             129999999873289779960121332------21158999999988999999988513588860554023-----4443
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLAL------PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ-----GGDN  194 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~------~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq-----GG~~  194 (378)
                      ...+.+++.....+.|.+..+--..+.      ..+.+...+.+....+++++       . +-..++.+.     ....
T Consensus        96 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-------~-G~~v~~~~~~~~~~~~~~  167 (337)
T 3ble_A           96 VDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIK-------S-GLKINVYLEDWSNGFRNS  167 (337)
T ss_dssp             SSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHH-------T-TCEEEEEEETHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------C-CCEEEEEECCCCCCCCCC
T ss_conf             54338899998659984520345322331121012088898888899999975-------4-975998631344443345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             668999988764222346766413567516789989998985077033-1002---541018999999853898366200
Q gi|254780178|r  195 INLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       195 ~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .+.-.+.++.+.+.+.+.+.|-.-.-...-++..+++..+...+|.-. =.|.   +|. .....+.|+..|+|.+|++.
T Consensus       168 ~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~Gl-A~An~laAl~aGa~~vd~s~  246 (337)
T 3ble_A          168 PDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDL-SVANSLQAIRAGVKGLHASI  246 (337)
T ss_dssp             HHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSC-HHHHHHHHHHTTCSEEEEBG
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH-HHHHHHHHHHCCCCEEECCC
T ss_conf             30245666778763123320363442231356679999999648995479860512567-77899999975972662244


Q ss_pred             EEECCCCCCCC
Q ss_conf             00023320024
Q gi|254780178|r  271 PTRAGRHGLAF  281 (378)
Q Consensus       271 ptr~Ar~G~~~  281 (378)
                      --.-.|.|.+=
T Consensus       247 ~G~G~r~Gn~~  257 (337)
T 3ble_A          247 NGLGERAGNTP  257 (337)
T ss_dssp             GGCSSTTCBCB
T ss_pred             CCCCCCCCCCH
T ss_conf             55456767760


No 44 
>>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=58.36  E-value=9.8  Score=17.91  Aligned_cols=125  Identities=8%  Similarity=-0.091  Sum_probs=63.1

Q ss_pred             EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HH
Q ss_conf             71299999998732897799601213322115899999998899999998851358886055402344436689999-88
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFS-AE  203 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~S-a~  203 (378)
                      ..+.+.+.+.-...|.|.+..-+-..+.+.         +.+.++...+.+.       -+-.++-.+...++++.. ..
T Consensus        68 ~~~~~~~~~~l~~~G~~~v~l~~~~~~~~~---------~~~~~~~~~a~~~-------gl~~iv~v~~~~~~~~~~~~~  131 (219)
T 2h6r_A           68 SHTGHILAEAIKDCGCKGTLINHSEKRMLL---------ADIEAVINKCKNL-------GLETIVCTNNINTSKAVAALS  131 (219)
T ss_dssp             SCTTCCCHHHHHHHTCCEEEESBTTBCCBH---------HHHHHHHHHHHHH-------TCEEEEEESSSHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHHHHHHEEECCHHHHHHH---------CCHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHC
T ss_conf             730110089998865203111350122100---------2047999999987-------990588506234331444304


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHCCCHHHHEE-CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             76422234676641356751678---9989998985077033100-2541018999999853898366
Q gi|254780178|r  204 RLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPILPVERPHY-LMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       204 ~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~LP~~kPr~-l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .....-....++++- .+.....   ....+..... ...+.|.. =.|+.+|.+.-.+..+|+|-+=
T Consensus       132 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~-~~~~~~ii~ggGI~~~~~~~~~~~~gadgvl  197 (219)
T 2h6r_A          132 PDCIAVEPPELIGTG-IPVSKANPEVVEGTVRAVKE-INKDVKVLCGAGISKGEDVKAALDLGAEGVL  197 (219)
T ss_dssp             CSEEEECCCC---------------CSHHHHHHHHH-HCTTCEEEECSSCCSHHHHHHHHTTTCCCEE
T ss_pred             CCEEEECCHHHHCCC-CCCCHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCHHHHHHHCCCCCEEE
T ss_conf             625776572242068-78886678999999998775-2246023541444574489997346997799


No 45 
>>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A (A:)
Probab=58.25  E-value=12  Score=17.26  Aligned_cols=15  Identities=7%  Similarity=-0.006  Sum_probs=6.1

Q ss_pred             HHHHHHHCCCCEEEE
Q ss_conf             999998538983662
Q gi|254780178|r  254 DILKSVSYGVDMFDC  268 (378)
Q Consensus       254 ~i~~~v~~GvDlFD~  268 (378)
                      .++....+|.|-+-|
T Consensus       180 ~~~~~~~~G~~G~i~  194 (288)
T 2nuw_A          180 TLIYYSLLSLDGVVA  194 (288)
T ss_dssp             GGHHHHHTTSSEEEC
T ss_pred             CCCCHHHHCCCCCCC
T ss_conf             433102101565533


No 46 
>>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} (A:)
Probab=57.92  E-value=12  Score=17.22  Aligned_cols=124  Identities=15%  Similarity=0.027  Sum_probs=62.9

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      .+..+....-+.|++.....|.....-.....       .|....... .......+.+   +....+.    ++.+.+.
T Consensus        80 ~~~~~~~~e~~~~~i~i~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~---~v~~~~~----a~~a~~~  144 (268)
T 2htm_A           80 VRLARLGRLLTGERWVKLEVIPDPTYLLPDPL-------ETLKAAERL-IEEDFLVLPY---MGPDLVL----AKRLAAL  144 (268)
T ss_dssp             HHHHHHHHHHHCCSEEBCCCCSCTTTTCCCHH-------HHHHHHHHH-HHTTCEECCE---ECSCHHH----HHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH-------HHHHHHHHH-HCCCCEEEEE---CCCCHHH----HHHHHHC
T ss_conf             99999999954997588773388345796576-------789999998-5099689862---7877899----9999864


Q ss_pred             HHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf             23467664135675-1678998999898507703310025-41018999999853898366
Q gi|254780178|r  209 DLKGYAIGGLAVGE-PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       209 ~~~G~aIgGl~~ge-~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD  267 (378)
                      +.++..+.|-.-+. ........+..+......+.|...- |+.++.++..++++|.|-.=
T Consensus       145 Gad~i~v~g~~~~~~~g~~~~~~l~~~~~a~~~~ipVia~GGI~~~~dv~~al~lGAdaV~  205 (268)
T 2htm_A          145 GTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVL  205 (268)
T ss_dssp             TCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             9837851044553054447988999999750688876864478987889999973888998


No 47 
>>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020)
Probab=55.94  E-value=13  Score=17.01  Aligned_cols=90  Identities=14%  Similarity=0.112  Sum_probs=59.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             44436689999887642223467664135675167899899989850770331002---541018999999853898366
Q gi|254780178|r  191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      +...++.-..-++.+.+.+.+.+.|.--.....-+...+++..+....+..-=.|.   +|.+ ....+.|++.|+|.+|
T Consensus       192 ~~~~~~~~~~~a~~l~~~G~~~i~i~Dt~G~~~P~~~~~Lv~~lk~~~~i~i~~H~Hnd~Gla-~An~laAi~aGad~VD  270 (388)
T 2qf7_A          192 PKYDLKYYTNLAVELEKAGAHIIAVXDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIA-AATVLAAVEAGVDAVD  270 (388)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCH-HHHHHHHHHTTCSEEE
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHHHHCCCCEEE
T ss_conf             867889999999999975998898617766656166999999998454972899625653026-6899999976986665


Q ss_pred             ECCEEECCCCCCCC
Q ss_conf             20000023320024
Q gi|254780178|r  268 CVMPTRAGRHGLAF  281 (378)
Q Consensus       268 ~~~ptr~Ar~G~~~  281 (378)
                      ++.--.-.|.|.+=
T Consensus       271 ~si~GmG~~tGn~~  284 (388)
T 2qf7_A          271 AAMDALSGNTSQPC  284 (388)
T ss_dssp             EBCGGGCSBTSCCB
T ss_pred             ECCCCCCCCCCCCC
T ss_conf             13444457888875


No 48 
>>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:1-218)
Probab=55.66  E-value=14  Score=16.98  Aligned_cols=79  Identities=13%  Similarity=-0.011  Sum_probs=37.6

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             999999873289779960121332-2115899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLAL-PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~-~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ++.++++..-|.|-+..+---... .-+.++.++-++++.   +.+     ...-..++|+  |+...+.-.+-+++..+
T Consensus        35 ~~~i~~~~~~G~~gi~~~G~tGE~~~Lt~~Er~~l~~~~~---~~~-----~~~~~vi~gv--~~~~t~~~i~~a~~a~~  104 (218)
T 2wkj_A           35 RRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA---EEA-----KGKIKLIAHV--GCVSTAESQQLAASAKR  104 (218)
T ss_dssp             HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHH---HHH-----TTTSEEEEEC--CCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---HHH-----HCCCCEEECC--CCCHHHHHHHHHHHHHH
T ss_conf             9999999986999899775775421389999999999999---986-----3233111102--21102345677899997


Q ss_pred             HHHHHHHHHC
Q ss_conf             2234676641
Q gi|254780178|r  208 LDLKGYAIGG  217 (378)
Q Consensus       208 ~~~~G~aIgG  217 (378)
                      .++++..+.-
T Consensus       105 ~Gad~vlv~p  114 (218)
T 2wkj_A          105 YGFDAVSAVT  114 (218)
T ss_dssp             HTCSEEEEEC
T ss_pred             CCCCCCEECC
T ss_conf             5996120148


No 49 
>>1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} (A:)
Probab=53.91  E-value=14  Score=16.79  Aligned_cols=135  Identities=12%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             HHHHHCCCCEEEEEHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             998732897799601213322115-8999999988999999988513588860554023444366899998876422234
Q gi|254780178|r  133 HIQNLLGSDIQMQLDECLALPAED-KELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLK  211 (378)
Q Consensus       133 ~~q~~lg~DI~~~LD~~~~~~~~~-k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~  211 (378)
                      ......+.|.......|++..... ........+.-....+..+.....-...++--+-.+...+....-++.+.+.+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pv~vK~~~~~~~~~~~~~~~~~~~~G~~  249 (367)
T 1d3g_A          170 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGID  249 (367)
T ss_dssp             HHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             77764126403455322321112110122101357888887754301245776301357764302344467788766432


Q ss_pred             HHHHHCCCCC-----CC--------------HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             6766413567-----51--------------67899899989850770331002-541018999999853898366
Q gi|254780178|r  212 GYAIGGLAVG-----EP--------------QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       212 G~aIgGl~~g-----e~--------------~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      |..+.|-...     ++              .....+.+..+...+..+-|... =|+-++.|++.++++|+|..=
T Consensus       250 ~i~v~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~~~l~~i~~~~~~~~~Ii~~GGI~~~~Dv~k~l~~GAd~V~  325 (367)
T 1d3g_A          250 GLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQ  325 (367)
T ss_dssp             EEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             HEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHH
T ss_conf             1011333333346544421124553323013356588999999983899648998697999999999984997875


No 50 
>>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} (A:)
Probab=53.80  E-value=14  Score=16.78  Aligned_cols=172  Identities=12%  Similarity=0.166  Sum_probs=72.6

Q ss_pred             EECCCCCCCCCCCHHHHHHCCCCEEEEEHH--HHHHCCCHHHHHHCCCCHHHCCCC-CCEEECCCCCCCCHHHHCCCCCC
Q ss_conf             410686856886889998609989993226--657387689986527420110157-72241145432101221022333
Q gi|254780178|r   34 MPVGTAGTVKAMYFDQVRDLGADVILGNAY--HLMLRPGAERIARLGGLHKFIRWF-KPILTDSGGFQVMSLSKLCSIDE  110 (378)
Q Consensus        34 lpv~t~g~v~~lt~~~l~~~g~~~il~Nty--hl~~~pg~~~i~~~gGlh~fl~~~-~~ilTDSGgfQv~sl~~~~~~~~  110 (378)
                      -+....+---.+++.+|+++|++-++-+=-  -.+.....+.|.+-  +..-+... .||         +..|....-.+
T Consensus        68 ~~~~~Ga~TGeiS~~~Lkd~G~~~vliGHSERR~~f~Et~~~i~~K--v~~a~~~gl~pI---------vCvGE~~~~r~  136 (257)
T 2dp3_A           68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKK--AKRALEKGMTVI---------FCVGETLDERK  136 (257)
T ss_dssp             CSSCSSSCTTCCCHHHHHHTTCCEEEECCHHHHHTSCCCHHHHHHH--HHHHHHTTCEEE---------EEECCCHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH--HHHHHHCCCEEE---------EEECCCCCCCC
T ss_conf             0003433101111777763165246642454433442008899999--999997599689---------99614444211


Q ss_pred             CCEEEECCCCCCEEEECHHHHHHHHHHCCCC------EEEEE----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             3102101445415871299999998732897------79960----1213322115899999998899999998851358
Q gi|254780178|r  111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSD------IQMQL----DECLALPAEDKELKRAMELSLRWAERSLVAFGNQ  180 (378)
Q Consensus       111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~D------I~~~L----D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~  180 (378)
                      .|.+         ..+--++.-.....++.|      ++++-    ..-++..++.+.+++...--.+++.++.......
T Consensus       137 ~~~~---------~~~~~~Ql~~~l~~~~~~~~~~~~~iIAYEPvwAIGtg~~as~e~i~~v~~~Ir~~l~~~~~~~~~~  207 (257)
T 2dp3_A          137 ANRT---------MEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQ  207 (257)
T ss_dssp             TTCH---------HHHHHHHHHHHHHHHTTCGGGGGGEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCHH---------HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             1015---------7899988874440023210255647999655001355544561333335789999999887775538


Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             886055402344436689999887642223467664135675167899899989
Q gi|254780178|r  181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNV  234 (378)
Q Consensus       181 ~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~  234 (378)
                      .-..|+|   |+...+--   .+.+...++||+.|||.++..+   +.+++..+
T Consensus       208 ~v~ILYG---GSV~~~n~---~~l~~~~~vDG~LvG~asl~~e---f~~ii~~~  252 (257)
T 2dp3_A          208 HIRIIYG---GSANGSNC---EKLGQCPNIDGFLVGGASLKPE---FMTMIDIL  252 (257)
T ss_dssp             HSEEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGGSTH---HHHHHHHH
T ss_pred             CCCEEEC---CCCCHHHH---HHHHCCCCCCEEEEEHHHCCHH---HHHHHHHH
T ss_conf             6548960---88898999---9985788999799510546966---89999999


No 51 
>>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} (A:)
Probab=53.61  E-value=10  Score=17.72  Aligned_cols=73  Identities=12%  Similarity=-0.033  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCCC--CHH-------HHHHHHHHHHHCCC-------HHHHEEC-CCCHHHHHHHHHHHCCCC
Q ss_conf             887642223467664135675--167-------89989998985077-------0331002-541018999999853898
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVGE--PQE-------VMLHILSNVLPILP-------VERPHYL-MGVGTPDDILKSVSYGVD  264 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~ge--~~~-------~~~~ii~~~~~~LP-------~~kPr~l-~G~G~P~~i~~~v~~GvD  264 (378)
                      +..+.+.++++..+++ +.|-  +..       -....+..+...||       .+-|... =|+-++.||+.|+++|.|
T Consensus       298 a~~a~~~g~d~I~v~~-~gg~~~~~~~~~~~g~p~~~~~~~~~~~l~~~~~~~~~~v~ii~dGGir~g~Dv~KAlalGAd  376 (503)
T 1me8_A          298 FRYLADAGADFIKIGI-GGGSIXITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGAD  376 (503)
T ss_dssp             HHHHHHHTCSEEEECS-SCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCS
T ss_pred             HHHHHHHCCCEEEEEC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHCCC
T ss_conf             9999983888689841-578645440104358845889999999997751112688853425674643079999870898


Q ss_pred             EEEECCEEECC
Q ss_conf             36620000023
Q gi|254780178|r  265 MFDCVMPTRAG  275 (378)
Q Consensus       265 lFD~~~ptr~A  275 (378)
                      ..=.--|...|
T Consensus       377 ~v~~Gr~~~~~  387 (503)
T 1me8_A          377 FIMLGRYFARF  387 (503)
T ss_dssp             EEEESHHHHTB
T ss_pred             EEEECCHHCCC
T ss_conf             89765011553


No 52 
>>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} (A:)
Probab=52.93  E-value=15  Score=16.69  Aligned_cols=126  Identities=11%  Similarity=-0.091  Sum_probs=78.9

Q ss_pred             CHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC----CCHHHHHHHH
Q ss_conf             299999998732897799601213322115899999998899999998851358886055402344----4366899998
Q gi|254780178|r  127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG----DNINLRSFSA  202 (378)
Q Consensus       127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG----~~~dLR~~Sa  202 (378)
                      .-+++++....+|-+-+|.=.--.|.+.         +.|.+..+.+...--..  ..-+|.+.|+    .......+.+
T Consensus        86 ~~~~~i~~a~~~Gf~sVmiD~S~l~~~e---------nit~~~v~~a~~~g~~v--E~ElG~~~g~e~~~~~~t~~~~a~  154 (251)
T 1qwg_A           86 KFDEFLNECEKLGFEAVEISDGSSDISL---------EERNNAIKRAKDNGFMV--LTEVGKKMPDKDKQLTIDDRIKLI  154 (251)
T ss_dssp             CHHHHHHHHHHHTCCEEEECCSSSCCCH---------HHHHHHHHHHHHTTCEE--EEEECCSSHHHHTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEECCCCCCCCH---------HHHHHHHHHHHHCCCEE--EECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             6999999999859988997598567898---------99999999998589989--514557888866555999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE
Q ss_conf             87642223467664135675-------1678998999898507703310025410189999998538983
Q gi|254780178|r  203 ERLKELDLKGYAIGGLAVGE-------PQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       203 ~~l~~~~~~G~aIgGl~~ge-------~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl  265 (378)
                      +...+.+.+..+|...++|.       ......+++..+...+|.  |..++|...+.++..++..|+-=
T Consensus       155 ~f~~~tg~d~l~i~A~~~Gt~HG~y~~~~~l~~~~l~~I~~~~~~--plVlHGaSg~~~~~~~i~~g~~K  222 (251)
T 1qwg_A          155 NFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDI--NKVIFEAPQKSQQVAFILKFGSS  222 (251)
T ss_dssp             HHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCG--GGEEEECCSHHHHHHHHHHHCTT
T ss_pred             HHHHHCCCCEEEEEHHHCCCCCCEECCCCCHHHHHHHHHHHHCCC--CCEEEECCCHHHHHHHHHHHCCC
T ss_conf             999966885899840211776122468877018899999984892--02799789856899999997989


No 53 
>>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245)
Probab=52.77  E-value=15  Score=16.68  Aligned_cols=18  Identities=11%  Similarity=-0.182  Sum_probs=7.5

Q ss_pred             HHHHHHHHHCCCCEEEEE
Q ss_conf             999999873289779960
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQL  146 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~L  146 (378)
                      +..++++..-|.+-++.+
T Consensus        28 ~~~i~~l~~~Gv~gi~~~   45 (245)
T 3eb2_A           28 GRLCDDLIQAGVHGLTPL   45 (245)
T ss_dssp             HHHHHHHHHTTCSCBBTT
T ss_pred             HHHHHHHHHCCCCEEEEE
T ss_conf             999999997699989985


No 54 
>>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} (A:)
Probab=52.61  E-value=15  Score=16.66  Aligned_cols=79  Identities=9%  Similarity=0.000  Sum_probs=34.3

Q ss_pred             HHHHHHH-HHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9999998-7328977996012133-2211589999999889999999885135888605540234443668999988764
Q gi|254780178|r  129 EESVHIQ-NLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK  206 (378)
Q Consensus       129 e~~i~~q-~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~  206 (378)
                      .+.++++ ++.|.|-++.+--.-. +.-+.++.++-++++.   +    +- ..+-..+.|+  |+...+.-.+-+++..
T Consensus        27 ~~~i~~li~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~v---~----~~-~~~~pvi~gv--~~~~~~~~i~~a~~a~   96 (293)
T 1f6k_A           27 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAK---D----EA-KDQIALIAQV--GSVNLKEAVELGKYAT   96 (293)
T ss_dssp             HHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHH---H----HH-TTSSEEEEEC--CCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---H----HH-CCCCEEEEEC--CCCCHHHHHHHHHHHH
T ss_conf             99999999828999899783276643479999999999999---9----83-8987399966--8788999999999999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             22234676641
Q gi|254780178|r  207 ELDLKGYAIGG  217 (378)
Q Consensus       207 ~~~~~G~aIgG  217 (378)
                      +.+.++..+.-
T Consensus        97 ~~Ga~~v~i~~  107 (293)
T 1f6k_A           97 ELGYDCLSAVT  107 (293)
T ss_dssp             HHTCSEEEEEC
T ss_pred             HCCCCEEEECC
T ss_conf             65999999788


No 55 
>>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} (A:110-162)
Probab=50.13  E-value=12  Score=17.25  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             54023444366899998876422234676641
Q gi|254780178|r  186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGG  217 (378)
Q Consensus       186 fgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG  217 (378)
                      ||- ||..++-.|+++++-++...|+|-.|-.
T Consensus        15 Fge-~gp~DL~QRrkaadllarrgFdg~siRa   45 (53)
T 3dfg_A           15 FGE-DGPVDLAQRRKAADLLARRGFDGNSIRL   45 (53)
T ss_dssp             HCT-TCCCSHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             389-9999999999999999987999999999


No 56 
>>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} (A:25-247)
Probab=49.06  E-value=17  Score=16.30  Aligned_cols=118  Identities=15%  Similarity=0.171  Sum_probs=61.0

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             12999999987328977996012133221158999999988999999988513588860554023444366899998876
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL  205 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l  205 (378)
                      +.+..-++.....+.|.+.......+...    ..       .+.+++    .......+.++    ...+..    ...
T Consensus        88 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~-------~~~~~~----~~~g~~v~~~~----~~~~~a----~~a  144 (223)
T 1a53_A           88 IVKESQIDDAYNLGADTVLLIVKILTERE----LE-------SLLEYA----RSYGMEPLIEI----NDENDL----DIA  144 (223)
T ss_dssp             CCSHHHHHHHHHHTCSEEEEEGGGSCHHH----HH-------HHHHHH----HTTTCCCEEEE----CSHHHH----HHH
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHCCHHH----HH-------HHHHHH----HHHHHHHHHHC----CCHHHH----HHH
T ss_conf             06767999998615455567686300788----89-------999999----99864677725----899999----999


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             42223467664135675167899899989850770331002-541018999999853898366
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+.+.+++.+++..... .....+...........+.|.+. -|+.+|.++..+.++|.|-+=
T Consensus       145 ~~~g~d~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~vpvia~GGI~~~~dv~~al~~GAdgV~  206 (223)
T 1a53_A          145 LRIGARFIGINSRDLET-LEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFL  206 (223)
T ss_dssp             HHTTCSEEEEESBCTTT-CCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEE
T ss_pred             HHCCCCEEEEECCCHHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf             81685705452467676-554356899998528889869996389999999999977999999


No 57 
>>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} (A:)
Probab=47.80  E-value=18  Score=16.17  Aligned_cols=128  Identities=9%  Similarity=-0.115  Sum_probs=68.5

Q ss_pred             HHHHHHHHHCCCCEEEEEHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             99999987328977996012133221-15899999998899999998851358886055402344436689999887642
Q gi|254780178|r  129 EESVHIQNLLGSDIQMQLDECLALPA-EDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE  207 (378)
Q Consensus       129 e~~i~~q~~lg~DI~~~LD~~~~~~~-~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~  207 (378)
                      ..........+.|.+..-..++.... +......-+....+|..       ..  ....-++-|-...+--.+-++...+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ii~k~~~~~~~i~~~a~~a~~  144 (220)
T 1ub3_A           74 ALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVP-------QA--VLKVILETGYFSPEEIARLAEAAIR  144 (220)
T ss_dssp             HHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHST-------TS--EEEEECCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHCC-------CC--CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999999808987999743414334788999999999997447-------87--3577750252889999999999987


Q ss_pred             HHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             223467664135675--167899899989850770331002-54101899999985389836620
Q gi|254780178|r  208 LDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       208 ~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      .+.+|..+++-.-+.  +.+.+.    .+.+....+.|... =|+-++.|++.++++|.|..=--
T Consensus       145 ~G~dgi~~~~~~~~~~~~~~~l~----~~~~~~~~~i~Ii~~GGIrtg~Dv~k~l~lGAd~V~ig  205 (220)
T 1ub3_A          145 GGADFLKTSTGFGPRGASLEDVA----LLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTS  205 (220)
T ss_dssp             HTCSEEECCCSSSSCCCCHHHHH----HHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHEECCCCCCCCCCCHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             40655233677688887569999----99998667853978389799999999999751771027


No 58 
>>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} (A:95-486)
Probab=47.26  E-value=18  Score=16.11  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHCCC-----HHHHEEC-CCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf             9998876422234676641356751--6789989998985077-----0331002-541018999999853898366200
Q gi|254780178|r  199 SFSAERLKELDLKGYAIGGLAVGEP--QEVMLHILSNVLPILP-----VERPHYL-MGVGTPDDILKSVSYGVDMFDCVM  270 (378)
Q Consensus       199 ~~Sa~~l~~~~~~G~aIgGl~~ge~--~~~~~~ii~~~~~~LP-----~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~  270 (378)
                      .+.|+.+.+.+++|..++|-..+.-  .......+..+...+.     .+.|... =|+.++.+|+.+.++|.|..=...
T Consensus       260 ~~~A~~~~~~G~d~i~v~g~gg~~~~~~~~~~~~lp~v~~~l~~~~~~~~ipiia~GGI~~g~dv~kALaLGAd~V~iG~  339 (392)
T 1kbi_A          260 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGR  339 (392)
T ss_dssp             HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECH
T ss_pred             HHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf             89899998548874465044212246675547679999999986621898079997998977999999982888511519


Q ss_pred             EEECC
Q ss_conf             00023
Q gi|254780178|r  271 PTRAG  275 (378)
Q Consensus       271 ptr~A  275 (378)
                      +...+
T Consensus       340 ~fl~~  344 (392)
T 1kbi_A          340 PFLYA  344 (392)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 59 
>>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* (A:1-197,A:284-332)
Probab=46.73  E-value=15  Score=16.60  Aligned_cols=75  Identities=11%  Similarity=0.154  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             99887642223467664135675--167899899989850770331002-541018999999853898366200000233
Q gi|254780178|r  200 FSAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       200 ~Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ..++.+.+.+.++..+.|...+.  ......+.+..+...  .+.|... -|++++.++..+.++|.|-.=.-.|...+.
T Consensus       121 ~~A~~~~~aGad~I~v~G~~~~~~~~~~~~~~~I~ei~~~--~~iPVIa~GGI~t~~Da~kalalGADaV~VGta~l~a~  198 (246)
T 2z6i_A          121 ALAKRXEKIGADAVIAEGXEAGGHIGKLTTXTLVRQVATA--ISIPVIAAGGIADGEGAAAGFXLGAEAVQVGTRFVVAQ  198 (246)
T ss_dssp             HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--CSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBG
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHC--EEEEEEEECCCCCCCCHHHHHHCCCCEEEECCEEEECC
T ss_conf             9998888736887885177767662114431002020101--20017876333365258999863753135576035420


No 60 
>>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} (A:)
Probab=46.26  E-value=19  Score=16.01  Aligned_cols=147  Identities=16%  Similarity=0.073  Sum_probs=85.3

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EEE-ECCCCCCHH
Q ss_conf             129999999873289779960121332------21158999999988999999988513588860--554-023444366
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLAL------PAEDKELKRAMELSLRWAERSLVAFGNQPGKA--LFG-IVQGGDNIN  196 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~------~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~--lfg-iVqGG~~~d  196 (378)
                      -.....++.....+.+....+--..+.      ..+.....+.+....+++++   .-.+..-..  -+. +..+...++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~  155 (295)
T 1ydn_A           79 VPNXKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAIN---DGLAIRGYVSCVVECPYDGPVTPQ  155 (295)
T ss_dssp             CSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSEETTTEECCHH
T ss_pred             HHCCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCEEEECCCCCCCHHHHHH
T ss_conf             53132011101356408875201468999888510576656665477888764---023443113310256420013344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             8999988764222346766413567516789989998985077033-1002---54101899999985389836620000
Q gi|254780178|r  197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                      ...+.++.+.+.+.+.+.|---.-...-++..+++..+...+|.-. =.|.   +|. -....+.++..|+|.+|++..-
T Consensus       156 ~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~p~~~i~~H~Hnd~Gl-a~An~laAi~aGa~~id~s~~G  234 (295)
T 1ydn_A          156 AVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAXLDAVLAIAPAHSLAGHYHDTGGR-ALDNIRVSLEKGLRVFDASVGG  234 (295)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSC-HHHHHHHHHHHTCCEEEEBTTC
T ss_pred             HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHHHHHHHHHCCCCEEEEECCC
T ss_conf             679998877744853896165003331688999999864048840566225888762-6775999986277789876137


Q ss_pred             ECCC
Q ss_conf             0233
Q gi|254780178|r  273 RAGR  276 (378)
Q Consensus       273 r~Ar  276 (378)
                      .-.|
T Consensus       235 ~Ger  238 (295)
T 1ydn_A          235 LGGC  238 (295)
T ss_dssp             CSCB
T ss_pred             CCCC
T ss_conf             7899


No 61 
>>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* (A:56-415)
Probab=45.26  E-value=20  Score=15.91  Aligned_cols=142  Identities=11%  Similarity=0.020  Sum_probs=73.5

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCH-----HHHHHHHHHHHHHHH----------HHHHHHCCCCCCE-EEEEC
Q ss_conf             1299999998732897799601213322115-----899999998899999----------9988513588860-55402
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAED-----KELKRAMELSLRWAE----------RSLVAFGNQPGKA-LFGIV  189 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~-----k~~~~sv~rT~~w~~----------~~~~~~~~~~~~~-lfgiV  189 (378)
                      .............+.|.+..--.|+.....+     ....+-......+-.          +.++..+...... +..+.
T Consensus       143 ~~~~~~~~~~~~~~~~~i~~n~~cp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vK~~  222 (360)
T 3i65_A          143 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA  222 (360)
T ss_dssp             HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEC
T ss_conf             99999999875013770012056876555423456778999999999999976530121000000012356785799859


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CHHHHHHHHHHHHHCCCHHHHEECC-CCHH
Q ss_conf             344436689999887642223467664135675-----------------1678998999898507703310025-4101
Q gi|254780178|r  190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGE-----------------PQEVMLHILSNVLPILPVERPHYLM-GVGT  251 (378)
Q Consensus       190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge-----------------~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~  251 (378)
                      .|.. .+.-..-++.+.+.+.++..+.+-....                 ....-.+.+..+.+.+..+-|...- |+-+
T Consensus       223 ~~~d-~~~~~~~~~~~~~~Gvd~i~v~~~~~~~~~~~~~~~~~~g~~g~~~~~~~l~~i~~~~~~~~~~i~ii~~GGI~~  301 (360)
T 3i65_A          223 PDLN-QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFS  301 (360)
T ss_dssp             SCCC-HHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCS
T ss_pred             CCCC-HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             9987-668999999999706566132035334555433244568657762778999999999998289983999789899


Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             89999998538983662
Q gi|254780178|r  252 PDDILKSVSYGVDMFDC  268 (378)
Q Consensus       252 P~~i~~~v~~GvDlFD~  268 (378)
                      +.++..++++|.|..-.
T Consensus       302 ~~da~~~l~~GAd~V~i  318 (360)
T 3i65_A          302 GLDALEKIEAGASVCQL  318 (360)
T ss_dssp             HHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHCCCCHHHH
T ss_conf             99999999849879987


No 62 
>>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} (A:)
Probab=45.18  E-value=20  Score=15.90  Aligned_cols=148  Identities=12%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             CHHHHHHHHHHCCCCEEEEEHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCC--EEEEECC-CCCCHH
Q ss_conf             2999999987328977996012133------22115899999998899999998851358-886--0554023-444366
Q gi|254780178|r  127 SPEESVHIQNLLGSDIQMQLDECLA------LPAEDKELKRAMELSLRWAERSLVAFGNQ-PGK--ALFGIVQ-GGDNIN  196 (378)
Q Consensus       127 tpe~~i~~q~~lg~DI~~~LD~~~~------~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~--~lfgiVq-GG~~~d  196 (378)
                      .....++.-...+.|.+..+..+.+      ...+.+...+.+..+.+|+...    .-. .-+  ..|+..- +-..++
T Consensus        82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----G~~v~~~l~~~~~~~d~~~~~~~  157 (307)
T 1ydo_A           82 PNQRGLENALEGGINEACVFXSASETHNRKNINKSTSESLHILKQVNNDAQKA----NLTTRAYLSTVFGCPYEKDVPIE  157 (307)
T ss_dssp             CSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT----TCEEEEEEECTTCBTTTBCCCHH
T ss_pred             CCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEECCCCCCCCCCHHH
T ss_conf             02327998630444358887301265545431054898776677777654032----10001233220466523221067


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             8999988764222346766413567516789989998985077033-1002---54101899999985389836620000
Q gi|254780178|r  197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVMPT  272 (378)
Q Consensus       197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~pt  272 (378)
                      .-.+.++.+.+.+.+.+.+.--.....-++..+++..+...+|.-. =.|.   +|. -....+.++..|+|.+|++.--
T Consensus       158 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~p~~~i~~H~Hn~~Gl-a~An~laAi~aGa~~id~s~~G  236 (307)
T 1ydo_A          158 QVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGT-ALANXVTALQXGITVFDGSAGG  236 (307)
T ss_dssp             HHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSC-HHHHHHHHHHHTCCEEEEBGGG
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC-HHHHHHHHHHCCCEECCCCCCC
T ss_conf             889999999863980785146556788078788898776307863221430678640-9999984754075152556658


Q ss_pred             ECCCCCC
Q ss_conf             0233200
Q gi|254780178|r  273 RAGRHGL  279 (378)
Q Consensus       273 r~Ar~G~  279 (378)
                      .-.|.|.
T Consensus       237 lG~~~g~  243 (307)
T 1ydo_A          237 LGGCPYA  243 (307)
T ss_dssp             CCEETTE
T ss_pred             CCCCCCC
T ss_conf             8778787


No 63 
>>1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} (A:)
Probab=44.26  E-value=20  Score=15.81  Aligned_cols=127  Identities=13%  Similarity=-0.041  Sum_probs=65.8

Q ss_pred             HHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHH
Q ss_conf             999998732897799601213322115899999998899999998851358886055402344-4366899998876422
Q gi|254780178|r  130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG-DNINLRSFSAERLKEL  208 (378)
Q Consensus       130 ~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG-~~~dLR~~Sa~~l~~~  208 (378)
                      ........-+.|....-..+........      .....|+.+..+..+..   .--.++-+| ...+--...++...+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~ii~k~~~~~~~~~~~~~~~~~a  185 (260)
T 1o0y_A          115 HEAIFAVESGADEIDMVINVGMLKAKEW------EYVYEDIRSVVESVKGK---VVKVIIETCYLDTEEKIAACVISKLA  185 (260)
T ss_dssp             HHHHHHHHHTCSEEEEECCHHHHHTTCH------HHHHHHHHHHHHHTTTS---EEEEECCGGGCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEEECCCHHHCCCH------HHHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9999999859987999731253226788------99999999999972523---22133300025819999999999976


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf             234676641356751678998999898507703310025-41018999999853898366
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD  267 (378)
                      +.+|..++|-.-+.  ....+.+..+.+.+..+-|...- |+.++.|++.++++|.|..=
T Consensus       186 ga~~i~~~~~~~~~--~~~~~~l~~~~~~~~~~ipIia~GGI~tg~Dv~kalalGAd~V~  243 (260)
T 1o0y_A          186 GAHFVKTSTGFGTG--GATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIG  243 (260)
T ss_dssp             TCSEEECCCSSSSC--CCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             CCCEEECCCCCCCC--CCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             98868737888888--85789999999986768768787798999999999998518747


No 64 
>>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} (A:)
Probab=43.94  E-value=20  Score=15.78  Aligned_cols=137  Identities=9%  Similarity=-0.054  Sum_probs=74.1

Q ss_pred             HHHCCCCEEEEEHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCC-CCCCEEE-EECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             87328977996012133221158-9999999889999999885135-8886055-4023444366899998876422234
Q gi|254780178|r  135 QNLLGSDIQMQLDECLALPAEDK-ELKRAMELSLRWAERSLVAFGN-QPGKALF-GIVQGGDNINLRSFSAERLKELDLK  211 (378)
Q Consensus       135 q~~lg~DI~~~LD~~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~-~~~~~lf-giVqGG~~~dLR~~Sa~~l~~~~~~  211 (378)
                      ....++|.+..=-.|++....++ .-..+.+...+++.+.++...+ ....... ..+.+....+.-...++.+.+.+.+
T Consensus       161 ~~~~ga~~~~l~~~~~~~~~~~~~~~g~~l~~~~~~~~~ii~~vr~~~~~~~~vk~~~~~~~~~~~~~~~a~~l~~~G~~  240 (336)
T 1f76_A          161 KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPIAVKIAPDLSEEELIQVADSLVRHNID  240 (336)
T ss_dssp             HHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCS
T ss_pred             HHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             53325785454478988756567742577776589999999999975287631899954899989999999999966998


Q ss_pred             HHHHHCCCC-------------------CCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             676641356-------------------75167899899989850770331002-5410189999998538983662000
Q gi|254780178|r  212 GYAIGGLAV-------------------GEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMP  271 (378)
Q Consensus       212 G~aIgGl~~-------------------ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~p  271 (378)
                      ++.+.+-..                   -.........+..+......+-|... =|+.++.++..++++|+|+.-..-+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ipvi~~GGI~~~~da~k~l~~GAD~V~igra  320 (336)
T 1f76_A          241 GVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSG  320 (336)
T ss_dssp             EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf             89999267521133464212345765663236999999999999828995799989999999999999809999997878


No 65 
>>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} (A:)
Probab=43.82  E-value=21  Score=15.77  Aligned_cols=77  Identities=10%  Similarity=0.146  Sum_probs=37.5

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             13322115899999998899999998851358886055402344436689999887642223467664135675167899
Q gi|254780178|r  149 CLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVML  228 (378)
Q Consensus       149 ~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~  228 (378)
                      -++..++.+.+++...--.+|+.+.........-..|+|   |+..++.-   .+.+...++||+.|||.++  ..+.+.
T Consensus       172 Gtg~~as~e~i~~~~~~Ir~~l~~~~~~~~~~~v~IlYG---GSV~~~n~---~~l~~~~~vDG~LvG~asl--~~~~f~  243 (252)
T 2btm_A          172 GTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYG---GSVKPDNI---RDFLAQQQIDGALVGGASL--EPASFL  243 (252)
T ss_dssp             TTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGS--SHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEC---CCCCHHHH---HHHHCCCCCCEEEECHHHC--CHHHHH
T ss_conf             555678826665567889988875316334066858751---89798799---9996688998799425767--989999


Q ss_pred             HHHHH
Q ss_conf             89998
Q gi|254780178|r  229 HILSN  233 (378)
Q Consensus       229 ~ii~~  233 (378)
                      +++..
T Consensus       244 ~Ii~~  248 (252)
T 2btm_A          244 QLVEA  248 (252)
T ss_dssp             HHHHT
T ss_pred             HHHHH
T ss_conf             99998


No 66 
>>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (A:565-727)
Probab=43.49  E-value=20  Score=15.83  Aligned_cols=21  Identities=14%  Similarity=0.028  Sum_probs=18.0

Q ss_pred             EECHHHHHHHHHHCCCCEEEE
Q ss_conf             712999999987328977996
Q gi|254780178|r  125 RVSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus       125 ~ltpe~~i~~q~~lg~DI~~~  145 (378)
                      ..++|+.++....-+||++..
T Consensus        69 ~~~~e~~~~~~~~~~~d~V~i   89 (163)
T 1req_A           69 FQTPEETARQAVEADVHVVGV   89 (163)
T ss_dssp             TBCHHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHHHHHHHHCCCCEEEE
T ss_conf             899999999999769999999


No 67 
>>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} (A:1-213)
Probab=41.63  E-value=6.7  Score=19.04  Aligned_cols=26  Identities=12%  Similarity=0.050  Sum_probs=21.9

Q ss_pred             HHHEEC-CCCHHHHHHHHHHHCCCCEE
Q ss_conf             331002-54101899999985389836
Q gi|254780178|r  241 ERPHYL-MGVGTPDDILKSVSYGVDMF  266 (378)
Q Consensus       241 ~kPr~l-~G~G~P~~i~~~v~~GvDlF  266 (378)
                      +.|... -|+++|.++..++++|+|-+
T Consensus       181 ~ipvia~GGI~t~~d~~~~l~~GAd~V  207 (213)
T 3igs_A          181 GCRVIAEGRYNSPALAAEAIRYGAWAV  207 (213)
T ss_dssp             TCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             881998689899999999998699999


No 68 
>>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} (A:1-212,A:291-326)
Probab=40.83  E-value=23  Score=15.47  Aligned_cols=77  Identities=12%  Similarity=0.118  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             99887642223467664135675--167899899989850770331002-541018999999853898366200000233
Q gi|254780178|r  200 FSAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       200 ~Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ..++.+.+.+.++..++|...+.  ....-.+.+..+..  ..+.|... =|++++.++..++++|.|..=.-.|...+.
T Consensus       135 ~~A~~l~~aGad~i~v~g~~~~~~~~~~~~~~~l~~v~~--~~~iPVia~GGI~t~~Di~kala~GAdaV~iGsa~l~a~  212 (248)
T 3bo9_A          135 SLARXVERAGADAVIAEGXESGGHIGEVTTFVLVNKVSR--SVNIPVIAAGGIADGRGXAAAFALGAEAVQXGTRFVASV  212 (248)
T ss_dssp             HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHH--HCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBS
T ss_pred             HHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHCCCCCEEECCEEEECC
T ss_conf             999989984178200246666556666666888788987--548655763365777899999852963003666067436


Q ss_pred             CC
Q ss_conf             20
Q gi|254780178|r  277 HG  278 (378)
Q Consensus       277 ~G  278 (378)
                      +.
T Consensus       213 ~~  214 (248)
T 3bo9_A          213 QS  214 (248)
T ss_dssp             GG
T ss_pred             HH
T ss_conf             02


No 69 
>>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} (A:)
Probab=40.28  E-value=23  Score=15.41  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=37.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             33221158999999988999999988513588860554023444366899998876422234676641356751678998
Q gi|254780178|r  150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH  229 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~  229 (378)
                      ++..++.+.+++...--.+++.+.........-..|+|   |+..++--.   +.+...++||+.|||.++  +.+.+.+
T Consensus       173 tg~~as~~~i~~~~~~Ir~~l~~~~~~~~a~~i~IlYG---GSV~~~n~~---~l~~~~~iDG~LvG~asl--~~~~f~~  244 (250)
T 1yya_A          173 TGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYG---GSVNPKNFA---DLLSMPNVDGGLVGGASL--ELESFLA  244 (250)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEE---SSCCTTTHH---HHHTSTTCCEEEESGGGS--SHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC---CCCCHHHHH---HHHCCCCCCEEEECHHHC--CHHHHHH
T ss_conf             78777706677778899999997612645377748972---788987999---984778988689425657--9899999


Q ss_pred             HHHHH
Q ss_conf             99989
Q gi|254780178|r  230 ILSNV  234 (378)
Q Consensus       230 ii~~~  234 (378)
                      ++..+
T Consensus       245 ii~~v  249 (250)
T 1yya_A          245 LLRIA  249 (250)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99964


No 70 
>>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} (A:)
Probab=40.21  E-value=17  Score=16.37  Aligned_cols=78  Identities=12%  Similarity=0.114  Sum_probs=35.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             33221158999999988999999988513588860554023444366899998876422234676641356751678998
Q gi|254780178|r  150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH  229 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~  229 (378)
                      ++..++.+.+++...--.+|+.+.........-..|+|   |+...+-   +.+.+...++||+.|||.++.   .++.+
T Consensus       175 tg~~as~~~i~~v~~~Ir~~~~~~~~~~~~~~v~ilYG---GSV~~~N---~~~l~~~~~vDG~LvG~asl~---~~f~~  245 (255)
T 1b9b_A          175 TGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYG---GSIKPDN---FLGLIVQKDIDGGLVGGASLK---ESFIE  245 (255)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEE---SSCCHHH---HTTTSSSTTCCEEEESGGGTS---THHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC---CCCCHHH---HHHHHCCCCCCEEEECCHHCC---HHHHH
T ss_conf             66676557777777888888887517000476428972---8989889---999956779997996013188---78999


Q ss_pred             HHHHHHH
Q ss_conf             9998985
Q gi|254780178|r  230 ILSNVLP  236 (378)
Q Consensus       230 ii~~~~~  236 (378)
                      +++....
T Consensus       246 ii~~~~~  252 (255)
T 1b9b_A          246 LARIMRG  252 (255)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
T ss_conf             9999997


No 71 
>>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A (A:1-397)
Probab=39.46  E-value=24  Score=15.33  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=14.7

Q ss_pred             HHHHHHHCCCCEEEECCEEECCC
Q ss_conf             99999853898366200000233
Q gi|254780178|r  254 DILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       254 ~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      -+-.+++.|+...=|+|+.-...
T Consensus       246 pF~~~~~ag~~~vM~~y~~~~~~  268 (397)
T 3f94_A          246 GYFSAINQGVQSVMASFNSWNGK  268 (397)
T ss_dssp             HHHHHHHTTCSEEEECSSEETTE
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             16666302653211022456997


No 72 
>>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} (A:)
Probab=39.31  E-value=24  Score=15.31  Aligned_cols=19  Identities=26%  Similarity=0.121  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHCCCCEEEE
Q ss_conf             0189999998538983662
Q gi|254780178|r  250 GTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       250 G~P~~i~~~v~~GvDlFD~  268 (378)
                      |.-..++.+..+|.|-+-|
T Consensus       178 g~d~~~~~~l~~G~~G~i~  196 (293)
T 1w3i_A          178 GSDMLIATVASTGLDGNVA  196 (293)
T ss_dssp             CCSTTHHHHHHTTCCEEEC
T ss_pred             CCCHHHHHHHCCCCCEEEE
T ss_conf             4310122332157760120


No 73 
>>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} (A:1-68)
Probab=39.21  E-value=12  Score=17.32  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             HHHHCCCCHHHCCCCCCEEECCCCCC
Q ss_conf             98652742011015772241145432
Q gi|254780178|r   73 RIARLGGLHKFIRWFKPILTDSGGFQ   98 (378)
Q Consensus        73 ~i~~~gGlh~fl~~~~~ilTDSGgfQ   98 (378)
                      +.+++..|..=+.|+.|+.||-|.|=
T Consensus        28 i~~~FP~L~~~i~WNqPmFTdhGTfI   53 (68)
T 2i8d_A           28 XQAQFPQLKLEFKWNQPXFTDHGTFI   53 (68)
T ss_dssp             HHHHCTTCEEEEETTEEEEEETTEEE
T ss_pred             HHHHCCCCHHEEEECCCEEEECCEEE
T ss_conf             99978872204671786299889579


No 74 
>>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} (A:)
Probab=38.69  E-value=25  Score=15.25  Aligned_cols=20  Identities=15%  Similarity=0.066  Sum_probs=9.9

Q ss_pred             ECHHHHHHHHHHCCCCEEEE
Q ss_conf             12999999987328977996
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~  145 (378)
                      +|-|-+.+..+.+|.+.++.
T Consensus       101 yTGEvS~~mL~d~G~~~vii  120 (283)
T 3gvg_A          101 YTGDVSGAFLAKLGCSYVVV  120 (283)
T ss_dssp             CTTCCCHHHHHHTTCCEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHH
T ss_conf             20030199998651014432


No 75 
>>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=38.27  E-value=20  Score=15.84  Aligned_cols=48  Identities=17%  Similarity=0.129  Sum_probs=32.6

Q ss_pred             CCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf             669813368898999886857850899999999999999999999999985998999999999853
Q gi|254780178|r  304 ESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK  369 (378)
Q Consensus       304 ~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~  369 (378)
                      .--|++|++-+-      ..++-.+|            ..+-..||+-|++|.=++-+..|+...+
T Consensus        26 ~lRC~~Cqnqsi------~dSna~~A------------~dmR~~i~~~i~~G~sd~eI~~~lv~RY   73 (84)
T 2hl7_A           26 ELRCPKCQNQDI------ADSNAPIA------------ADLRKQIYGQLQQGKSDGEIVDYMVARY   73 (84)
T ss_dssp             HEECTTSSSCBT------TTCCSHHH------------HHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCC------CCCCCHHH------------HHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf             378887699683------00677889------------9999999999995999899999999970


No 76 
>>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/proteomics initiative; HET: XMP; 2.10A {Pyrococcus horikoshii} (A:16-486)
Probab=35.91  E-value=27  Score=14.96  Aligned_cols=125  Identities=12%  Similarity=0.003  Sum_probs=70.2

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             12999999987328977996012133221158999999988999999988513588860554023444366899998876
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL  205 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l  205 (378)
                      ..+.+.....-.-++|+............        +-...+|.+.      ..+...+++.|+       ...-++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~------~~~~~~~~~~v~-------s~~~a~~a  270 (471)
T 2cu0_A          212 PFDIKRAIELDKAGVDVIVVDTAHAHNLK--------AIKSMKEMRQ------KVDADFIVGNIA-------NPKAVDDL  270 (471)
T ss_dssp             TTCHHHHHHHHHTTCSEEEEECSCCCCHH--------HHHHHHHHHH------TCCSEEEEEEEC-------CHHHHTTC
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCCCCCCH--------HHHHHHHHCC------CCCCEEEEECCC-------CHHHHHHH
T ss_conf             87899999987517856885245444221--------0000122112------332105652357-------78887765


Q ss_pred             HHHHHHHHHHHCCCCCCCHH------HHHHHHHHHHHCCCH-HHHEEC-CCCHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             42223467664135675167------899899989850770-331002-5410189999998538983662000
Q gi|254780178|r  206 KELDLKGYAIGGLAVGEPQE------VMLHILSNVLPILPV-ERPHYL-MGVGTPDDILKSVSYGVDMFDCVMP  271 (378)
Q Consensus       206 ~~~~~~G~aIgGl~~ge~~~------~~~~ii~~~~~~LP~-~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~p  271 (378)
                      .+.+.|+..++|.+.+....      -+...+..+.+.+.. +-|... =|+.+..++..++++|.|-+-.--+
T Consensus       271 ~~~G~D~i~v~~~~~~g~r~~~~~~~~~~~~l~~v~~~~~~~~i~vi~dGGi~~g~dv~kAlalGA~~v~~G~~  344 (471)
T 2cu0_A          271 TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNL  344 (471)
T ss_dssp             TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHEEEEEEEEEEECCCC
T ss_conf             33660045013431114544344454055455544033224575378547645066111366652103450630


No 77 
>>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} (A:1-37,A:122-176,A:224-467)
Probab=35.49  E-value=22  Score=15.52  Aligned_cols=87  Identities=16%  Similarity=0.084  Sum_probs=38.5

Q ss_pred             EEEECCCCCCEEEECHHH-HHHH-HH-HCCCCEEEE-----EHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             021014454158712999-9999-87-328977996-----012133221158-99999998899999998851358886
Q gi|254780178|r  113 VRFRSHIDGSLYRVSPEE-SVHI-QN-LLGSDIQMQ-----LDECLALPAEDK-ELKRAMELSLRWAERSLVAFGNQPGK  183 (378)
Q Consensus       113 v~f~s~~dG~~~~ltpe~-~i~~-q~-~lg~DI~~~-----LD~~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~~~~~  183 (378)
                      +.|-.+-++..+...|.+ +.+. .+ ..+||.++.     +++.++....++ +.++..+.-..|-..      +.+--
T Consensus        73 i~~p~~~~nr~il~~d~E~~~~~l~ei~~~~Dl~ilSGlqml~~~~~dg~~~~~~l~~~~~~l~~l~~~------~i~iH  146 (336)
T 1gc5_A           73 IYVPVFEGNKLKLVHPKDAIREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNILNRY------NVKSH  146 (336)
T ss_dssp             EEEEEECSSCEEEECGGGSCHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHHHHT------TCEEE
T ss_pred             EEEEEECCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH------CCHHH
T ss_conf             687775187345306502108569988503122011347999987799970888999999988788761------31232


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             0554023444366899998876422
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      .=||.+   .++++|+...+-+-..
T Consensus       147 ~ElAs~---~d~~l~~~i~~ilp~V  168 (336)
T 1gc5_A          147 FEFAYT---ANRRVREALVELLPKF  168 (336)
T ss_dssp             EECCCC---CCHHHHHHHHHHGGGC
T ss_pred             EEEHHH---HHHHHHHHHHHHHHHH
T ss_conf             120223---0078999999971441


No 78 
>>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} (A:)
Probab=35.38  E-value=22  Score=15.61  Aligned_cols=38  Identities=21%  Similarity=0.387  Sum_probs=17.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             44436689999887642223467664135675167899899989
Q gi|254780178|r  191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNV  234 (378)
Q Consensus       191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~  234 (378)
                      |+...+--.   +.+...++||+.|||.++.   .++.+++...
T Consensus       229 GSV~~~N~~---~l~~~~~iDG~LVG~asl~---~ef~~ii~~~  266 (275)
T 1mo0_A          229 GSVTADNAA---ELGKKPDIDGFLVGGASLK---PDFVKIINAR  266 (275)
T ss_dssp             SSCCTTTHH---HHTTSTTCCEEEESGGGGS---THHHHHHHHH
T ss_pred             CCCCHHHHH---HHHCCCCCCEEEEEHHHCC---HHHHHHHHHH
T ss_conf             888987999---9856889886994037568---6699999999


No 79 
>>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:19-240)
Probab=34.79  E-value=28  Score=14.85  Aligned_cols=23  Identities=4%  Similarity=-0.074  Sum_probs=13.5

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHH
Q ss_conf             12999999987328977996012
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDE  148 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~  148 (378)
                      .++++...+.+.-.++..+.+..
T Consensus        50 ~s~~E~~~~~~~g~~~~~l~~~~   72 (222)
T 1xfc_A           50 ATVDEALALRADGITAPVLAWLH   72 (222)
T ss_dssp             SCHHHHHHHHHTTCCSCEEECCC
T ss_pred             EEHHHHHHHHHCCCCCCEEEEEC
T ss_conf             27999999997099886699846


No 80 
>>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} (A:1-32,A:117-171,A:218-457)
Probab=34.26  E-value=8.9  Score=18.20  Aligned_cols=65  Identities=14%  Similarity=0.019  Sum_probs=27.3

Q ss_pred             HHHCCCCEEEEE-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             873289779960-12133221158999999988999999988513588860554023444366899998876422
Q gi|254780178|r  135 QNLLGSDIQMQL-DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL  208 (378)
Q Consensus       135 q~~lg~DI~~~L-D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~  208 (378)
                      +-..+||.++.= =.........++.++..+.-..|-..      ..+--.=||-+   .+.++|+.-.+-+-..
T Consensus        94 e~~~~pDl~iiSGlqmld~~~~~e~~~~~~~~l~~~~~~------~i~iHlElAs~---~d~~l~~~i~~ilp~V  159 (327)
T 1l2l_A           94 EIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDL------GIRAHLEFAFT---PDEVVRLEIVKLLKHF  159 (327)
T ss_dssp             HHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHT------TCEEEEECCCC---SSHHHHHHHHHHGGGC
T ss_pred             HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC------CCCEEEEECCC---CHHHHHHHHHHHCCCC
T ss_conf             762278889995645554565258999999999844867------87179985445---0999999999742406


No 81 
>>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:1-110,A:153-365)
Probab=34.20  E-value=29  Score=14.78  Aligned_cols=71  Identities=11%  Similarity=0.055  Sum_probs=36.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCC
Q ss_conf             344436689999887642223467664135675------1678998999898507703310025-410189999998538
Q gi|254780178|r  190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGE------PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYG  262 (378)
Q Consensus       190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge------~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~G  262 (378)
                      .|+...+.-.+-++.+.+.+++...+.+-....      ..+...++...      ...|..+- |+.+|++...+++.|
T Consensus       199 ~~~~~~~e~~~~~~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~i~~~------~~~pvi~nG~i~s~~~a~~~l~~g  272 (323)
T 2gou_A          199 NGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALRE------AYQGVLIYAGRYNAEKAEQAINDG  272 (323)
T ss_dssp             TSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHH------HCCSEEEEESSCCHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCHHHHHHHHHCC
T ss_conf             79765530567789998764158407852355644477863789999998------548808998896999999999879


Q ss_pred             -CCEE
Q ss_conf             -9836
Q gi|254780178|r  263 -VDMF  266 (378)
Q Consensus       263 -vDlF  266 (378)
                       +|+.
T Consensus       273 ~~D~V  277 (323)
T 2gou_A          273 LADMI  277 (323)
T ss_dssp             SCSEE
T ss_pred             CCCHH
T ss_conf             97668


No 82 
>>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} (A:164-276)
Probab=33.33  E-value=29  Score=14.74  Aligned_cols=63  Identities=11%  Similarity=-0.045  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             88764222346766413567516789989998985077033100254101899999985389836620
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      +++..+.+.|...++-+.    .+.+.+.+..... .-++.|....|.=+|+++...++.|+|.+=..
T Consensus        47 ~~~a~~~gaD~i~~~~~~----~~~~~~~v~~~~~-~~~~ipi~a~GGIt~~~i~~~~~aGad~i~vg  109 (113)
T 2jbm_A           47 AVQAAEAGADLVLLDNFK----PEELHPTATVLKA-QFPSVAVEASGGITLDNLPQFCGPHIDVISMG  109 (113)
T ss_dssp             HHHHHHTTCSEEEEESCC----HHHHHHHHHHHHH-HCTTSEEEEESSCCTTTHHHHCCTTCCEEECT
T ss_pred             HHHHHHCCCCEEEECCCC----HHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCEEECC
T ss_conf             999997599899975899----9999999999846-48966999989998999999997399999859


No 83 
>>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:)
Probab=33.23  E-value=18  Score=16.22  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=26.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             332211589999999889999999885135888605540234443668999988764222346766413567
Q gi|254780178|r  150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG  221 (378)
Q Consensus       150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g  221 (378)
                      ++..++.+.+++...--.+|+.+.........-..|+|   |+..++--.   +.+...++||+.|||.++.
T Consensus       171 tg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~v~IlYG---GSV~~~n~~---~l~~~~~vDG~LvG~asl~  236 (259)
T 2i9e_A          171 TGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYG---GSVTAANCK---ELASQPDIDGFLVGGASLK  236 (259)
T ss_dssp             SSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEC---SCCCTTTHH---HHHTSTTCCEEEESGGGGS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEC---CCCCHHHHH---HHHCCCCCCEEEEEHHHCC
T ss_conf             67666614567788899988863014545367868861---787771699---9956779896996016579


No 84 
>>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:)
Probab=32.90  E-value=30  Score=14.65  Aligned_cols=76  Identities=11%  Similarity=-0.022  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCE
Q ss_conf             234443668999988764222346766413567--5167899899989850770331002-5410189999998538983
Q gi|254780178|r  189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVG--EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDM  265 (378)
Q Consensus       189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g--e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDl  265 (378)
                      .-++.......+-+......+.+...++|-..+  -+.+....+..   .....+-|... =|+.++.|++.+.++|.|.
T Consensus       141 ~~~~~~~~~~a~~a~~a~~~g~~~i~~~g~~~~~~~~~~~~~~~~~---~~~~~~i~iia~GGI~t~~Dv~kaL~lGA~~  217 (234)
T 1n7k_A          141 EAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRLAS---LAKPLGMGVKASGGIRSGIDAVLAVGAGADI  217 (234)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHHHH---HHGGGTCEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             EHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHH---HHCCCCCEEECCCCCCCHHHHHHHHHCCCCE
T ss_conf             3101346899999999998086314634676778876599999999---7148991387313879999999999805630


Q ss_pred             EE
Q ss_conf             66
Q gi|254780178|r  266 FD  267 (378)
Q Consensus       266 FD  267 (378)
                      +=
T Consensus       218 V~  219 (234)
T 1n7k_A          218 IG  219 (234)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             41


No 85 
>>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} (A:)
Probab=31.65  E-value=32  Score=14.51  Aligned_cols=19  Identities=5%  Similarity=-0.003  Sum_probs=10.8

Q ss_pred             CCCCHHHHHHCCCCEEEEE
Q ss_conf             8868899986099899932
Q gi|254780178|r   43 KAMYFDQVRDLGADVILGN   61 (378)
Q Consensus        43 ~~lt~~~l~~~g~~~il~N   61 (378)
                      -.+++.+|+++|+..++-+
T Consensus        83 GevS~~mL~e~G~~~viiG  101 (261)
T 1m6j_A           83 GEVHVGMLVDCQVPYVILG  101 (261)
T ss_dssp             TCCBHHHHHHTTCCEEEES
T ss_pred             CCCCHHHHHHCCCCEEEEE
T ss_conf             5367999997298669970


No 86 
>>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} (A:)
Probab=29.67  E-value=34  Score=14.29  Aligned_cols=83  Identities=8%  Similarity=-0.024  Sum_probs=51.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---HHHHEECCCCHHHHHHHHHHH
Q ss_conf             05540234443668999988764222346766413567516789989998985077---033100254101899999985
Q gi|254780178|r  184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILP---VERPHYLMGVGTPDDILKSVS  260 (378)
Q Consensus       184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP---~~kPr~l~G~G~P~~i~~~v~  260 (378)
                      .-+|.-+|-...+.+............+ ........+|+.+++.+-+......+.   .++...+.+-|.....+.+-.
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Es~~~~~~r~~~~~~~l~~~~~~~~iliVtHg~~i~~~~~~~  161 (207)
T 1h2e_A           83 IHLGDWEGKTHDEIRQMDPIAFDHFWQA-PHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAF  161 (207)
T ss_dssp             CCCGGGTTCBHHHHHHHCHHHHHHHHHC-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH
T ss_conf             2358634643222222688999987616-655389999878888999999999999844899789997589999999999


Q ss_pred             CCCCEEE
Q ss_conf             3898366
Q gi|254780178|r  261 YGVDMFD  267 (378)
Q Consensus       261 ~GvDlFD  267 (378)
                      +|++..+
T Consensus       162 ~~~~~~~  168 (207)
T 1h2e_A          162 KDTPLDH  168 (207)
T ss_dssp             TTCCGGG
T ss_pred             HCCCHHH
T ss_conf             4959899


No 87 
>>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235)
Probab=29.09  E-value=35  Score=14.23  Aligned_cols=32  Identities=6%  Similarity=-0.210  Sum_probs=16.2

Q ss_pred             CCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             770331002-54101899999985389836620
Q gi|254780178|r  238 LPVERPHYL-MGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       238 LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      +-...|++. ++......+....++|.|-+-|.
T Consensus       200 ~~~~~~~~~i~~G~d~~~l~~~l~~Ga~G~is~  232 (235)
T 2hmc_A          200 ITSRDDEVTLXIGVDTAVVHGFVNCGATGAITG  232 (235)
T ss_dssp             TSCSSSSCEEEECSGGGHHHHHHHSCCCEEEES
T ss_pred             HHCCCCCEEECCCCCHHHHHHHHCCCCCEEEEC
T ss_conf             641575335436872145566523578768732


No 88 
>>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} (A:)
Probab=27.43  E-value=37  Score=14.08  Aligned_cols=29  Identities=24%  Similarity=0.260  Sum_probs=21.7

Q ss_pred             CHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             70331002-541018999999853898366
Q gi|254780178|r  239 PVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       239 P~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      ..+.|... =|+++|+++..+.++|.|-.-
T Consensus       204 ~~~ipViaeGgI~tp~da~~a~~lGA~aV~  233 (297)
T 3fem_A          204 KLPVVNFAAGGVATPADAALLMQLGCDGVF  233 (297)
T ss_dssp             SCSSEEEBCSSCCSHHHHHHHHHTTCSCEE
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCEEE
T ss_conf             988467546885883779999972898798


No 89 
>>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans c-125} PDB: 1ynq_A* (A:)
Probab=27.18  E-value=37  Score=14.01  Aligned_cols=16  Identities=31%  Similarity=0.279  Sum_probs=6.3

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             1589999999889999
Q gi|254780178|r  155 EDKELKRAMELSLRWA  170 (378)
Q Consensus       155 ~~k~~~~sv~rT~~w~  170 (378)
                      +++.++++++.+.+.+
T Consensus       113 ~~~~i~~~~~~SL~rL  128 (317)
T 1ynp_A          113 SKAYIKEAVKDSLRRL  128 (317)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             5899999999999995


No 90 
>>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} (A:)
Probab=25.93  E-value=39  Score=13.86  Aligned_cols=33  Identities=9%  Similarity=-0.002  Sum_probs=27.6

Q ss_pred             CCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf             077033100254101899999985389836620
Q gi|254780178|r  237 ILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       237 ~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      ....+.|...-|.-+|.++..+++.|+|.+=--
T Consensus       169 ~~~~~~~v~~~GGi~~~~~~~~~~~GAdgvvvG  201 (230)
T 1tqj_A          169 ERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAG  201 (230)
T ss_dssp             HHTCCCEEEEESSCCTTTTHHHHHHTCCEEEES
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf             147882499983889888999998799999978


No 91 
>>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, glycerol complex; 1.30A {Thermus thermophilus HB8} (A:)
Probab=25.77  E-value=40  Score=13.84  Aligned_cols=38  Identities=11%  Similarity=-0.077  Sum_probs=32.9

Q ss_pred             CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             70331002541018999999853898366200000233
Q gi|254780178|r  239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      ....+.+...+.+|.++-.++.+|||.+-+..|....+
T Consensus       184 ~~g~~v~~wtvn~~~~~~~~~~~Gvd~i~TD~p~~~~~  221 (224)
T 1vd6_A          184 KRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLP  221 (224)
T ss_dssp             HTTCEEEEECCCCHHHHHHHHHTTCSEEEESCHHHHTT
T ss_pred             HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             87999999899989999999975989999896999855


No 92 
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:258-575)
Probab=25.06  E-value=38  Score=13.97  Aligned_cols=214  Identities=16%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             HHHHHCCCCEE-EEEHHHHHHC----CCHHHH-HHCCCCHHHCCCCCCE--EECCCCCCCCHHHHCCCC-----CCCCEE
Q ss_conf             99986099899-9322665738----768998-6527420110157722--411454321012210223-----333102
Q gi|254780178|r   48 DQVRDLGADVI-LGNAYHLMLR----PGAERI-ARLGGLHKFIRWFKPI--LTDSGGFQVMSLSKLCSI-----DEQGVR  114 (378)
Q Consensus        48 ~~l~~~g~~~i-l~Ntyhl~~~----pg~~~i-~~~gGlh~fl~~~~~i--lTDSGgfQv~sl~~~~~~-----~~~Gv~  114 (378)
                      +...+.|++.| |.-|=++++.    |..+.. +.+..+-+.+.-..++  +.|.|+-...++.....-     ...|+.
T Consensus        25 ~~a~~~ga~GIGL~RtE~l~~~~~~~p~e~~q~~~y~~i~~a~~~~pV~iRtlD~g~dk~~~~~~~~~E~NP~LG~RGiR  104 (318)
T 2hwg_A           25 EGAERNGAEGVGLYRTEFLFXDRDALPTEEEQFAAYKAVAEACGSQAVIVRTXDIGGDKELPYXNFPKEENPFLGWRAIR  104 (318)
T ss_dssp             HHHHHTTCSSEEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             87776320424556576653012358525678998887765356635999764777543444346643412665420565


Q ss_pred             EECCCCCCEEEECHHHHHHHHH--HCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCC
Q ss_conf             1014454158712999999987--3289779960121332211589999999889999999885135888605540-234
Q gi|254780178|r  115 FRSHIDGSLYRVSPEESVHIQN--LLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQG  191 (378)
Q Consensus       115 f~s~~dG~~~~ltpe~~i~~q~--~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqG  191 (378)
                      +         .+...+..+.|-  .++.-....+....|.-........+.+.-.+..+++.+.........-+|+ |+ 
T Consensus       105 ~---------~l~~p~~f~~QlrAi~rA~~~~~~~i~~pmv~~v~e~~~~~~~~~~~~~~l~~~g~~~~~~~~iG~MiE-  174 (318)
T 2hwg_A          105 I---------AXDRREILRDQLRAILRASAFGKLRIXFPXIISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVXVE-  174 (318)
T ss_dssp             H---------HTTCHHHHHHHHHHHHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEEC-
T ss_pred             H---------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC-
T ss_conf             5---------300667988899999976422475466504566178999999999999999983787566642789825-


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCC-----------HHHHHHHHHHHHHCC-CHHHHEECCC--CH
Q ss_conf             44366899998876422234676641-------356751-----------678998999898507-7033100254--10
Q gi|254780178|r  192 GDNINLRSFSAERLKELDLKGYAIGG-------LAVGEP-----------QEVMLHILSNVLPIL-PVERPHYLMG--VG  250 (378)
Q Consensus       192 G~~~dLR~~Sa~~l~~~~~~G~aIgG-------l~~ge~-----------~~~~~~ii~~~~~~L-P~~kPr~l~G--~G  250 (378)
                        -+-. -..++++++ -+|++.||-       |++.-.           ...+.+.+..+...- -.++|..+.|  +|
T Consensus       175 --vPsa-~l~~d~~~~-~~DF~SIGTNDLtQy~la~DR~n~~v~~l~d~~~pavl~~i~~vi~~a~~~g~~V~vCGe~a~  250 (318)
T 2hwg_A          175 --TPAA-ATIARHLAK-EVDFFSIGTNDLTQYTLAVDRGNDXISHLYQPXSPSVLNLIKQVIDASHAEGKWTGXCGELAG  250 (318)
T ss_dssp             --SHHH-HHTHHHHHT-TCSEEEECHHHHHHHHHTCCTTCGGGGGGCCSSSHHHHHHHHHHHHHHHHTTCEEEECSTTTT
T ss_pred             --CHHH-HHHHHHHHH-HHHEEEECCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             --5389-998999997-610656435568889887436871233106867889999999999999971998999278667


Q ss_pred             HHHHHHHHHHCCCCEEEECCEEECCC
Q ss_conf             18999999853898366200000233
Q gi|254780178|r  251 TPDDILKSVSYGVDMFDCVMPTRAGR  276 (378)
Q Consensus       251 ~P~~i~~~v~~GvDlFD~~~ptr~Ar  276 (378)
                      +|..+..++.+|||-| |+.|....+
T Consensus       251 ~p~~~~~L~~lGi~~l-Sv~p~~i~~  275 (318)
T 2hwg_A          251 DERATLLLLGXGLDEF-SXSAISIPR  275 (318)
T ss_dssp             CTTTHHHHHHTTCCEE-EECGGGHHH
T ss_pred             CHHHHHHHHHCCCCEE-EECHHHHHH
T ss_conf             9899999997799989-988577999


No 93 
>>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:15-237)
Probab=24.99  E-value=41  Score=13.75  Aligned_cols=138  Identities=12%  Similarity=0.011  Sum_probs=54.1

Q ss_pred             ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-------CCC
Q ss_conf             1299999998732897799601213322115899------999998899999998851358886055402-------344
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKEL------KRAMELSLRWAERSLVAFGNQPGKALFGIV-------QGG  192 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~------~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-------qGG  192 (378)
                      .++++.....+.--++..+.+.............      -.|.+.-.+|++.+... ... ......+-       .+|
T Consensus        50 as~~E~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~vds~~~l~~l~~~a~~~-~~~-~~v~i~i~~g~~r~g~~g  127 (223)
T 1vfs_A           50 ATPEEALELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAA-GRT-ARIQLXADTGLGRNGCQP  127 (223)
T ss_dssp             SSHHHHHHHHHTTCCSEEEECCCCTTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHH-TSC-EEEEEEBCSSCCSSSBCH
T ss_pred             CCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHC-CCC-CEEEEEECCCCCCCCCCC
T ss_conf             369999999970899985898158505688865412230206599999999765513-676-328999527777567371


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCC--CC---CCH----HHHHHHHHHHHHCCCHHHH-EECCCCHHHHHHHHHHHCC
Q ss_conf             436689999887642223467664135--67---516----7899899989850770331-0025410189999998538
Q gi|254780178|r  193 DNINLRSFSAERLKELDLKGYAIGGLA--VG---EPQ----EVMLHILSNVLPILPVERP-HYLMGVGTPDDILKSVSYG  262 (378)
Q Consensus       193 ~~~dLR~~Sa~~l~~~~~~G~aIgGl~--~g---e~~----~~~~~ii~~~~~~LP~~kP-r~l~G~G~P~~i~~~v~~G  262 (378)
                      ...+.....++.+.+.+  +.-+-|+.  .+   ++.    +...+.+..+...+....+ .-..-+|.=..+......+
T Consensus       128 ~~~~~~~~~~~~~~~~~--~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~g~g~~~~~~~~~~  205 (223)
T 1vfs_A          128 ADWAELVGAAVAAQAEG--TVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETH  205 (223)
T ss_dssp             HHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGC
T ss_pred             HHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHC
T ss_conf             37899988766542168--7646899860233443202778999999999999998727886056631331003582104


Q ss_pred             CCEEE
Q ss_conf             98366
Q gi|254780178|r  263 VDMFD  267 (378)
Q Consensus       263 vDlFD  267 (378)
                      +|+.-
T Consensus       206 ~~~vr  210 (223)
T 1vfs_A          206 FDLVR  210 (223)
T ss_dssp             SSEEE
T ss_pred             CCCCC
T ss_conf             86025


No 94 
>>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} (A:)
Probab=24.77  E-value=41  Score=13.72  Aligned_cols=198  Identities=19%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             CCCCCHHHH-------HHCCCCEEEEEHHHHHHCCC------HHHHHHCCCCHHHC-CCCCCEEECCCCCCCCHHHHCCC
Q ss_conf             688688999-------86099899932266573876------89986527420110-15772241145432101221022
Q gi|254780178|r   42 VKAMYFDQV-------RDLGADVILGNAYHLMLRPG------AERIARLGGLHKFI-RWFKPILTDSGGFQVMSLSKLCS  107 (378)
Q Consensus        42 v~~lt~~~l-------~~~g~~~il~Ntyhl~~~pg------~~~i~~~gGlh~fl-~~~~~ilTDSGgfQv~sl~~~~~  107 (378)
                      .+..+++.+       .+.|++++=.|.  -.-+|+      .+.++....+=+.+ ..+-||.-||--.++..-+    
T Consensus        20 ~~~~~~~~~~~~a~~~~~~GAdiIDig~--~st~P~~~~v~~~ee~~r~~~vv~~i~~~~vpisIDt~~~~v~~~a----   93 (266)
T 1ad1_A           20 GKFNNVESAVTRVKAMMDEGADIIDVGG--VSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEAC----   93 (266)
T ss_dssp             TTTCSHHHHHHHHHHHHHTTCSEEEEES--CCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHH----
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCEECCCHHHHHHH----
T ss_conf             7588999999999999987998999788--6179999878999998731771123214575203003687889999----


Q ss_pred             CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEE-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             333310210144541587129999999873289779960-1213322115899999998899999998851358886055
Q gi|254780178|r  108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQL-DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF  186 (378)
Q Consensus       108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~L-D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf  186 (378)
                       -+.|+.+-+.++|....   ++..+....-++-++... ++.+.+....++.....+....++.++    .-...+.++
T Consensus        94 -l~~G~~iINsisg~~~~---~~~~~l~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----Gi~~~~Iii  165 (266)
T 1ad1_A           94 -LKLGVDIINDQWAGLYD---HRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIA----GIPSNKIWL  165 (266)
T ss_dssp             -HHTTCCEEEETTTTSSC---THHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHT----TCCGGGEEE
T ss_pred             -HHCCCCEEECCCCCCCC---CCHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCEEEE
T ss_conf             -73697675142434455---2045576404886156422035432111002466788999999851----145235886


Q ss_pred             EECCC-CCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHCC-----CHHHHEECCCCHHHHHHHHHH
Q ss_conf             40234-443668999988764222346766-41356751678998999898507-----703310025410189999998
Q gi|254780178|r  187 GIVQG-GDNINLRSFSAERLKELDLKGYAI-GGLAVGEPQEVMLHILSNVLPIL-----PVERPHYLMGVGTPDDILKSV  259 (378)
Q Consensus       187 giVqG-G~~~dLR~~Sa~~l~~~~~~G~aI-gGl~~ge~~~~~~~ii~~~~~~L-----P~~kPr~l~G~G~P~~i~~~v  259 (378)
                      =|.-| +.....-......+.++...|+.+ -|++    .-      .+..+.+     |.++.     .++-.-...++
T Consensus       166 DPg~gf~~~~~~~~~~~~~~~~~~~~~~pil~G~S----nk------sf~~~~~~~~~~~~~r~-----~~t~~~~~~a~  230 (266)
T 1ad1_A          166 DPGIGFAKTRNEEAEVMARLDELVATEYPVLLATS----RK------RFTKEMMGYDTTPVERD-----EVTAATTAYGI  230 (266)
T ss_dssp             ECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEECCT----TS------HHHHTTSSSCCCGGGGH-----HHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC----HH------HHHHHHHCCCCCHHHHH-----HHHHHHHHHHH
T ss_conf             15767442311079999887776426996465310----99------99998757999878850-----89999999999


Q ss_pred             HCCCCEEEE
Q ss_conf             538983662
Q gi|254780178|r  260 SYGVDMFDC  268 (378)
Q Consensus       260 ~~GvDlFD~  268 (378)
                      ..|+|++=.
T Consensus       231 ~~G~d~~rv  239 (266)
T 1ad1_A          231 MKGVRAVRV  239 (266)
T ss_dssp             HHTCCEEEE
T ss_pred             HCCCCEEEE
T ss_conf             879989994


No 95 
>>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} (A:)
Probab=24.75  E-value=41  Score=13.72  Aligned_cols=64  Identities=9%  Similarity=0.070  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             88764222346766413567-----5167899899989850770331002-541018999999853898366
Q gi|254780178|r  202 AERLKELDLKGYAIGGLAVG-----EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       202 a~~l~~~~~~G~aIgGl~~g-----e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      ++.+.+.+.++..+++...+     .......+++..+..  ..+.|... -|+++|.++..+.++|.|..=
T Consensus       149 a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ipii~~GGI~~~~dv~~al~~GAd~V~  218 (248)
T 1geq_A          149 LKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKR--ICRNKVAVGFGVSKREHVVSLLKEGANGVV  218 (248)
T ss_dssp             HHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHH--HCSSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             9999744886399842667778764320467899999985--258973888154999999999864899999


No 96 
>>3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} (A:1-65,A:123-313)
Probab=24.67  E-value=42  Score=13.71  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC
Q ss_conf             7033100254101899999985389836620000023
Q gi|254780178|r  239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG  275 (378)
Q Consensus       239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A  275 (378)
                      -.++..+..++-+|.++-.+.++|||-.-+..|.+..
T Consensus       209 ~~G~~v~~WTvn~~~~~~~~~~~GVdgIiTD~p~~~~  245 (256)
T 3l12_A          209 DLGLIVLTWTVNEPEDIRRXATTGVDGIVTDYPGRTQ  245 (256)
T ss_dssp             HTTCEEEEBCCCSHHHHHHHHHHTCSEEEESCHHHHH
T ss_pred             HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             8799899979998999999986599999978399999


No 97 
>>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} (A:)
Probab=24.46  E-value=42  Score=13.68  Aligned_cols=29  Identities=14%  Similarity=-0.035  Sum_probs=20.6

Q ss_pred             CHHHHEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             70331002541018999999853898366
Q gi|254780178|r  239 PVERPHYLMGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      -.+.|...-|-=+|.++..+.+.|.|.+=
T Consensus       148 ~~~ipi~a~GGI~~~~i~~~l~~Ga~~v~  176 (205)
T 1wa3_A          148 FPNVKFVPTGGVNLDNVCEWFKAGVLAVG  176 (205)
T ss_dssp             CTTCEEEEBSSCCTTTHHHHHHHTCSCEE
T ss_pred             CCCCCEEEECCCCHHHHHHHHHCCCEEEE
T ss_conf             35785787568888999999978992999


No 98 
>>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} (A:16-235)
Probab=24.26  E-value=42  Score=13.66  Aligned_cols=74  Identities=8%  Similarity=-0.014  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCC-------HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCC
Q ss_conf             443668999988764222346766413--56751-------678998999898507703310025410189999998538
Q gi|254780178|r  192 GDNINLRSFSAERLKELDLKGYAIGGL--AVGEP-------QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYG  262 (378)
Q Consensus       192 G~~~dLR~~Sa~~l~~~~~~G~aIgGl--~~ge~-------~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~G  262 (378)
                      |...+.-..-++.+.+.  ++.-+-|+  +.+..       .+....+..............++...|.-..+......+
T Consensus       125 G~~~~~~~~~~~~~~~~--~~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~  202 (220)
T 3co8_A          125 RSKKDLKDEIEFLQEHS--DHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIXPRYVHVXNSGAAXYHSKELPGC  202 (220)
T ss_dssp             CSHHHHHHHHHHHHHCT--TTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCTTS
T ss_pred             CCHHHHHHHHHHHHHHC--CCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCC
T ss_conf             72567899999986532--3322022010111235443057889999999999875410215653227663471115654


Q ss_pred             CCEEE
Q ss_conf             98366
Q gi|254780178|r  263 VDMFD  267 (378)
Q Consensus       263 vDlFD  267 (378)
                      .|+.-
T Consensus       203 ~~~vR  207 (220)
T 3co8_A          203 NSIAR  207 (220)
T ss_dssp             CSEEE
T ss_pred             CCCCC
T ss_conf             32016


No 99 
>>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* (A:)
Probab=24.05  E-value=43  Score=13.63  Aligned_cols=37  Identities=19%  Similarity=0.133  Sum_probs=28.2

Q ss_pred             HHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             989850770331002-5410189999998538983662
Q gi|254780178|r  232 SNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       232 ~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~  268 (378)
                      .......+.+.|... .|+++|+++..+.++|+|-+=.
T Consensus       200 ~~~~~~~~~~~~viae~gi~tpeda~~~~e~Gadavlv  237 (297)
T 2zbt_A          200 KWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFV  237 (297)
T ss_dssp             HHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             99999689981564267868837899999748988987


No 100
>>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ... (A:)
Probab=23.99  E-value=43  Score=13.63  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=32.9

Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             21332211589999999889999999885135888605540234443668999988764222346766413567516789
Q gi|254780178|r  148 ECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVM  227 (378)
Q Consensus       148 ~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~  227 (378)
                      .-|+..++.+.+++...--.+|+.+.........-..|+|   |+...+--   .+.+...++||+.|||.++.   .++
T Consensus       172 IGtg~~as~~~i~~~~~~Ir~~~~~~~~~~~~~~v~ilYG---GSV~~~N~---~~l~~~~~vDG~LvG~asl~---~~f  242 (250)
T 2j27_A          172 IGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYG---GSVNGKNA---RTLYQQRDVNGFLVGGASLK---PEF  242 (250)
T ss_dssp             TTSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGGS---TTH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEC---CCCCHHHH---HHHHCCCCCCEEEECHHHCC---HHH
T ss_conf             2655445505567777889999998513213377748971---89898799---99966889997895226478---799


Q ss_pred             HHHHHH
Q ss_conf             989998
Q gi|254780178|r  228 LHILSN  233 (378)
Q Consensus       228 ~~ii~~  233 (378)
                      .+|+..
T Consensus       243 ~~Ii~~  248 (250)
T 2j27_A          243 VDIIKA  248 (250)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
T ss_conf             999996


No 101
>>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} (A:54-443)
Probab=23.70  E-value=43  Score=13.59  Aligned_cols=79  Identities=14%  Similarity=0.147  Sum_probs=49.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----C------------HHHHHHHHHHHHHCCCHHHHEEC-CCCH
Q ss_conf             2344436689999887642223467664135675-----1------------67899899989850770331002-5410
Q gi|254780178|r  189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE-----P------------QEVMLHILSNVLPILPVERPHYL-MGVG  250 (378)
Q Consensus       189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge-----~------------~~~~~~ii~~~~~~LP~~kPr~l-~G~G  250 (378)
                      +-++.....-..-++...+.+.+|+.+.|-....     .            .....+++..+...+...-|... =|+-
T Consensus       251 ~~~~~~~~~~~~~a~~~~~~g~~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ii~~GGI~  330 (390)
T 1tv5_A          251 LAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIF  330 (390)
T ss_dssp             ECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCC
T ss_pred             ECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             69998714679999998750651243034434665421124555664415468999999999999708997299989979


Q ss_pred             HHHHHHHHHHCCCCEEE
Q ss_conf             18999999853898366
Q gi|254780178|r  251 TPDDILKSVSYGVDMFD  267 (378)
Q Consensus       251 ~P~~i~~~v~~GvDlFD  267 (378)
                      ++.|++.++++|+|..=
T Consensus       331 ~~~Dv~kala~GAd~V~  347 (390)
T 1tv5_A          331 SGLDALEKIEAGASVCQ  347 (390)
T ss_dssp             SHHHHHHHHHTTEEEEE
T ss_pred             CHHHHHHHHHCCCCHHH
T ss_conf             99999999985997998


No 102
>>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:10-225)
Probab=23.55  E-value=44  Score=13.57  Aligned_cols=78  Identities=10%  Similarity=0.096  Sum_probs=34.8

Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCC---C----HHHHHHHHHHHHHCCCHHHHEE-CCCCHHHHHHHH
Q ss_conf             02344436689999887642223467664135--675---1----6789989998985077033100-254101899999
Q gi|254780178|r  188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLA--VGE---P----QEVMLHILSNVLPILPVERPHY-LMGVGTPDDILK  257 (378)
Q Consensus       188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~--~ge---~----~~~~~~ii~~~~~~LP~~kPr~-l~G~G~P~~i~~  257 (378)
                      .-.+|..++--..-++.+.+.+  +.-+-|+.  .+.   +    .+...+.+......+....+.. ..-+|.=..+..
T Consensus       118 ~~r~G~~~~~~~~~~~~~~~~~--~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ig~~~~~~~  195 (216)
T 2dy3_A          118 LHRSGVDEQEWEGVFSALAAAP--HIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLT  195 (216)
T ss_dssp             SCSSSBCHHHHHHHHHHHHTCT--TEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHC
T ss_conf             3235888899999988764135--41245433331024411203579999999999999876278651444302023312


Q ss_pred             HHHCCCCEEE
Q ss_conf             9853898366
Q gi|254780178|r  258 SVSYGVDMFD  267 (378)
Q Consensus       258 ~v~~GvDlFD  267 (378)
                      +...|.|+..
T Consensus       196 ~~~~~~~~vr  205 (216)
T 2dy3_A          196 RSDLHMEMVR  205 (216)
T ss_dssp             CGGGCTTEEC
T ss_pred             CCCCCCCEEC
T ss_conf             6311366312


No 103
>>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:1-240)
Probab=23.40  E-value=29  Score=14.74  Aligned_cols=37  Identities=16%  Similarity=0.099  Sum_probs=26.1

Q ss_pred             HHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             99989850770331002-541018999999853898366
Q gi|254780178|r  230 ILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       230 ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+....+.++.+.|+.. .|+.+|.++ .++++|.|..=
T Consensus       197 ~~~~l~~~~~~~ipVia~GGI~~~~dv-kal~~GAdgV~  234 (240)
T 1pii_A          197 RTRELAPKLGHNVTVISESGINTYAQV-RELSHFANGFL  234 (240)
T ss_dssp             HHHHHHHHHCTTSEEEEESCCCCHHHH-HHHTTTCSEEE
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHHH-HHHHCCCCEEE
T ss_conf             999986007878779983699999999-99980799999


No 104
>>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation,complex (rubisco/reaction intermediate), high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} (A:158-308,A:380-493)
Probab=23.18  E-value=40  Score=13.80  Aligned_cols=74  Identities=18%  Similarity=0.047  Sum_probs=33.9

Q ss_pred             ECHHHHHHHHH--HC-CCCEEEEEHHHC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH
Q ss_conf             12999999987--32-897799601213---32211-5899999998899999998851358886055402344436689
Q gi|254780178|r  126 VSPEESVHIQN--LL-GSDIQMQLDECL---ALPAE-DKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLR  198 (378)
Q Consensus       126 ltpe~~i~~q~--~l-g~DI~~~LD~~~---~~~~~-~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR  198 (378)
                      ++|+++-+...  .+ |-|++  =||-.   ++.++ ++|+...++--.+..++.      -+....+.-|.++...+++
T Consensus        32 Ls~~~~a~~~ye~~~GGiDfI--KDDE~l~~qpf~p~~eRv~~v~eai~kA~~ET------Ge~K~~y~NiTa~~~eeM~  103 (265)
T 1bwv_A           32 LSGKNYGRVVYEALKGGLDFV--XDDENINSQPFMRWRERYLFTMEAVNKASAAT------GEVKGHYLNVTAATMEEMY  103 (265)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEE--ECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHH------TSCCEEEEECCCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH------CCEEEEEECCCCCCHHHHH
T ss_conf             898999999999971676053--16755578777869999999999999999986------9823898406886499999


Q ss_pred             HHHHHHHHHH
Q ss_conf             9998876422
Q gi|254780178|r  199 SFSAERLKEL  208 (378)
Q Consensus       199 ~~Sa~~l~~~  208 (378)
                      ++ ++...+.
T Consensus       104 rr-ae~a~e~  112 (265)
T 1bwv_A          104 AR-ANFAKEL  112 (265)
T ss_dssp             HH-HHHHHHT
T ss_pred             HH-HHHHHHC
T ss_conf             99-9999975


No 105
>>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} (A:780-1191)
Probab=23.02  E-value=45  Score=13.50  Aligned_cols=71  Identities=23%  Similarity=0.187  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCC---CHH-------HHHHHHHHHHHCCCH-----HHHEEC-CCCHHHHHHHHHHHCCCC
Q ss_conf             9887642223467664135675---167-------899899989850770-----331002-541018999999853898
Q gi|254780178|r  201 SAERLKELDLKGYAIGGLAVGE---PQE-------VMLHILSNVLPILPV-----ERPHYL-MGVGTPDDILKSVSYGVD  264 (378)
Q Consensus       201 Sa~~l~~~~~~G~aIgGl~~ge---~~~-------~~~~ii~~~~~~LP~-----~kPr~l-~G~G~P~~i~~~v~~GvD  264 (378)
                      -++.+.+.++|++.++|..-+.   ...       -....+..+.+.+.+     .-|... =|+.++.+|+.++++|.|
T Consensus       230 ~a~~~~~~G~D~Iiv~g~ggg~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~i~viadGGI~~g~di~kALalGAd  309 (412)
T 1ea0_A          230 IAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAE  309 (412)
T ss_dssp             HHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCS
T ss_pred             HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             99776636799999808998554171778753885489999999999997699761499953896889999999985877


Q ss_pred             EEEECCE
Q ss_conf             3662000
Q gi|254780178|r  265 MFDCVMP  271 (378)
Q Consensus       265 lFD~~~p  271 (378)
                      -.=..-|
T Consensus       310 ~V~iG~~  316 (412)
T 1ea0_A          310 EFGIGTA  316 (412)
T ss_dssp             EEECCHH
T ss_pred             HHHHHHH
T ss_conf             0517799


No 106
>>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} (A:)
Probab=21.66  E-value=47  Score=13.32  Aligned_cols=138  Identities=12%  Similarity=0.051  Sum_probs=67.2

Q ss_pred             CCCCCHHHH-------HHCCCCEEEEEHHHHHHCCCHHHHHH------CC-CCHHHCCCCCCEEECCCCCCCCHHHHCCC
Q ss_conf             688688999-------86099899932266573876899865------27-42011015772241145432101221022
Q gi|254780178|r   42 VKAMYFDQV-------RDLGADVILGNAYHLMLRPGAERIAR------LG-GLHKFIRWFKPILTDSGGFQVMSLSKLCS  107 (378)
Q Consensus        42 v~~lt~~~l-------~~~g~~~il~Ntyhl~~~pg~~~i~~------~g-Glh~fl~~~~~ilTDSGgfQv~sl~~~~~  107 (378)
                      ....+++.+       .+.|++++=.|.  -.-+|+.+.+..      .. -+...-..+-||.-||---++...+    
T Consensus        23 ~~~~~~~~~~~~a~~~~~~GA~iIDIg~--~st~p~~~~i~~eee~~rl~~~v~~i~~~~~piSiDT~~~~v~~~a----   96 (280)
T 1eye_A           23 GCYLDLDDAVKHGLAMAAAGAGIVDVGG--ESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAA----   96 (280)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCSEEEEEC--C--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHH----
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH----
T ss_conf             8778999999999999988997899799--8789989868979999999999999986898089979869999999----


Q ss_pred             CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC
Q ss_conf             33331021014454158712999999987328977996012133--22115899999998899999998851---35888
Q gi|254780178|r  108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLA--LPAEDKELKRAMELSLRWAERSLVAF---GNQPG  182 (378)
Q Consensus       108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~--~~~~~k~~~~sv~rT~~w~~~~~~~~---~~~~~  182 (378)
                       -+.|+..-+.++|..   ...+..++...-+..+++...+-.+  .....++.+..++.-.+|+++.++..   .-...
T Consensus        97 -l~~G~~iINdisg~~---~~~~~~~l~~~~~~~vV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~  172 (280)
T 1eye_A           97 -LQNGAQMVNDVSGGR---ADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPA  172 (280)
T ss_dssp             -HHTTCCEEEETTTTS---SCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred             -HHCCCCEEEECCCCC---CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             -983998999888777---7611999999719989998279997555777765441999999999999999998699830


Q ss_pred             CEEEEEC
Q ss_conf             6055402
Q gi|254780178|r  183 KALFGIV  189 (378)
Q Consensus       183 ~~lfgiV  189 (378)
                      +.+|=|.
T Consensus       173 ~iiiDPg  179 (280)
T 1eye_A          173 RLVLDPG  179 (280)
T ss_dssp             GEEEECC
T ss_pred             HEEEECC
T ss_conf             2899489


No 107
>>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} (A:)
Probab=21.29  E-value=48  Score=13.27  Aligned_cols=20  Identities=5%  Similarity=-0.001  Sum_probs=10.2

Q ss_pred             ECHHHHHHHHHHCCCCEEEE
Q ss_conf             12999999987328977996
Q gi|254780178|r  126 VSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus       126 ltpe~~i~~q~~lg~DI~~~  145 (378)
                      +|-|-+.+..+.+|.+.++.
T Consensus        68 ~TGeiS~~mLkd~g~~~vii   87 (244)
T 2v5b_A           68 AGNADALASLKDYGISWVVL   87 (244)
T ss_dssp             CCCHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHH
T ss_conf             43215688898765224322


No 108
>>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A* (A:1-52,A:311-456)
Probab=21.12  E-value=39  Score=13.87  Aligned_cols=41  Identities=22%  Similarity=0.404  Sum_probs=25.1

Q ss_pred             CEEECCCCCCCCH--------HHHCCCCCCCCEEEECCCCCCEEEECHHHH
Q ss_conf             2241145432101--------221022333310210144541587129999
Q gi|254780178|r   89 PILTDSGGFQVMS--------LSKLCSIDEQGVRFRSHIDGSLYRVSPEES  131 (378)
Q Consensus        89 ~ilTDSGgfQv~s--------l~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~  131 (378)
                      .+|||||-+.-.+        |+.  +..+.||-...+.+|--+++.....
T Consensus        46 DlLTDSGd~~yl~~Ri~qv~yLg~--~L~~aGVPiv~P~GGHav~iDA~~f   94 (198)
T 2ez2_A           46 DLLTDSGQYEYIEHRVKQVRYLGD--KLKAAGVPIVEPVGGHAVFLDARRF   94 (198)
T ss_dssp             ECSCSSSCHHHHHHHHHHHHHHHH--HHHHTTCCBCSSCCSSEEEEEHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             761478867999999999999999--9986588765678864221204654


No 109
>>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} (A:)
Probab=21.04  E-value=49  Score=13.24  Aligned_cols=35  Identities=11%  Similarity=-0.062  Sum_probs=28.3

Q ss_pred             HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf             98507703310025410189999998538983662
Q gi|254780178|r  234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~  268 (378)
                      ....-....|...-|.-+|.++..+.+.|+|.+=.
T Consensus       163 ~~~~~~~~~~v~~~GGi~~~d~~~~~~~Gadgv~v  197 (220)
T 2fli_A          163 WRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA  197 (220)
T ss_dssp             HHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEE
T ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             88750996389986867988999999879999997


No 110
>>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Zea mays} (A:344-376,A:518-876)
Probab=20.97  E-value=49  Score=13.23  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             HHHEECCC--CHHHHHHHHHHHCCCCEEEEC
Q ss_conf             33100254--101899999985389836620
Q gi|254780178|r  241 ERPHYLMG--VGTPDDILKSVSYGVDMFDCV  269 (378)
Q Consensus       241 ~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~  269 (378)
                      ++|..+.|  +|+|..+..++.+|||-|=|+
T Consensus       346 ~i~v~vCGe~a~dp~~i~~L~~lGi~~lSvs  376 (392)
T 1vbg_A          346 NLKVGICGEHGGEPSSVAFFAKAGLDYVSCS  376 (392)
T ss_dssp             TCEEEEESGGGGSHHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf             9879982764569999999998799989988


No 111
>>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:)
Probab=20.89  E-value=49  Score=13.22  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=7.3

Q ss_pred             CCCHHHHHHCCCCEEEE
Q ss_conf             86889998609989993
Q gi|254780178|r   44 AMYFDQVRDLGADVILG   60 (378)
Q Consensus        44 ~lt~~~l~~~g~~~il~   60 (378)
                      .+++++|+++|++-++.
T Consensus        79 eiS~~mL~d~G~~~vli   95 (256)
T 1aw2_A           79 DMSPAMLKEFGATHIII   95 (256)
T ss_dssp             CCCHHHHHHHTCCEEEE
T ss_pred             CCCHHHHHHHHCCEEEE
T ss_conf             01399886430231443


No 112
>>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} (A:1-71,A:296-426)
Probab=20.83  E-value=49  Score=13.21  Aligned_cols=33  Identities=27%  Similarity=0.517  Sum_probs=21.6

Q ss_pred             EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             0121332211589999999889999999885135
Q gi|254780178|r  146 LDECLALPAEDKELKRAMELSLRWAERSLVAFGN  179 (378)
Q Consensus       146 LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~  179 (378)
                      |++.++.++-.= .+.+++..++|+.+....+.-
T Consensus        40 ~~~~~~lp~av~-~~~~l~~n~~wmq~~~~~~~f   72 (202)
T 3gwq_A           40 LNEDVSLPAAVL-YADRVEHNLKWXQAFVAEYGF   72 (202)
T ss_dssp             GGTCBCSSEEEE-EHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCEEEE-CHHHHHHHHHHHHHHHHHCCC
T ss_conf             443579963998-299999999999997744690


No 113
>>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:149-309)
Probab=20.81  E-value=38  Score=13.97  Aligned_cols=20  Identities=40%  Similarity=0.627  Sum_probs=14.1

Q ss_pred             CCCEEECCCC-CCCCHHHHCC
Q ss_conf             7722411454-3210122102
Q gi|254780178|r   87 FKPILTDSGG-FQVMSLSKLC  106 (378)
Q Consensus        87 ~~~ilTDSGg-fQv~sl~~~~  106 (378)
                      ...+||.||| |.-+++..+.
T Consensus        39 ~kiiLTASGGpFr~~~~~~l~   59 (161)
T 1q0q_A           39 VSILLTGSGGPFRETPLRDLA   59 (161)
T ss_dssp             EEEEEEECCCTTTTSCGGGGG
T ss_pred             EEEEEECCCCCHHCCCHHHHH
T ss_conf             279995467504207677774


No 114
>>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} (A:112-235)
Probab=20.75  E-value=36  Score=14.10  Aligned_cols=29  Identities=7%  Similarity=0.227  Sum_probs=23.4

Q ss_pred             CCCCCEEEECHHHHHHHHHHCCCCEEEEEH
Q ss_conf             445415871299999998732897799601
Q gi|254780178|r  118 HIDGSLYRVSPEESVHIQNLLGSDIQMQLD  147 (378)
Q Consensus       118 ~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD  147 (378)
                      +++|. ..++|++.+++.+.++|.++++.-
T Consensus        70 pigg~-~~~~~~~a~~~~~~l~~k~viP~H   98 (124)
T 3kl7_A           70 PVNQP-YTXTVSQAAKAARXFSPKILYPYH   98 (124)
T ss_dssp             ECCTT-TSCCHHHHHHHHHHHCCSEEEEES
T ss_pred             CCCCC-CCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf             99997-767999999999972999999946


No 115
>>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (A:)
Probab=20.66  E-value=50  Score=13.19  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=26.1

Q ss_pred             HHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE
Q ss_conf             9899989850770331002-541018999999853898366
Q gi|254780178|r  228 LHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD  267 (378)
Q Consensus       228 ~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD  267 (378)
                      .+.+..+..  -.+.|... -|+++|.++..+.++|.|.+-
T Consensus       194 ~~~v~~~~~--~~~ipii~~GGI~t~~dv~~a~~~GAd~V~  232 (268)
T 1qop_A          194 HHLIEKLKE--YHAAPALQGFGISSPEQVSAAVRAGAAGAI  232 (268)
T ss_dssp             HHHHHHHHH--TTCCCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             999999987--378974898325989999999863899999


No 116
>>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:475-637)
Probab=20.65  E-value=49  Score=13.24  Aligned_cols=32  Identities=13%  Similarity=0.111  Sum_probs=24.9

Q ss_pred             CCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE
Q ss_conf             14543210122102233331021014454158712999999987328977996
Q gi|254780178|r   93 DSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ  145 (378)
Q Consensus        93 DSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~  145 (378)
                      -++||.+..++                     .-+|++.++....-++|++..
T Consensus        61 ~~~G~~v~~lg---------------------~~~p~~~~~a~~~~~~d~i~l   92 (163)
T 1req_B           61 HIAGIDTPQVE---------------------GGTTAEIVEAFKKSGAQVADL   92 (163)
T ss_dssp             HHTTCBCCEEE---------------------CCCHHHHHHHHHHHTCSEEEE
T ss_pred             HHCCCCCCCCC---------------------CCCHHHHHHHHHHCCCCEEEE
T ss_conf             84484203588---------------------899899999998659988999


No 117
>>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A (A:)
Probab=20.47  E-value=50  Score=13.16  Aligned_cols=20  Identities=15%  Similarity=0.142  Sum_probs=10.3

Q ss_pred             CHHHHHHHHHHHCCCCEEEE
Q ss_conf             10189999998538983662
Q gi|254780178|r  249 VGTPDDILKSVSYGVDMFDC  268 (378)
Q Consensus       249 ~G~P~~i~~~v~~GvDlFD~  268 (378)
                      .|.-..++.+..+|.|-+-+
T Consensus       176 ~g~~~~~~~~l~~G~~G~i~  195 (286)
T 2r91_A          176 NGSDSLVFASFAVRLDGVVA  195 (286)
T ss_dssp             ECCGGGHHHHHHTTCSEECC
T ss_pred             CCCCCCCCHHHHHCCCEEEE
T ss_conf             88642223667640550031


No 118
>>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* (B:)
Probab=20.32  E-value=50  Score=13.14  Aligned_cols=142  Identities=13%  Similarity=0.038  Sum_probs=78.6

Q ss_pred             EEECHHHHHHHHHHC----------CCCEEEE------E-HHHCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             871299999998732----------8977996------0-121332211-5-8999999988999999988513588860
Q gi|254780178|r  124 YRVSPEESVHIQNLL----------GSDIQMQ------L-DECLALPAE-D-KELKRAMELSLRWAERSLVAFGNQPGKA  184 (378)
Q Consensus       124 ~~ltpe~~i~~q~~l----------g~DI~~~------L-D~~~~~~~~-~-k~~~~sv~rT~~w~~~~~~~~~~~~~~~  184 (378)
                      ..+|-+++-++++.+          |-|.+..      | +....+... + ++---|++.=.|++.+.+++-.+.-...
T Consensus       159 ~~lt~~eI~~ii~~f~~AA~~A~~AGfDgVEIh~ahGyLl~QFlSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aIR~~vg~~  238 (402)
T 2hsa_B          159 RAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD  238 (402)
T ss_dssp             EECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCC
T ss_conf             76899999999999999999998549527882003110688887754445664333100143124689987544244057


Q ss_pred             E----------------EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCC--------CCHHHHHHHHHHHHHCC
Q ss_conf             5----------------54023444366899998876422234676641--3567--------51678998999898507
Q gi|254780178|r  185 L----------------FGIVQGGDNINLRSFSAERLKELDLKGYAIGG--LAVG--------EPQEVMLHILSNVLPIL  238 (378)
Q Consensus       185 l----------------fgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG--l~~g--------e~~~~~~~ii~~~~~~L  238 (378)
                      .                ...+.||...|.-.+-++.+.+.++|.+-+..  ....        .+..........+..  
T Consensus       239 ~i~~~~~~~~~~~~~~~~~~~~~G~~~ee~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  316 (402)
T 2hsa_B          239 RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRN--  316 (402)
T ss_dssp             GEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHH--
T ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH--
T ss_conf             622055124313456656417888889999878887403665418852565555566556646762112799999998--


Q ss_pred             CHHHHEECCCCHHHHHHHHHHHCC-CCEEE
Q ss_conf             703310025410189999998538-98366
Q gi|254780178|r  239 PVERPHYLMGVGTPDDILKSVSYG-VDMFD  267 (378)
Q Consensus       239 P~~kPr~l~G~G~P~~i~~~v~~G-vDlFD  267 (378)
                      -...|...-|..+|.+...+++.| +|+.=
T Consensus       317 ~~~~pv~~~g~~~~~~a~~~l~~g~~D~v~  346 (402)
T 2hsa_B          317 AYQGTFICSGGYTRELGIEAVAQGDADLVS  346 (402)
T ss_dssp             HCSSCEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             HCCCCEEEECCCCHHHHHHHHHCCCCCEEE
T ss_conf             548988985898989999999869962731


No 119
>>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, cytoplasm, hydrolase, manganese; 1.85A {Escherichia coli K12} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A* (A:116-275)
Probab=20.15  E-value=47  Score=13.36  Aligned_cols=111  Identities=17%  Similarity=0.217  Sum_probs=52.7

Q ss_pred             CCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             97799601213322115899999998899999998851358886055402344436689999887642223467664135
Q gi|254780178|r  140 SDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA  219 (378)
Q Consensus       140 ~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~  219 (378)
                      ||++|-==...|...+.-.+..+++.+++...+++..   .-. -|--+|   +++.-.+.-++++.+.+..-..|   +
T Consensus         3 Pd~YM~Kiavgp~~~g~Idl~~p~~~Nl~~vA~algk---~v~-dltV~v---LdRpRH~~lI~eiR~~Gari~Li---~   72 (160)
T 3big_A            3 PDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGK---PLS-ELTVTI---LAKPRHDAVIAEMQQLGVRVFAI---P   72 (160)
T ss_dssp             CSSEEEEEEECGGGTTCCCTTSCHHHHHHHHHHHHTS---CGG-GCEEEE---ECSGGGHHHHHHHHHHTCEEEEE---S
T ss_pred             HHHHEEEEEECCCCCCEECCCCCHHHHHHHHHHHCCC---CHH-HCEEEE---EECCHHHHHHHHHHHCCCEEEEC---C
T ss_conf             4762123464687788533899989999999998099---965-838999---85645799999999759918971---6


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHEECCCC-HHHHHHHHHHH---CCCCEEE
Q ss_conf             675167899899989850770331002541-01899999985---3898366
Q gi|254780178|r  220 VGEPQEVMLHILSNVLPILPVERPHYLMGV-GTPDDILKSVS---YGVDMFD  267 (378)
Q Consensus       220 ~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~-G~P~~i~~~v~---~GvDlFD  267 (378)
                      -|       ++-..+...+|...--.+||+ |.|+-++.|.+   +|=+|.=
T Consensus        73 DG-------DVa~ai~~~~~~sgvD~~~GiGGaPEGVlaAaAlkclGG~mqg  117 (160)
T 3big_A           73 DG-------DVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNG  117 (160)
T ss_dssp             SC-------SHHHHHHTTCTTSSCCEEEEEEEHHHHHHHHHHHHHHTCEEEE
T ss_pred             CC-------CHHHEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             76-------7678112136776326998638781899999999866981589


Done!