Query gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 378 No_of_seqs 151 out of 1891 Neff 6.3 Searched_HMMs 33803 Date Mon May 23 10:29:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780178.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bld_A Queuine tRNA-ribosyltr 100.0 0 0 795.1 32.6 371 2-372 11-385 (386) 2 >2ash_A Queuine tRNA-ribosyltr 100.0 0 0 795.6 32.0 339 2-374 10-348 (349) 3 >1iq8_A Archaeosine tRNA-guani 100.0 0 0 672.3 22.1 335 1-370 4-341 (358) 4 >2ash_A Queuine tRNA-ribosyltr 98.2 4E-07 1.2E-11 67.5 1.5 32 95-127 1-32 (32) 5 >1rqb_A Transcarboxylase 5S su 92.9 0.71 2.1E-05 25.6 8.1 141 129-282 120-265 (359) 6 >2ztj_A Homocitrate synthase; 91.3 1.1 3.2E-05 24.3 10.6 148 129-282 77-234 (277) 7 >1nvm_A HOA, 4-hydroxy-2-oxova 90.2 1.4 4E-05 23.7 7.0 96 187-282 140-239 (273) 8 >3bg3_A Pyruvate carboxylase, 87.9 2 5.8E-05 22.6 6.7 89 191-281 191-284 (398) 9 >2ojp_A DHDPS, dihydrodipicoli 87.7 0.79 2.3E-05 25.3 4.2 27 243-269 179-205 (292) 10 >3ewb_X 2-isopropylmalate synt 87.3 2.1 6.2E-05 22.4 9.9 150 129-283 83-243 (293) 11 >1xky_A Dihydrodipicolinate sy 86.6 1.5 4.4E-05 23.4 5.1 20 249-268 196-215 (219) 12 >3ler_A DHDPS, dihydrodipicoli 85.9 2.3 6.8E-05 22.2 5.8 99 129-236 31-131 (301) 13 >3b4u_A Dihydrodipicolinate sy 84.6 2.9 8.5E-05 21.5 6.1 29 242-270 185-213 (228) 14 >2rfg_A Dihydrodipicolinate sy 84.0 1.7 5E-05 23.0 4.4 124 128-261 23-153 (243) 15 >3d0c_A Dihydrodipicolinate sy 83.7 3.1 9.2E-05 21.3 5.9 18 129-146 36-53 (217) 16 >1xxx_A DHDPS, dihydrodipicoli 83.2 2.4 7.2E-05 22.0 4.9 18 129-146 38-55 (219) 17 >2ehh_A DHDPS, dihydrodipicoli 82.2 2.6 7.7E-05 21.8 4.8 17 130-146 25-41 (294) 18 >3eeg_A 2-isopropylmalate synt 82.2 3.6 0.00011 20.9 7.5 152 129-281 84-242 (325) 19 >1sr9_A 2-isopropylmalate synt 81.8 2.4 7.1E-05 22.0 4.5 81 202-282 238-324 (370) 20 >2yxg_A DHDPS, dihydrodipicoli 81.2 2.9 8.5E-05 21.5 4.7 101 129-239 24-126 (289) 21 >3dz1_A Dihydrodipicolinate sy 79.3 4.4 0.00013 20.2 5.8 120 129-259 32-159 (313) 22 >1o5k_A DHDPS, dihydrodipicoli 79.1 4.5 0.00013 20.2 5.4 22 246-267 197-218 (306) 23 >2vc6_A MOSA, dihydrodipicolin 78.6 4.6 0.00014 20.1 5.8 19 129-147 24-42 (236) 24 >2nx9_A Oxaloacetate decarboxy 78.1 4.8 0.00014 20.0 8.3 140 129-282 103-246 (353) 25 >1gte_A Dihydropyrimidine dehy 76.4 5.3 0.00016 19.7 7.6 133 126-268 123-274 (280) 26 >3flu_A DHDPS, dihydrodipicoli 75.9 5.5 0.00016 19.6 6.1 18 129-146 31-48 (297) 27 >3g1v_A Orotidine 5'-phosphate 75.9 4.9 0.00015 19.9 4.6 122 126-269 78-202 (228) 28 >3bi8_A Dihydrodipicolinate sy 74.8 5.9 0.00017 19.4 5.6 22 248-269 184-205 (291) 29 >2r8w_A AGR_C_1641P; APC7498, 74.2 6.1 0.00018 19.3 5.5 102 128-239 57-160 (280) 30 >3cpr_A Dihydrodipicolinate sy 73.7 6.2 0.00018 19.3 4.7 28 190-217 31-58 (221) 31 >3daq_A DHDPS, dihydrodipicoli 70.2 7.4 0.00022 18.7 4.9 19 250-268 188-206 (229) 32 >3hbl_A Pyruvate carboxylase; 69.8 7.6 0.00022 18.7 11.3 144 129-281 136-285 (389) 33 >3bmx_A Uncharacterized lipopr 69.6 7.7 0.00023 18.6 6.0 21 255-275 255-275 (419) 34 >3fkr_A L-2-keto-3-deoxyarabon 68.7 8 0.00024 18.5 6.1 124 128-261 31-164 (309) 35 >3e96_A Dihydrodipicolinate sy 67.8 8.3 0.00025 18.4 5.8 15 254-268 199-213 (217) 36 >3ivs_A Homocitrate synthase, 67.7 8.4 0.00025 18.4 11.6 146 127-280 111-266 (311) 37 >3h5d_A DHDPS, dihydrodipicoli 65.7 9.1 0.00027 18.1 4.9 25 244-268 186-210 (214) 38 >2nli_A Lactate oxidase; flavo 63.8 8 0.00024 18.5 3.5 77 199-275 240-319 (368) 39 >2v9d_A YAGE; dihydrodipicolin 61.3 11 0.00032 17.6 4.8 101 129-239 55-157 (278) 40 >1x38_A Beta-D-glucan exohydro 60.2 11 0.00034 17.5 4.7 23 255-277 238-260 (365) 41 >1yxy_A Putative N-acetylmanno 60.2 1.8 5.4E-05 22.8 -0.3 61 202-266 146-212 (218) 42 >1tb3_A Hydroxyacid oxidase 3; 59.6 6.5 0.00019 19.1 2.4 75 201-275 230-307 (352) 43 >3ble_A Citramalate synthase f 59.4 12 0.00035 17.4 8.3 147 126-281 96-257 (337) 44 >2h6r_A Triosephosphate isomer 58.4 9.8 0.00029 17.9 3.1 125 125-267 68-197 (219) 45 >2nuw_A 2-keto-3-deoxygluconat 58.2 12 0.00036 17.3 6.2 15 254-268 180-194 (288) 46 >2htm_A Thiazole biosynthesis 57.9 12 0.00037 17.2 6.8 124 129-267 80-205 (268) 47 >2qf7_A Pyruvate carboxylase p 55.9 13 0.0004 17.0 6.6 90 191-281 192-284 (388) 48 >2wkj_A N-acetylneuraminate ly 55.7 14 0.0004 17.0 5.9 79 129-217 35-114 (218) 49 >1d3g_A Dihydroorotate dehydro 53.9 14 0.00043 16.8 10.6 135 133-267 170-325 (367) 50 >2dp3_A Triosephosphate isomer 53.8 14 0.00043 16.8 3.5 172 34-234 68-252 (257) 51 >1me8_A Inosine-5'-monophospha 53.6 10 0.00031 17.7 2.6 73 202-275 298-387 (503) 52 >1qwg_A PSL synthase;, (2R)-ph 52.9 15 0.00044 16.7 6.9 126 127-265 86-222 (251) 53 >3eb2_A Putative dihydrodipico 52.8 15 0.00044 16.7 5.9 18 129-146 28-45 (245) 54 >1f6k_A N-acetylneuraminate ly 52.6 15 0.00045 16.7 5.4 79 129-217 27-107 (293) 55 >3dfg_A Xcrecx, regulatory pro 50.1 12 0.00037 17.2 2.6 31 186-217 15-45 (53) 56 >1a53_A IGPS, indole-3-glycero 49.1 17 0.00051 16.3 10.4 118 126-267 88-206 (223) 57 >1ub3_A Aldolase protein; schi 47.8 18 0.00053 16.2 8.1 128 129-269 74-205 (220) 58 >1kbi_A Cytochrome B2, L-LCR; 47.3 18 0.00054 16.1 3.2 77 199-275 260-344 (392) 59 >2z6i_A Trans-2-enoyl-ACP redu 46.7 15 0.00046 16.6 2.6 75 200-276 121-198 (246) 60 >1ydn_A Hydroxymethylglutaryl- 46.3 19 0.00056 16.0 10.4 147 126-276 79-238 (295) 61 >3i65_A Dihydroorotate dehydro 45.3 20 0.00058 15.9 6.0 142 126-268 143-318 (360) 62 >1ydo_A HMG-COA lyase; TIM-bar 45.2 20 0.00058 15.9 9.4 148 127-279 82-243 (307) 63 >1o0y_A Deoxyribose-phosphate 44.3 20 0.0006 15.8 9.7 127 130-267 115-243 (260) 64 >1f76_A Dihydroorotate dehydro 43.9 20 0.0006 15.8 12.8 137 135-271 161-320 (336) 65 >2btm_A TIM, protein (trioseph 43.8 21 0.00061 15.8 4.5 77 149-233 172-248 (252) 66 >1req_A Methylmalonyl-COA muta 43.5 20 0.0006 15.8 2.8 21 125-145 69-89 (163) 67 >3igs_A N-acetylmannosamine-6- 41.6 6.7 0.0002 19.0 0.1 26 241-266 181-207 (213) 68 >3bo9_A Putative nitroalkan di 40.8 23 0.00067 15.5 3.4 77 200-278 135-214 (248) 69 >1yya_A Triosephosphate isomer 40.3 23 0.00069 15.4 5.3 77 150-234 173-249 (250) 70 >1b9b_A TIM, protein (trioseph 40.2 17 0.00049 16.4 2.0 78 150-236 175-252 (255) 71 >3f94_A Beta-glucosidase; (alp 39.5 24 0.00071 15.3 5.0 23 254-276 246-268 (397) 72 >1w3i_A EDA, 2-keto-3-deoxy gl 39.3 24 0.00071 15.3 6.1 19 250-268 178-196 (293) 73 >2i8d_A Uncharacterized conser 39.2 12 0.00036 17.3 1.1 26 73-98 28-53 (68) 74 >3gvg_A Triosephosphate isomer 38.7 25 0.00072 15.3 4.8 20 126-145 101-120 (283) 75 >2hl7_A Cytochrome C-type biog 38.3 20 0.00059 15.8 2.1 48 304-369 26-73 (84) 76 >2cu0_A Inosine-5'-monophospha 35.9 27 0.0008 15.0 4.7 125 126-271 212-344 (471) 77 >1gc5_A ADP-dependent glucokin 35.5 22 0.00066 15.5 2.0 87 113-208 73-168 (336) 78 >1mo0_A TIM, triosephosphate i 35.4 22 0.00064 15.6 1.9 38 191-234 229-266 (275) 79 >1xfc_A Alanine racemase; alph 34.8 28 0.00083 14.8 3.9 23 126-148 50-72 (222) 80 >1l2l_A ADP-dependent glucokin 34.3 8.9 0.00026 18.2 -0.2 65 135-208 94-159 (327) 81 >2gou_A Oxidoreductase, FMN-bi 34.2 29 0.00085 14.8 4.3 71 190-266 199-277 (323) 82 >2jbm_A Nicotinate-nucleotide 33.3 29 0.00086 14.7 2.3 63 202-269 47-109 (113) 83 >2i9e_A Triosephosphate isomer 33.2 18 0.00052 16.2 1.2 66 150-221 171-236 (259) 84 >1n7k_A Deoxyribose-phosphate 32.9 30 0.00089 14.6 8.0 76 189-267 141-219 (234) 85 >1m6j_A TIM, TPI, triosephosph 31.6 32 0.00093 14.5 3.1 19 43-61 83-101 (261) 86 >1h2e_A Phosphatase, YHFR; hyd 29.7 34 0.001 14.3 3.2 83 184-267 83-168 (207) 87 >2hmc_A AGR_L_411P, dihydrodip 29.1 35 0.001 14.2 3.8 32 238-269 200-232 (235) 88 >3fem_A Pyridoxine biosynthesi 27.4 37 0.0011 14.1 2.0 29 239-267 204-233 (297) 89 >1ynp_A Oxidoreductase, AKR11C 27.2 37 0.0011 14.0 2.8 16 155-170 113-128 (317) 90 >1tqj_A Ribulose-phosphate 3-e 25.9 39 0.0012 13.9 3.1 33 237-269 169-201 (230) 91 >1vd6_A Glycerophosphoryl dies 25.8 40 0.0012 13.8 2.1 38 239-276 184-221 (224) 92 >2hwg_A Phosphoenolpyruvate-pr 25.1 38 0.0011 14.0 1.7 214 48-276 25-275 (318) 93 >1vfs_A Alanine racemase; TIM- 25.0 41 0.0012 13.7 4.5 138 126-267 50-210 (223) 94 >1ad1_A DHPS, dihydropteroate 24.8 41 0.0012 13.7 5.5 198 42-268 20-239 (266) 95 >1geq_A Tryptophan synthase al 24.7 41 0.0012 13.7 3.8 64 202-267 149-218 (248) 96 >3l12_A Putative glycerophosph 24.7 42 0.0012 13.7 1.9 37 239-275 209-245 (256) 97 >1wa3_A 2-keto-3-deoxy-6-phosp 24.5 42 0.0012 13.7 4.0 29 239-267 148-176 (205) 98 >3co8_A Alanine racemase; prot 24.3 42 0.0013 13.7 4.1 74 192-267 125-207 (220) 99 >2zbt_A Pyridoxal biosynthesis 24.0 43 0.0013 13.6 4.3 37 232-268 200-237 (297) 100 >2j27_A Triosephosphate isomer 24.0 43 0.0013 13.6 2.9 77 148-233 172-248 (250) 101 >1tv5_A Dhodehase, dihydroorot 23.7 43 0.0013 13.6 5.4 79 189-267 251-347 (390) 102 >2dy3_A Alanine racemase; alph 23.5 44 0.0013 13.6 3.8 78 188-267 118-205 (216) 103 >1pii_A N-(5'phosphoribosyl)an 23.4 29 0.00086 14.7 0.9 37 230-267 197-234 (240) 104 >1bwv_A Rubisco, protein (ribu 23.2 40 0.0012 13.8 1.5 74 126-208 32-112 (265) 105 >1ea0_A Glutamate synthase [NA 23.0 45 0.0013 13.5 4.7 71 201-271 230-316 (412) 106 >1eye_A DHPS 1, dihydropteroat 21.7 47 0.0014 13.3 4.1 138 42-189 23-179 (280) 107 >2v5b_A Triosephosphate isomer 21.3 48 0.0014 13.3 4.0 20 126-145 68-87 (244) 108 >2ez2_A Beta-tyrosinase, tyros 21.1 39 0.0012 13.9 1.2 41 89-131 46-94 (198) 109 >2fli_A Ribulose-phosphate 3-e 21.0 49 0.0014 13.2 2.6 35 234-268 163-197 (220) 110 >1vbg_A Pyruvate,orthophosphat 21.0 49 0.0014 13.2 3.1 29 241-269 346-376 (392) 111 >1aw2_A Triosephosphate isomer 20.9 49 0.0015 13.2 2.4 17 44-60 79-95 (256) 112 >3gwq_A D-serine deaminase; YP 20.8 49 0.0015 13.2 2.2 33 146-179 40-72 (202) 113 >1q0q_A 1-deoxy-D-xylulose 5-p 20.8 38 0.0011 14.0 1.0 20 87-106 39-59 (161) 114 >3kl7_A Putative metal-depende 20.8 36 0.0011 14.1 0.9 29 118-147 70-98 (124) 115 >1qop_A Tryptophan synthase al 20.7 50 0.0015 13.2 2.4 38 228-267 194-232 (268) 116 >1req_B Methylmalonyl-COA muta 20.6 49 0.0014 13.2 1.6 32 93-145 61-92 (163) 117 >2r91_A 2-keto-3-deoxy-(6-phos 20.5 50 0.0015 13.2 5.4 20 249-268 176-195 (286) 118 >2hsa_B 12-oxophytodienoate re 20.3 50 0.0015 13.1 4.3 142 124-267 159-346 (402) 119 >3big_A Fructose-1,6-bisphosph 20.1 47 0.0014 13.4 1.4 111 140-267 3-117 (160) No 1 >>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing, zinc; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... (A:) Probab=100.00 E-value=0 Score=795.06 Aligned_cols=371 Identities=55% Similarity=0.920 Sum_probs=363.0 Q ss_pred CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH Q ss_conf 88704999976499327999878875405857410686856886889998609989993226657387689986527420 Q gi|254780178|r 2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81 (378) Q Consensus 2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh 81 (378) ...|+|++++++++||+|+|.++||+|+||+||||+++|+|||||||++++++.+++++|+||++++|+.+.+++.||+| T Consensus 11 ~m~~~f~i~~~~~~aR~G~l~~~~~~i~TP~fl~vt~~G~vp~Lt~d~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 90 (386) T 3bld_A 11 RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH 90 (386) T ss_dssp CCSCEEEEEEEETTEEEEEEEETTEEEEESEECCEESSSSBTTCCHHHHHHTTCSCEEECHHHHHHTTCHHHHHHTTCHH T ss_pred CCCEEEEEEECCCCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHCCCCEEECHHHHHHHCCCHHHHHHCCCCH T ss_conf 89726999966685225899979977448917634787758857999999728988951166775478707777448820 Q ss_pred HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH Q ss_conf 11015772241145432101221022333310210144541587129999999873289779960121332211589999 Q gi|254780178|r 82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR 161 (378) Q Consensus 82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~ 161 (378) +|++|+++++||||+||++|++...+++++||.|+++.+|+++.+|||+|+++|+.|||||+|+||+++++..++|++++ T Consensus 91 ~f~~~~~~~lt~sg~~q~~~~~~~~~~~~~gv~~~~~~~gg~~~lt~e~~~~~~~~i~pDi~v~Ldd~~~~~~~~k~~~~ 170 (386) T 3bld_A 91 SFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAAS 170 (386) T ss_dssp HHHTCCSCEEECCSHHHHHC------CBTTBCCCCC--------CCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHHHHH T ss_pred HHHCCCCCEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHH T ss_conf 33138876112555555444123566568834883676894165188999999997499888753435788861778999 Q ss_pred HHHHHHHHHHHHHHHHCCCC----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf 99988999999988513588----86055402344436689999887642223467664135675167899899989850 Q gi|254780178|r 162 AMELSLRWAERSLVAFGNQP----GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI 237 (378) Q Consensus 162 sv~rT~~w~~~~~~~~~~~~----~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~ 237 (378) ||+||.+|+++|+++++..+ .+.+||+||||.++|||++|++++.+++++||+|||+.++++.+++.++|.++.+. T Consensus 171 sv~rT~~w~~~~~~~~~~~~~~~~~~~~~~~iqGg~~~dlr~~s~~~l~~~~~~g~~i~g~~~~~~~~~~~~~i~~~~~~ 250 (386) T 3bld_A 171 SMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPM 250 (386) T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHHGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHCCC T ss_conf 99999999999999876122116774051363787789999999999985799877215866676177889998751434 Q ss_pred CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH Q ss_conf 77033100254101899999985389836620000023320024562100210123223688559866981336889899 Q gi|254780178|r 238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY 317 (378) Q Consensus 238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY 317 (378) ||++|||||+|+|+|++|+.+|++|||+|||++|++.||+|+|+|++|.+||++.+|++|++||+++|+||+|++||||| T Consensus 251 lp~~kp~~l~G~g~P~~il~~v~~GvD~fDs~~p~~~A~~G~alt~~~~~~L~~~~~~~d~~Pi~~~C~C~~C~~~traY 330 (386) T 3bld_A 251 LPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAY 330 (386) T ss_dssp SCTTSCEEETTCCCHHHHHHHHTTTCCEEC----------CEECCTTCCEETTSGGGTTCCSCSSSSCCSHHHHHCCHHH T ss_pred CCCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCCHHHHCCCEECCCCCEEECCHHHCCCCCCCCCCCCCHHHCCCCHHH T ss_conf 66553146458998899999998299731146745254278566269854605364435799869799991226259999 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 9886857850899999999999999999999999985998999999999853279 Q gi|254780178|r 318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGD 372 (378) Q Consensus 318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~ 372 (378) ||||++++||+|.+||++||+++|.+||+.||++|++|+|++|+++|+++|..++ T Consensus 331 lhHL~~~~E~~~~~LL~~HNl~~~~~~~~~iR~~i~~~~l~~~~~~~~~~~~~~~ 385 (386) T 3bld_A 331 IHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFARN 385 (386) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC--- T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC T ss_conf 9777547846899999999999999999999999985999999999999960689 No 2 >>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} (A:1-102,A:135-381) Probab=100.00 E-value=0 Score=795.62 Aligned_cols=339 Identities=42% Similarity=0.731 Sum_probs=333.0 Q ss_pred CCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCCH Q ss_conf 88704999976499327999878875405857410686856886889998609989993226657387689986527420 Q gi|254780178|r 2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGLH 81 (378) Q Consensus 2 ~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGlh 81 (378) ++.|+|++++++++||+|.|.|+||.|+||+||||+|.|+||+++|++++++|+|++|+|||||+++||.++++++|||| T Consensus 10 ~~~~~~~~~~~~~~ar~~~~~~~~g~i~tp~f~pv~t~~~~k~~~~~~~~~~~~~~~l~ntyhl~~~p~~~~~~~~ggl~ 89 (349) T 2ash_A 10 HHHMEFEVKKTFGKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHLMLKPGVEIIKLHRGLH 89 (349) T ss_dssp ---CEEEEEEEETTEEEEEEEETTEEEEESEEEEEESSSSCTTCCHHHHHHHTCSCEEECCHHHHHTTCHHHHHHTTSHH T ss_pred CCCEEEEEEEEECCEEEEEEEECCEEEECCEEEECCCCCCCCCCCHHHHHHHCCCEEECCHHHHEECCCHHHHHHHCCCC T ss_conf 55159999852186325899989987619968760577858847999999728988831214440078605668618853 Q ss_pred HHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHH Q ss_conf 11015772241145432101221022333310210144541587129999999873289779960121332211589999 Q gi|254780178|r 82 KFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKR 161 (378) Q Consensus 82 ~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~ 161 (378) +||+|++||||| +||++|++|+.+||||+|+||+++++++++|++++ T Consensus 90 ~f~~~~~~~~td---------------------------------spe~~i~iq~~ig~DI~i~LDd~tp~~~~~k~~~~ 136 (349) T 2ash_A 90 NFMGWKRPILTD---------------------------------SPEISMEVQIALGSDICMVFDHCPVPDADYEEVKE 136 (349) T ss_dssp HHHTCCSCEEEC---------------------------------CHHHHHHHHHHHTCSEEECCCCCCC--CCHHHHHH T ss_pred CHHHHCCCEEEE---------------------------------CHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHH T ss_conf 123405824530---------------------------------35876677750587088613545553210578999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH Q ss_conf 99988999999988513588860554023444366899998876422234676641356751678998999898507703 Q gi|254780178|r 162 AMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE 241 (378) Q Consensus 162 sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~ 241 (378) ||+||++|+++|++++.+. +|++|||||||.+.|||++|++++.+++++||+|||++++++++++.++|.++.+.||++ T Consensus 137 sv~rT~rWl~~~l~~~~~~-~~~lfgiiqGG~~~dLR~~s~~~l~~~~~~g~aigGl~~ge~~~~~~~ii~~~~~~LP~~ 215 (349) T 2ash_A 137 ATERTYRWALRSKKAFKTE-NQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPED 215 (349) T ss_dssp HHHHHHHHHHHHHHHCCCS-SCEEEEEECCTTCHHHHHHHHHHHHTTCCSEEEECSCSSSSCHHHHHHHHHHHHTTSCTT T ss_pred HHHHHHHHHHHHHHHCCCC-CCEEECEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 8888888866303330477-732765289974254688999998721567055440224433210455543422213433 Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHHHH Q ss_conf 31002541018999999853898366200000233200245621002101232236885598669813368898999886 Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAYLHHL 321 (378) Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraYl~HL 321 (378) ||||++|+|+|++|+.+|++|||+|||++|+|.||+|.|||++|++||++.+|++|++||+++|+||||++||||||||| T Consensus 216 kpr~l~G~g~P~~Il~~v~~GvDlFD~~~p~r~Ar~G~alt~~g~~~L~~~~~~~Df~Pi~~~C~C~tC~~yTRAYLhHL 295 (349) T 2ash_A 216 KPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTWNGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHL 295 (349) T ss_dssp SCEEECSCCCHHHHHHHHTTTCCEEEESHHHHHHHTTEEEETTEEEETTSGGGTTCCSCSCTTCCSHHHHHCCHHHHHHH T ss_pred CCEECCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCHHHCCCCHHHHHHH T ss_conf 00323466998999999983698354031111126871774143200012300201788688989822241299999867 Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 85785089999999999999999999999998599899999999985327998 Q gi|254780178|r 322 LRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKKGDIP 374 (378) Q Consensus 322 ~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~~~~~ 374 (378) ++++||++.+||++||+++|.+||+.||++|++|+|++|+++|+.+|++++.| T Consensus 296 l~~~E~l~~~LLtiHNl~~~~~l~~~iR~aI~~g~l~~~~~~f~~~~~~~~~~ 348 (349) T 2ash_A 296 FDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVVEVYSSGGVN 348 (349) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTC----- T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 42680789999999999999999999999998599999999999998548998 No 3 >>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} (A:1-358) Probab=100.00 E-value=0 Score=672.32 Aligned_cols=335 Identities=24% Similarity=0.345 Sum_probs=320.0 Q ss_pred CCCCCEEEEEEECCCCEEEEEEECCEEEECCCEEECCCCCCCCCCCHHHHHHCCCCEEEEEHHHHHHCCCHHHHHHCCCC Q ss_conf 98870499997649932799987887540585741068685688688999860998999322665738768998652742 Q gi|254780178|r 1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIARLGGL 80 (378) Q Consensus 1 m~~~~~F~i~~~~~~aR~G~L~t~~g~i~TP~flpv~t~g~v~~lt~~~l~~~g~~~il~Ntyhl~~~pg~~~i~~~gGl 80 (378) |++||+|+|.+++++||+|+|.++||+|+||+||||+++|+++ ++|+++++++++++++|+||++++|+.+.+++.+|| T Consensus 4 ~~~~m~F~v~~~~~~aR~G~L~~~~~~i~TP~fip~t~~g~~~-lt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 82 (358) T 1iq8_A 4 GDKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQMV-VEPKELEKMGFEIIITNSYIIYKDEELRRKALELGI 82 (358) T ss_dssp --CCEEEEEEEEETTEEEEEEEETTEEEEESEEEEBCCSSSCS-SCHHHHHHTTCCEEEEEHHHHHHCHHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCEEEEEECCCEEECCCEEEEECCCEEE-ECHHHHHHHCCCEEEEEHHHCCCCCCHHHHHHCCCH T ss_conf 7861699998643862438998199236189463444385403-479999983899997102224658646665640887 Q ss_pred HHHCCCCCCEEECCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHH Q ss_conf 01101577224114543210122102233331021014454158712999999987328977996012133221158999 Q gi|254780178|r 81 HKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELK 160 (378) Q Consensus 81 h~fl~~~~~ilTDSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~ 160 (378) |+|++|+++++||||+||++|+|.. .+|||+++++|+.+||||+++||+++++++++|+++ T Consensus 83 ~~f~~~~~~iltdSg~~~~~s~G~~-------------------~lt~e~~~~~~~~~~pDi~v~ldd~~~~~~~~k~~~ 143 (358) T 1iq8_A 83 HRMLDYNGIIEVDSGSFQLMKYGSI-------------------EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAV 143 (358) T ss_dssp HHHHTCCSEEEEECSTTHHHHSSCC-------------------SSCHHHHHHHHHHTTCSBBCCCCCCCCTTCCHHHHH T ss_pred HHHCCCCCCEECCCCHHHHEECCCC-------------------CCCCHHHEEEHHHCCCCCEEECCCCCCCCCCHHHHH T ss_conf 8870899973616754776166554-------------------668543266520268760677667789997799999 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHC Q ss_conf 999988999999988513588860554023444366899998876422234676641356751678---99899989850 Q gi|254780178|r 161 RAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPI 237 (378) Q Consensus 161 ~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~ 237 (378) ++|+||.+|+++|+..+ .+++||+||||.+.|+|++|++++.+.+++||+++|++.+++.++ +.+++.++++. T Consensus 144 k~v~rT~~w~~~~~~~~----~~~~~~~i~Gg~~~~lr~~s~~~~~~~~~~~~~i~g~~~~~~~~~~~~ll~~i~~~~~~ 219 (358) T 1iq8_A 144 KELEITLSRAREAEEIK----EIPMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMA 219 (358) T ss_dssp HHHHHHHHHHHHHHHHC----CSCBBCCBCCTTCHHHHHHHHHHHHHSCCSBEEECSCHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH----CCCCCCEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 99999999999876510----04544233266655799999998751899777755656554257899999998751135 Q ss_pred CCHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHCCCCHHH Q ss_conf 77033100254101899999985389836620000023320024562100210123223688559866981336889899 Q gi|254780178|r 238 LPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSALRDYSRAY 317 (378) Q Consensus 238 LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t~~g~i~l~~~~~~~d~~pi~~~C~C~~C~~ytraY 317 (378) ||++||||++|+|+|++|+.+|++|||+|||++|++.|++|+|+|++|.+||++.+|. +|+||+|++||||| T Consensus 220 lp~~kp~~l~g~g~P~~i~~~v~lGvD~fDs~~~~~~a~~G~~l~~~~~i~l~~~~~~--------~C~C~~C~~~tray 291 (358) T 1iq8_A 220 LRPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDELDYF--------PCSCPVCSKYTPQE 291 (358) T ss_dssp SCTTSCEEETTCCCGGGHHHHHHTTCCEEEESHHHHHHHTTEEEETTEEEEGGGCSSC--------CCCSTTTTTCCHHH T ss_pred CCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCCCCC--------CCCCHHHCCCCHHH T ss_conf 8765540004778667788998328873033117788616823678886215346789--------99981213058999 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 98868578508999999999999999999999999859989999999998532 Q gi|254780178|r 318 LHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWKK 370 (378) Q Consensus 318 l~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~~ 370 (378) ||||++++|+ +||++||+++|.+|+++||+||++|+|++|+++|.+.|+. T Consensus 292 ihhL~~~~e~---~ll~~HNl~~~~~~~~~iR~~i~~~~~~~~~~~~~~~~~~ 341 (358) T 1iq8_A 292 LREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELWRLVDERARSHPK 341 (358) T ss_dssp HTTSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH T ss_pred HHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH T ss_conf 9987536740---0899999999999999999999869999999999876989 No 4 >>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} (A:103-134) Probab=98.21 E-value=4e-07 Score=67.52 Aligned_cols=32 Identities=59% Similarity=0.916 Sum_probs=30.0 Q ss_pred CCCCCCHHHHCCCCCCCCEEEECCCCCCEEEEC Q ss_conf 543210122102233331021014454158712 Q gi|254780178|r 95 GGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVS 127 (378) Q Consensus 95 GgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~lt 127 (378) |||||+||++. +|+|+||.|+||+||+++++| T Consensus 1 GGFQvfSL~~l-ri~eeGV~F~S~idGs~~~lt 32 (32) T 2ash_A 1 GGFQVFSLPKI-RIDDEGVVFRSPIDGSKVFLN 32 (32) T ss_dssp CHHHHHTSTTC-EECSSCEEEECTTTCCEEEEC T ss_pred CCCCCCCCCCC-CCCCCCEEEEECCCCCEEECC T ss_conf 76663225544-425685699305688146428 No 5 >>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} (A:1-308,A:422-472) Probab=92.91 E-value=0.71 Score=25.57 Aligned_cols=141 Identities=13% Similarity=0.085 Sum_probs=85.6 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133221158999999988999999988513588860554-02344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFG-IVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfg-iVqGG~~~dLR~~Sa~~l~~ 207 (378) +.++..-..-+-|++-.+|...... . ++...+++++. .. .-+.-+. ..-.....|.-...++++.+ T Consensus 120 ~~f~~~s~~~~~~~~ri~~~~n~~~----~----~~~~i~~ak~~----G~-~v~~~i~~~~~~~~~~e~~~~~a~~l~~ 186 (359) T 1rqb_A 120 DRFVDKSAENGXDVFRVFDAXNDPR----N----XAHAXAAVKKA----GK-HAQGTICYTISPVHTVEGYVKLAGQLLD 186 (359) T ss_dssp HHHHHHHHHTTCCEEEECCTTCCTH----H----HHHHHHHHHHT----TC-EEEEEEECCCSTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHH----H----HHHHHHHHHHC----CC-EEEEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 9999999985138873476788999----9----88889999956----98-7999996167878799999999767773 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC Q ss_conf 223467664135675167899899989850770331002541----018999999853898366200000233200245 Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378) Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378) .+.+-+.|.--+....-+...+++..+...++++.|..+++- --....+.|++.|+|.+|++.--.-.|.|.+=| T Consensus 187 ~G~d~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~~i~i~~H~Hnt~Gla~an~laAi~AGad~IDtai~G~G~~tGn~~t 265 (359) T 1rqb_A 187 XGADSIALXDXAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLXKAIEAGVDVVDTAISSXSLGPGHNPT 265 (359) T ss_dssp TTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBH T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH T ss_conf 6976798715765312779999999999865754331231246064799999999985988983445666788789858 No 6 >>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid biosynthesis, cytoplasm, lysine biosynthesis; HET: AKG; 1.80A {Thermus thermophilus HB27} PDB: 2ztk_A* (A:1-277) Probab=91.29 E-value=1.1 Score=24.32 Aligned_cols=148 Identities=6% Similarity=-0.012 Sum_probs=92.4 Q ss_pred HHHHHHHHHCCCCEEEEEHHHC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 9999998732897799601213-----32211589999999889999999885135888605540234443668999988 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECL-----ALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAE 203 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~-----~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~ 203 (378) ...++.....+.+....+..+. ....+.++..+.+..+.+.+++. ...-+.-+-.+.+....+.-...++ T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~v~~a~~~-----g~~v~~~~~~~~~~~~~~~~~~~~~ 151 (277) T 2ztj_A 77 LDAAKVAVETGVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREA-----APHVEVRFSAEDTFRSEEQDLLAVY 151 (277) T ss_dssp HHHHHHHHHTTCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHH-----CTTSEEEEEETTTTTSCHHHHHHHH T ss_pred CCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCCCCCHHHH T ss_conf 51456677527505899713648988876646999999999999999972-----7750577501224445421101332 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCCC Q ss_conf 76422234676641356751678998999898507703310025-----4101899999985389836620000023320 Q gi|254780178|r 204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRHG 278 (378) Q Consensus 204 ~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G 278 (378) .+.+.+.+.+.|.--.-...-++..+++..+...++++.|.-++ |.+ ....+.|+..|+|.+|++..-.-.|.| T Consensus 152 ~~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~~~l~~H~Hn~~Gla-~An~laAi~aG~~~vd~s~~G~G~~~G 230 (277) T 2ztj_A 152 EAVAPYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCA-IANAYEAIEAGATHVDTTILGIGERNG 230 (277) T ss_dssp HHHGGGCSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCH-HHHHHHHHHTTCCEEEEBGGGCSSTTC T ss_pred HHCCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCH T ss_conf 1012431146751533331001068899999986055776026505067667-677999876341113534558885112 Q ss_pred CCCC Q ss_conf 0245 Q gi|254780178|r 279 LAFT 282 (378) Q Consensus 279 ~~~t 282 (378) .+=+ T Consensus 231 n~~~ 234 (277) T 2ztj_A 231 ITPL 234 (277) T ss_dssp BCBH T ss_pred HHHH T ss_conf 2336 No 7 >>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (A:1-273) Probab=90.19 E-value=1.4 Score=23.67 Aligned_cols=96 Identities=8% Similarity=-0.034 Sum_probs=70.4 Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCH----HHHHHHHHHHCC Q ss_conf 4023444366899998876422234676641356751678998999898507703310025410----189999998538 Q gi|254780178|r 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVG----TPDDILKSVSYG 262 (378) Q Consensus 187 giVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G----~P~~i~~~v~~G 262 (378) ..--++..++--.+.++.+.+.+.+.+.+.--.....-+++.+++..+...+|.+.|.-+++-- -....+.++..| T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~i~l~~H~Hnd~GlA~aN~l~Ai~aG 219 (273) T 1nvm_A 140 LMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEG 219 (273) T ss_dssp EESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTT T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHC T ss_conf 40245665234457888888608631102542024687999999999998627755404773588883999999999809 Q ss_pred CCEEEECCEEECCCCCCCCC Q ss_conf 98366200000233200245 Q gi|254780178|r 263 VDMFDCVMPTRAGRHGLAFT 282 (378) Q Consensus 263 vDlFD~~~ptr~Ar~G~~~t 282 (378) +|.+|++..-.-.|.|.+=+ T Consensus 220 a~~vd~sl~GlG~~aGN~~~ 239 (273) T 1nvm_A 220 CDRVDASLAGMGAGAGNAPL 239 (273) T ss_dssp CCEEEEBGGGCSSTTCBCBH T ss_pred CCEEEEECCCCCCCCCCHHH T ss_conf 88998522358998785309 No 8 >>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A (A:66-396,A:510-576) Probab=87.86 E-value=2 Score=22.60 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=62.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-----CCHHHHHHHHHHHCCCCE Q ss_conf 444366899998876422234676641356751678998999898507703310025-----410189999998538983 Q gi|254780178|r 191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-----GVGTPDDILKSVSYGVDM 265 (378) Q Consensus 191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-----G~G~P~~i~~~v~~GvDl 265 (378) +....|.-...++++.+.+.+-+.|.--+....-+...+++..+...+|. .|.+++ |. -....+.|++.|+|+ T Consensus 191 ~~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~li~~lk~~~p~-i~i~~H~Hnt~Gl-a~An~laAi~aGad~ 268 (398) T 3bg3_A 191 TKYSLQYYMGLAEELVRAGTHILCIXDMAGLLKPTACTMLVSSLRDRFPD-LPLHIHTHDTSGA-GVAAMLACAQAGADV 268 (398) T ss_dssp CTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTT-CCEEEECCCTTSC-HHHHHHHHHHTTCSE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC-CEEEEECCCCCCH-HHHHHHHHHHHCCCE T ss_conf 76789999999999986399789863650026799999999999741787-5599965765454-899999999839888 Q ss_pred EEECCEEECCCCCCCC Q ss_conf 6620000023320024 Q gi|254780178|r 266 FDCVMPTRAGRHGLAF 281 (378) Q Consensus 266 FD~~~ptr~Ar~G~~~ 281 (378) +|++..-.-.+-|.+= T Consensus 269 vD~si~glg~~tGn~~ 284 (398) T 3bg3_A 269 VDVAADSMSGMTSQPS 284 (398) T ss_dssp EEEBCGGGCSTTSCCB T ss_pred EEEEECCCCCCCCCCC T ss_conf 8553146778778844 No 9 >>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthesis, lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A (A:) Probab=87.68 E-value=0.79 Score=25.27 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=14.6 Q ss_pred HEECCCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 100254101899999985389836620 Q gi|254780178|r 243 PHYLMGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 243 Pr~l~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) ++...-.|.-..++.....|.+-+-|. T Consensus 179 ~~~~~~~G~~~~~~~~~~~G~~G~~~~ 205 (292) T 2ojp_A 179 DDFVLLSGDDASALDFMQYGGHGVISV 205 (292) T ss_dssp TTSBCEESCGGGHHHHHHTTCCEEEES T ss_pred CCEEEEECCHHHCCCCCCCCCEEEEEE T ss_conf 975996064110344000684178840 No 10 >>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} (X:) Probab=87.33 E-value=2.1 Score=22.40 Aligned_cols=150 Identities=5% Similarity=-0.083 Sum_probs=86.1 Q ss_pred HHHHHHHHHCCCCEEEEE---HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHH Q ss_conf 999999873289779960---1213322115899999998899999998851358886055402-344436689999887 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL---DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGGDNINLRSFSAER 204 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~L---D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG~~~dLR~~Sa~~ 204 (378) ...++.....+.+....+ ++.-....-.+-.+.++++.....+.+ ....-..-|+.. .+....+--.+.++. T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a----~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 158 (293) T 3ewb_X 83 DRAEEALKDAVSPQIHIFLATSDVHXEYKLKXSRAEVLASIKHHISYA----RQKFDVVQFSPEDATRSDRAFLIEAVQT 158 (293) T ss_dssp HHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHH----HTTCSCEEEEEETGGGSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCCHHHHHHHHHH T ss_conf 999999875599779999730799888875165999999999999887----5077679981133667634568999999 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH--HHEECC-----CCHHHHHHHHHHHCCCCEEEECCEEECCCC Q ss_conf 6422234676641356751678998999898507703--310025-----410189999998538983662000002332 Q gi|254780178|r 205 LKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVE--RPHYLM-----GVGTPDDILKSVSYGVDMFDCVMPTRAGRH 277 (378) Q Consensus 205 l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~--kPr~l~-----G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~ 277 (378) +.+.+.+.+.+.--.-...-+.+.+++..+...+|.. .+..++ |. -....+.|++.|+|.+|++..-.-.|. T Consensus 159 ~~~~g~~~i~l~Dt~G~~~P~~~~~li~~l~~~~~~~~~~~i~~H~Hnd~Gl-a~An~laAi~aG~~~vd~tv~GlG~~~ 237 (293) T 3ewb_X 159 AIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGX-ATANALAAIENGARRVEGTINGIGERA 237 (293) T ss_dssp HHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSC-HHHHHHHHHHTTCCEEEEBGGGCCTTT T ss_pred HHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 9986997998335223358378999999999972320270577616884436-999999999839888955124446544 Q ss_pred CCCCCC Q ss_conf 002456 Q gi|254780178|r 278 GLAFTR 283 (378) Q Consensus 278 G~~~t~ 283 (378) |.+=+- T Consensus 238 Gn~~le 243 (293) T 3ewb_X 238 GNTALE 243 (293) T ss_dssp CBCBHH T ss_pred CCCCHH T ss_conf 683099 No 11 >>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} (A:1-219) Probab=86.55 E-value=1.5 Score=23.39 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=9.8 Q ss_pred CHHHHHHHHHHHCCCCEEEE Q ss_conf 10189999998538983662 Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~ 268 (378) .|.-..++....+|.|-+-+ T Consensus 196 ~G~~~~~~~~l~~G~~G~is 215 (219) T 1xky_A 196 SGDDGLTLPAMAVGAKGIVS 215 (219) T ss_dssp ESSGGGHHHHHHTTCCEEEE T ss_pred ECCCCCCCHHHHCCCCCEEE T ss_conf 57500045498759973354 No 12 >>3ler_A DHDPS, dihydrodipicolinate synthase; TIM barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: MCL MSE; 1.84A {Campylobacter jejuni subsp} (A:) Probab=85.92 E-value=2.3 Score=22.16 Aligned_cols=99 Identities=14% Similarity=0.064 Sum_probs=36.7 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133-22115899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) .+.++++..-|.|-++.+--.-. +.-+.++..+-++.+ .++-....-..+.|+ |+...+.-.+-++...+ T Consensus 31 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~Ls~~Er~~v~~~~-------~~~~~~~~~~vi~gv--~~~~t~~~i~~a~~A~~ 101 (301) T 3ler_A 31 ARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIA-------VETCKGTKVKVLAGA--GSNATHEAVGLAKFAKE 101 (301) T ss_dssp HHHHHHHHTTTCCEEETTSTTTTGGGSCHHHHHHHHHHH-------HHHHTTSSCEEEEEC--CCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH-------HHHHCCCCCEEEEEC--CCCHHHHHHHHHHHHHH T ss_conf 999999997599989978122026658999999999999-------998558998299978--85209999999999997 Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHH Q ss_conf 22346766413567-516789989998985 Q gi|254780178|r 208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLP 236 (378) Q Consensus 208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~ 236 (378) .+.++..+.--... .+.+++.+-...+.+ T Consensus 102 ~Gad~ilv~~P~~~~~~~~~i~~~~~~i~~ 131 (301) T 3ler_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQ 131 (301) T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHH T ss_conf 599988735888889899999999999986 No 13 >>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MCSG, protein structure initiative; 1.20A {Agrobacterium tumefaciens str} (A:1-228) Probab=84.56 E-value=2.9 Score=21.50 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=19.5 Q ss_pred HHEECCCCHHHHHHHHHHHCCCCEEEECC Q ss_conf 31002541018999999853898366200 Q gi|254780178|r 242 RPHYLMGVGTPDDILKSVSYGVDMFDCVM 270 (378) Q Consensus 242 kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378) .|....-.|.-..++.....|.|-+-+.. T Consensus 185 ~~~~~v~~G~d~~~~~~l~~G~~G~is~~ 213 (228) T 3b4u_A 185 HGDLAILIGDERDLARGVRLGGQGAISGV 213 (228) T ss_dssp HTTSEEEECCHHHHHHHHHTTCCEEEESG T ss_pred CCCCCCCCCCCCCCCHHHCCCCCEEECCH T ss_conf 44432346864322313326887253537 No 14 >>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; 1.50A {Hahella chejuensis} (A:1-243) Probab=83.98 E-value=1.7 Score=23.04 Aligned_cols=124 Identities=15% Similarity=0.066 Sum_probs=58.8 Q ss_pred HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 999999987328977996012133-2211589999999889999999885135888605540234443668999988764 Q gi|254780178|r 128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK 206 (378) Q Consensus 128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~ 206 (378) -.+.++++...|.|-++...-.-. ..-+.++.++-++.+ .+.+ ...-..+.|+ |+...+.-.+-++... T Consensus 23 ~~~~i~~l~~~Gv~gi~v~Gt~GE~~~lt~~Er~~l~~~~---~~~~-----~~~~~vi~gv--~~~~~~~~i~~a~~a~ 92 (243) T 2rfg_A 23 LAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALV---AEQA-----QGRVPVIAGA--GSNNPVEAVRYAQHAQ 92 (243) T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHH---HHHH-----TTSSCBEEEC--CCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH---HHHC-----CCCCEEEEEC--CCCCHHHHHHHHHHHH T ss_conf 9999999997799989968426563148999999999999---9991-----8984099734--5446999999999999 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCCHHHHEEC----CCC-HHHHHHHHHHHC Q ss_conf 222346766413567-5167899899989850770331002----541-018999999853 Q gi|254780178|r 207 ELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILPVERPHYL----MGV-GTPDDILKSVSY 261 (378) Q Consensus 207 ~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP~~kPr~l----~G~-G~P~~i~~~v~~ 261 (378) +.+.++..+.-.... .+.+++.+-...+.+..+..--.|- .|+ -+|..+..+.+. T Consensus 93 ~~G~d~i~~~~P~~~~~~~~~i~~~~~~ia~a~~~pi~iyn~P~~~g~~~~~~~~~~l~~~ 153 (243) T 2rfg_A 93 QAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAAL 153 (243) T ss_dssp HHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHTS T ss_pred HCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC T ss_conf 8499976426877789899999999999975379858999457534688899999998407 No 15 >>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} (A:1-217) Probab=83.74 E-value=3.1 Score=21.27 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=8.5 Q ss_pred HHHHHHHHHCCCCEEEEE Q ss_conf 999999873289779960 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378) ++.++++..-|.|-++.+ T Consensus 36 ~~~i~~l~~~Gv~gi~v~ 53 (217) T 3d0c_A 36 DDNVEFLLQNGIEVIVPN 53 (217) T ss_dssp HHHHHHHHHTTCSEECTT T ss_pred HHHHHHHHHCCCCEEEEC T ss_conf 999999997699989968 No 16 >>1xxx_A DHDPS, dihydrodipicolinate synthase; DAPA, RV2753C, lysine biosynthesis, structural genomics, PSI protein structure initiative; 2.28A {Mycobacterium tuberculosis} (A:1-219) Probab=83.21 E-value=2.4 Score=21.97 Aligned_cols=18 Identities=11% Similarity=-0.158 Sum_probs=7.7 Q ss_pred HHHHHHHHHCCCCEEEEE Q ss_conf 999999873289779960 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378) ++.++++..-|.|-++.. T Consensus 38 ~~~i~~~~~~Gv~gi~v~ 55 (219) T 1xxx_A 38 ARLANHLVDQGCDGLVVS 55 (219) T ss_dssp HHHHHHHHHTTCSEEEES T ss_pred HHHHHHHHHCCCCEEEEC T ss_conf 999999997799989978 No 17 >>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} (A:) Probab=82.23 E-value=2.6 Score=21.77 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=6.5 Q ss_pred HHHHHHHHCCCCEEEEE Q ss_conf 99999873289779960 Q gi|254780178|r 130 ESVHIQNLLGSDIQMQL 146 (378) Q Consensus 130 ~~i~~q~~lg~DI~~~L 146 (378) +.+++...-|.|-++.+ T Consensus 25 ~~i~~l~~~Gv~gl~~~ 41 (294) T 2ehh_A 25 NLIEFHVDNGTDAILVC 41 (294) T ss_dssp HHHHHHHTTTCCEEEES T ss_pred HHHHHHHHCCCCEEEEC T ss_conf 99999997699989978 No 18 >>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=82.18 E-value=3.6 Score=20.87 Aligned_cols=152 Identities=11% Similarity=-0.033 Sum_probs=85.2 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH Q ss_conf 9999998732897799601213322115899999998899999998851358886055402-344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV-QGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-qGG~~~dLR~~Sa~~l~~ 207 (378) ...++.....+.+++..+....+.....+ ..+..+....++.++.+..+...-..-|.+. -.-..++.-.+-++.+.+ T Consensus 84 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 162 (325) T 3eeg_A 84 NIAGEALRFAKRSRIHTGIGSSDIHIEHK-LRSTRENILEXAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARXVEAVIE 162 (325) T ss_dssp HHHHHHHTTCSSEEEEEEEECSHHHHC-----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHH T ss_conf 65699998558857998514549999988-76668889999999999887605324423565443069999999999998 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC--HHHHEECCCCH----HHHHHHHHHHCCCCEEEECCEEECCCCCCCC Q ss_conf 22346766413567516789989998985077--03310025410----1899999985389836620000023320024 Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILP--VERPHYLMGVG----TPDDILKSVSYGVDMFDCVMPTRAGRHGLAF 281 (378) Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP--~~kPr~l~G~G----~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~ 281 (378) .+.+.+.+.--.-...-++..+++..+...++ ++.|..+++-- -....+.|+..|+|.+|++..-.-.|.|.+= T Consensus 163 ~g~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~p~~~i~~H~Hnd~Gla~An~l~A~~aGa~~vd~si~G~G~r~Gn~~ 242 (325) T 3eeg_A 163 AGADVVNIPDTTGYXLPWQYGERIKYLXDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIGERAGNTA 242 (325) T ss_dssp HTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCCSTTCCCB T ss_pred CCCCEEEECCCCCCEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCCCCCC T ss_conf 49989995155665531167889999987304888624788754645654688999996474132356455577655564 No 19 >>1sr9_A 2-isopropylmalate synthase; TIM barrel, transferase; 2.00A {Mycobacterium tuberculosis} (A:1-370) Probab=81.85 E-value=2.4 Score=22.03 Aligned_cols=81 Identities=9% Similarity=-0.082 Sum_probs=55.8 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH--HHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECC Q ss_conf 887642223467664135675167899899989850770--331002541----01899999985389836620000023 Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV--ERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAG 275 (378) Q Consensus 202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~--~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378) ++.+.+.+.+-+.|.--.....-+...+++..+...+|. +.|.++++- --....+.|+..|+|.+|++.--.-. T Consensus 238 a~~~~~~g~~~i~i~Dt~G~~~P~~~~~lv~~l~~~~~~~~~i~i~~H~Hn~~Gla~An~laA~~aGa~~Vd~sl~G~G~ 317 (370) T 1sr9_A 238 VIAPTPERPIIFNLPATVEXTTPNVYADSIEWXSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE 317 (370) T ss_dssp HHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS T ss_pred HCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 56332269469981554454301578999999986057877714999625415566777899887666315621014666 Q ss_pred CCCCCCC Q ss_conf 3200245 Q gi|254780178|r 276 RHGLAFT 282 (378) Q Consensus 276 r~G~~~t 282 (378) |-|.+=+ T Consensus 318 ~tGn~~l 324 (370) T 1sr9_A 318 RTGNVCL 324 (370) T ss_dssp TTCBCBH T ss_pred CCCCCCH T ss_conf 6688448 No 20 >>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=81.25 E-value=2.9 Score=21.49 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=41.6 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133-22115899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) ...+++.-.-|.|-++.+----. +.-+.++.++-++.+ .++- ...-..+.|+ |+...+.-.+-++...+ T Consensus 24 ~~~i~~l~~~Gv~gl~~~G~~gE~~~lt~~Er~~~~~~~-------~~~~-~~~~~ii~g~--~~~s~~~ai~~a~~a~~ 93 (289) T 2yxg_A 24 EENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKV-------VDVV-NGRVQVIAGA--GSNCTEEAIELSVFAED 93 (289) T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHH-------HHHH-TTSSEEEEEC--CCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHH-------HHHC-CCCEEEEECC--CCCHHHHHHHHHHHHHH T ss_conf 999999997799989978544236658999999999999-------9860-7970699715--74019999999999997 Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC Q ss_conf 22346766413567-516789989998985077 Q gi|254780178|r 208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP 239 (378) Q Consensus 208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP 239 (378) .++++..+.-.... .+.+++.+-...+.+..+ T Consensus 94 ~G~d~v~i~pP~~~~~s~~~i~~~~~~ia~a~~ 126 (289) T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAESIN 126 (289) T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 799999988987889899999999999998279 No 21 >>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} (A:) Probab=79.28 E-value=4.4 Score=20.23 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=45.2 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133-22115899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) ++.++++..-|.|=++.+--.-. +.-+.++.++-++.. .+. ......++|+ |+...+.-.+-++...+ T Consensus 32 ~~~i~~l~~~Gv~gi~~~GstGE~~~Lt~~Er~~l~~~~-------~~~--~~~~~ii~gv--~~~st~~~ie~a~~a~~ 100 (313) T 3dz1_A 32 DRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRF-------IKR--AKSXQVIVGV--SAPGFAAXRRLARLSXD 100 (313) T ss_dssp HHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHH-------HHH--CTTSEEEEEC--CCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEEECCCHHHCCHHHHHHHHHHH-------HHH--CCCCCEEEEE--CCCHHHHHHHHHHHHHH T ss_conf 999999997699989976575672338999999999986-------520--3565313310--22004667777653443 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCC-------CHHHHHHHHHH Q ss_conf 22346766413567516789989998985077033100254-------10189999998 Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMG-------VGTPDDILKSV 259 (378) Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G-------~G~P~~i~~~v 259 (378) .+.++..+.-.-...+.+.+.+-...+.+....+.|.++.. .-+|..+...+ T Consensus 101 ~Gad~v~v~Ppy~~~~~~~i~~~~~~i~~a~~~~iPi~iYn~P~~~g~~l~~~~~~~l~ 159 (313) T 3dz1_A 101 AGAAGVXIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVXTPKVIRQIV 159 (313) T ss_dssp HTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHH T ss_conf 12333334653112443368888998887405778646762342223447899999876 No 22 >>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, JCSG, PSI, protein structure initiative; HET: MCL; 1.80A {Thermotoga maritima} (A:) Probab=79.05 E-value=4.5 Score=20.19 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=9.1 Q ss_pred CCCCHHHHHHHHHHHCCCCEEE Q ss_conf 2541018999999853898366 Q gi|254780178|r 246 LMGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 246 l~G~G~P~~i~~~v~~GvDlFD 267 (378) ....|.-..++....+|.|-+= T Consensus 197 ~~~~g~d~~~~~~l~~G~~g~~ 218 (306) T 1o5k_A 197 MVWSGNDDRTFYLLCAGGDGVI 218 (306) T ss_dssp EEEESSGGGHHHHHHHTCCEEE T ss_pred EEECCCHHHHHHHHHCCCCCEE T ss_conf 8954751888888754996144 No 23 >>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, pyruvate, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} (A:1-236) Probab=78.63 E-value=4.6 Score=20.10 Aligned_cols=19 Identities=21% Similarity=-0.076 Sum_probs=11.3 Q ss_pred HHHHHHHHHCCCCEEEEEH Q ss_conf 9999998732897799601 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLD 147 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD 147 (378) .+.+++....|.|-++.+. T Consensus 24 ~~~~~~l~~~Gv~gi~~~G 42 (236) T 2vc6_A 24 HDLVEWQIEEGSFGLVPCG 42 (236) T ss_dssp HHHHHHHHHTTCSEEETTS T ss_pred HHHHHHHHHCCCCEEEECE T ss_conf 9999999977999999751 No 24 >>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} (A:1-291,A:403-464) Probab=78.08 E-value=4.8 Score=20.00 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=83.6 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC-CCCHHHHHHHHHHHHH Q ss_conf 999999873289779960121332211589999999889999999885135888605540234-4436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQG-GDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqG-G~~~dLR~~Sa~~l~~ 207 (378) +..+..-..-+.|++-.+|..-.. ... +...+.++++ ... -+.-+...-+ ....|--...++.+.+ T Consensus 103 ~~~v~~s~~~~~~~~r~~~~~~~~----~~~----~~~i~~ak~~----G~~-~~~~i~~~~s~~~~~~~~~~~~~~l~~ 169 (353) T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDV----RNM----QQALQAVKKM----GAH-AQGTLCYTTSPVHNLQTWVDVAQQLAE 169 (353) T ss_dssp HHHHHHHHHTTCCEEEECCTTCCT----HHH----HHHHHHHHHT----TCE-EEEEEECCCCTTCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHH----HHH----HHHHHHHHHC----CCC-EEEEEECCCCCCCCHHHHHHHHHHHHC T ss_conf 778889886130899875488789----999----9999999981----771-023332156888789999999998742 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC Q ss_conf 223467664135675167899899989850770331002---541018999999853898366200000233200245 Q gi|254780178|r 208 LDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT 282 (378) Q Consensus 208 ~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t 282 (378) ++.+.+.|.-......-++..+++..+....+..-=.|. .|. -....+.|++.|+|.+|++.--.-.+.|.+=| T Consensus 170 ~gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gl-a~an~l~Ai~aGad~IDtsi~glG~~tGn~~t 246 (353) T 2nx9_A 170 LGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGL-ADMTLLKAIEAGVDRVDTAISSMSGTYGHPAT 246 (353) T ss_dssp TTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSC-HHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBH T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHHHHHHCCCCEEECCCCCCCCCCCCCCH T ss_conf 698578842676656279999999999863576178984771778-99999999983998998378788998316879 No 25 >>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:523-742,A:762-821) Probab=76.38 E-value=5.3 Score=19.69 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=71.9 Q ss_pred ECHHHHHHH---HHHCCCCEEEEEHHHCCCCCCH------HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHH Q ss_conf 129999999---8732897799601213322115------8999999988999999988513588860554023444366 Q gi|254780178|r 126 VSPEESVHI---QNLLGSDIQMQLDECLALPAED------KELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNIN 196 (378) Q Consensus 126 ltpe~~i~~---q~~lg~DI~~~LD~~~~~~~~~------k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~d 196 (378) -+|+++.+. .+..|.|.+..=-.|+...... .+..+-+-...+|..+ .......+.. -...| T Consensus 123 ~~~~~~~~aa~~~~~~g~d~Iein~~~~~~~~~~~~g~~~~~~~~~~~e~i~~v~~------~~~~pv~vk~---r~~~~ 193 (280) T 1gte_A 123 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ------AVQIPFFAKL---TPNVT 193 (280) T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHH------HCSSCEEEEE---CSCSS T ss_pred CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH------CCCCCEEEEE---CCCHH T ss_conf 99999999999745358888999767899987433343110168999999999861------7899879997---99827 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--------CCC-HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE Q ss_conf 899998876422234676641356--------751-67899899989850770331002-54101899999985389836 Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAV--------GEP-QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378) Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~--------ge~-~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378) .-.+-++.+.+.+++++.|.+-.. +.. .......+..+....+. .|... -|+.+|.++..++++|.|.. T Consensus 194 d~~e~a~~l~e~Gvd~I~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ii~~ggi~~~~~~~~~~~~GA~~v 272 (280) T 1gte_A 194 DIVSIARAAKEGGADGVTATNTVSGLMYGGVSGTAIRPIALRAVTTIARALPG-FPILATGGIDSAESGLQFLHSGASVL 272 (280) T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCEEEESGGGHHHHHHHHHHHHHHSTT-CCEEEESSCCSHHHHHHHHHTTCSEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHCCCCHH T ss_conf 89999999998599699995677765567002788899999999999987699-87999899899999999998699799 Q ss_pred EE Q ss_conf 62 Q gi|254780178|r 267 DC 268 (378) Q Consensus 267 D~ 268 (378) =. T Consensus 273 ~~ 274 (280) T 1gte_A 273 QV 274 (280) T ss_dssp EE T ss_pred HH T ss_conf 87 No 26 >>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, cytoplasm; 2.00A {Neisseria meningitidis serogroup B} (A:) Probab=75.93 E-value=5.5 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=7.6 Q ss_pred HHHHHHHHHCCCCEEEEE Q ss_conf 999999873289779960 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378) +..++++..-|.|-+..+ T Consensus 31 ~~~i~~l~~~Gv~gi~~~ 48 (297) T 3flu_A 31 RDLIDWHIENGTDGIVAV 48 (297) T ss_dssp HHHHHHHHHTTCCEEEES T ss_pred HHHHHHHHHCCCCEEEEC T ss_conf 999999997699989968 No 27 >>3g1v_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, D70G; HET: 5FU; 1.30A {Methanothermobacter thermautotrophicusstr} PDB: 3g1s_A* 3g1x_A* 1kly_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3g1a_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 1loq_A* 1lor_A* 1km0_A* 1dv7_A 2zz3_A* 1km1_A* 1km6_A* 1km5_A* ... (A:) Probab=75.92 E-value=4.9 Score=19.93 Aligned_cols=122 Identities=12% Similarity=-0.008 Sum_probs=65.8 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH---HHHHH Q ss_conf 129999999873289779960121332211589999999889999999885135888605540234443668---99998 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINL---RSFSA 202 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dL---R~~Sa 202 (378) -+++.+++.-..+|+|.+..-+... +.+.+++.++.+.... ..+.+... ..++. ..... T Consensus 78 ~~~~~~~~~~~~~gad~v~v~~~~~-------------~~~~~~~~~~~~~~~~----~~~~l~~~-t~~~~~~~~~~~~ 139 (228) T 3g1v_A 78 ETNEKICRATFKAGADAIIVHGFPG-------------ADSVRACLNVAEEMGR----EVFLLTEM-SHPGAEMFIQGAA 139 (228) T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTC-------------HHHHHHHHHHHHHHTC----EEEEECSC-SSGGGGTTHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-------------HHHHHHHHHHHHHHCC----CEEEEECC-CCCCHHHHHHHHH T ss_conf 7999999999854998999861389-------------7899999999885188----40341011-4651777777799 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 8764222346766413567516789989998985077033100254101899999985389836620 Q gi|254780178|r 203 ERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 203 ~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) +.+...-..+ ...|... .....+-+......++...|....|.+.+.++..+++.|+|.+-.- T Consensus 140 ~~~~~~~~~~-~~~G~~~---~~~~~~~~~~~~~~~~~~~~i~~~Gg~~~~~~~~~~~~Gad~vvvG 202 (228) T 3g1v_A 140 DEIARMGVDL-GVKNYVG---PSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVG 202 (228) T ss_dssp HHHHHHHHHT-TCCEEEC---CTTCHHHHHHHHHHHCTTSEEEECCBSTTSBCHHHHTTTCSEEEEC T ss_pred HHHHHHHHHH-CCCCEEC---CCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCEEEEC T ss_conf 9999999983-8873023---5579999999998538871899668876889977887539999989 No 28 >>3bi8_A Dihydrodipicolinate synthase; TIM-barrel, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MLT; 1.96A {Clostridium botulinum} PDB: 3ird_A* (A:) Probab=74.78 E-value=5.9 Score=19.42 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=10.2 Q ss_pred CCHHHHHHHHHHHCCCCEEEEC Q ss_conf 4101899999985389836620 Q gi|254780178|r 248 GVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 248 G~G~P~~i~~~v~~GvDlFD~~ 269 (378) -.|....++....+|.|-+-|. T Consensus 184 ~~g~d~~~~~~~~~G~~G~~~~ 205 (291) T 3bi8_A 184 YSGNDDQIIPILALGGIGVISV 205 (291) T ss_dssp EESCGGGHHHHHHTTCCEEEES T ss_pred ECCCHHHHHHHHHCCCCEEECC T ss_conf 0783788899986799800104 No 29 >>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefaciens STR. C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} (A:1-280) Probab=74.17 E-value=6.1 Score=19.32 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=48.0 Q ss_pred HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 999999987328977996012133-2211589999999889999999885135888605540234443668999988764 Q gi|254780178|r 128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK 206 (378) Q Consensus 128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~ 206 (378) -++.++++..-|.|-++.+--.-. ..-+.++.++-++... +.+ ...-..+.|+ |+...+.-.+-+++.. T Consensus 57 ~~~~i~~li~~Gv~Gi~i~Gs~GE~~~Ls~eEr~~l~~~~~---~~~-----~~r~~vi~g~--~~~st~~~i~~a~~A~ 126 (280) T 2r8w_A 57 FSALIARLDAAEVDSVGILGSTGIYXYLTREERRRAIEAAA---TIL-----RGRRTLXAGI--GALRTDEAVALAKDAE 126 (280) T ss_dssp HHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHH---HHH-----TTSSEEEEEE--CCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---HHH-----CCCCCCCCCC--CHHHHHHHHHHHHHHC T ss_conf 99999999977999999782065542489999999999999---973-----1454201233--1025778889987620 Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC Q ss_conf 222346766413567-516789989998985077 Q gi|254780178|r 207 ELDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP 239 (378) Q Consensus 207 ~~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP 239 (378) +.+.++..+--.... -+.+.+.+-...+.+..| T Consensus 127 ~~G~d~vlv~pP~~~~~~~~~i~~~~~~ia~a~~ 160 (280) T 2r8w_A 127 AAGADALLLAPVSYTPLTQEEAYHHFAAVAGATA 160 (280) T ss_dssp HHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 3454322212233456552366766545554125 No 30 >>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} (A:1-221) Probab=73.75 E-value=6.2 Score=19.25 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=11.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 3444366899998876422234676641 Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGG 217 (378) Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgG 217 (378) +|-++.|.-++-++.+.+.+++|+.+.| T Consensus 31 d~~iD~~~~~~~i~~l~~~Gv~gi~v~G 58 (221) T 3cpr_A 31 SGDIDIAAGREVAAYLVDKGLDSLVLAG 58 (221) T ss_dssp TSCBCHHHHHHHHHHHHHTTCCEEEESS T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECE T ss_conf 9593999999999999977999899784 No 31 >>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; 1.45A {Staphylococcus aureus} PDB: 3di1_A 3di0_A (A:1-229) Probab=70.22 E-value=7.4 Score=18.73 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHCCCCEEEE Q ss_conf 0189999998538983662 Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 250 G~P~~i~~~v~~GvDlFD~ 268 (378) |.-..++....+|.|-+-| T Consensus 188 G~d~~~~~~~~~G~~G~i~ 206 (229) T 3daq_A 188 GNDDNVVEYYQRGGQGVIS 206 (229) T ss_dssp SCGGGHHHHHHTTCCEEEE T ss_pred CCHHHHHHHHHCCCCEEEC T ss_conf 8657678998359961243 No 32 >>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:495-825,A:946-1003) Probab=69.76 E-value=7.6 Score=18.66 Aligned_cols=144 Identities=10% Similarity=0.007 Sum_probs=81.5 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCEEEEEC-CCCCCHHHHHHHHHHH Q ss_conf 999999873289779960121332211589999999889999999885135-88-86055402-3444366899998876 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGN-QP-GKALFGIV-QGGDNINLRSFSAERL 205 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~-~~-~~~lfgiV-qGG~~~dLR~~Sa~~l 205 (378) +..++.-...|-|++-.+|.+.....-. ...+.++++...... .. -...|+.- .+...++.-.+-++.+ T Consensus 136 ~~~~~~a~~~g~d~~rif~~~n~~~~~~--------~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~l 207 (389) T 3hbl_A 136 HKFVQESAKAGIDVFRIFDSLNWVDQMK--------VANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKEL 207 (389) T ss_dssp HHHHHHHHHTTCCEEEEECTTCCGGGGH--------HHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHH--------HHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHH T ss_conf 9999999972898798614131088889--------99999997205445679974056887657766899999999987 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCCCCCCC Q ss_conf 42223467664135675167899899989850770331002---54101899999985389836620000023320024 Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF 281 (378) Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~ 281 (378) .+.+.+.+.|---+....-+...+++..+....+..-=.|. +|. -....+.|++.|+|.+|++..-.-.+-|.+= T Consensus 208 ~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~i~i~~H~Hnt~Gl-a~An~laAi~aGvd~VD~si~gmg~~tGn~~ 285 (389) T 3hbl_A 208 EREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGN-GLLTYKQAIDAGVDIIDTAVASMSGLTSQPS 285 (389) T ss_dssp HHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCCSCEEEEECBTTSC-HHHHHHHHHHTTCSEEEEBCGGGCSBTSCCB T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCC T ss_conf 63488679973875565768999999999860798558734888642-7999999997499889841133557768976 No 33 >>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419) Probab=69.59 E-value=7.7 Score=18.64 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=12.1 Q ss_pred HHHHHHCCCCEEEECCEEECC Q ss_conf 999985389836620000023 Q gi|254780178|r 255 ILKSVSYGVDMFDCVMPTRAG 275 (378) Q Consensus 255 i~~~v~~GvDlFD~~~ptr~A 275 (378) +-.++..|++..=|++-.-.+ T Consensus 255 F~~~~~ag~~~vM~s~~~~~~ 275 (419) T 3bmx_A 255 FQKAIDAGADMVMTAHVQFPA 275 (419) T ss_dssp HHHHHHTTCCEEEECCCBCTT T ss_pred HHHHHHCCCCEEEEEECCCCC T ss_conf 999997399838985101355 No 34 >>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A (A:) Probab=68.68 E-value=8 Score=18.51 Aligned_cols=124 Identities=10% Similarity=-0.037 Sum_probs=59.1 Q ss_pred HHHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 999999987328977996012133-2211589999999889999999885135888605540234443668999988764 Q gi|254780178|r 128 PEESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK 206 (378) Q Consensus 128 pe~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~ 206 (378) -...++++..-|.|-++..--.-. ..-+.++.++-++.+. +.- ..+-..++|+ |+...+.-.+-++... T Consensus 31 ~~~~~~~l~~~G~~gi~~~GstGE~~~Lt~eEr~~li~~~~-------~~~-~~~~~vi~gv--~~~~t~~~i~~a~~a~ 100 (309) T 3fkr_A 31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTIL-------EHV-AGRVPVIVTT--SHYSTQVCAARSLRAQ 100 (309) T ss_dssp HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHH-------HHH-TTSSCEEEEC--CCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH-------HHC-CCCCEEEEEC--CCCCHHHHHHHHHHHH T ss_conf 99999999975999899783534546479999999999999-------970-6986189836--8786899999999962 Q ss_pred HHHHHHHHHHCCC---CCC-CHHHHHHHHHHHHHCCCHHHHEE----CCCC-HHHHHHHHHHHC Q ss_conf 2223467664135---675-16789989998985077033100----2541-018999999853 Q gi|254780178|r 207 ELDLKGYAIGGLA---VGE-PQEVMLHILSNVLPILPVERPHY----LMGV-GTPDDILKSVSY 261 (378) Q Consensus 207 ~~~~~G~aIgGl~---~ge-~~~~~~~ii~~~~~~LP~~kPr~----l~G~-G~P~~i~~~v~~ 261 (378) +.+.+|..+.-.. ..+ +.+.+.+-...+.+..+..--.| ..|. -+|..+...++. T Consensus 101 ~~Gad~v~i~pP~~~~~~~~s~~~i~~y~~~i~~a~~~pi~iYn~P~~~g~~~~~~~l~~l~~~ 164 (309) T 3fkr_A 101 QLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAREI 164 (309) T ss_dssp HTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHHHS T ss_pred HCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCC T ss_conf 1499789963874456789899999999999973038976885277655677889999998548 No 35 >>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, , PSI-2, protein structure initiative; 1.80A {Bacillus clausii ksm-k16} (A:1-217) Probab=67.82 E-value=8.3 Score=18.40 Aligned_cols=15 Identities=13% Similarity=-0.188 Sum_probs=6.4 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 999998538983662 Q gi|254780178|r 254 DILKSVSYGVDMFDC 268 (378) Q Consensus 254 ~i~~~v~~GvDlFD~ 268 (378) .+.....+|.|-+-| T Consensus 199 ~l~~~l~~Ga~G~~s 213 (217) T 3e96_A 199 WAPFFWHAGAKGFTS 213 (217) T ss_dssp THHHHHHHTCCEEEE T ss_pred CHHHHCCCCCCEEEE T ss_conf 102321346874576 No 36 >>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensation, amino-acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* (A:1-311) Probab=67.71 E-value=8.4 Score=18.39 Aligned_cols=146 Identities=6% Similarity=0.025 Sum_probs=86.0 Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCCCCCC------HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-EECCCCCCHHHHH Q ss_conf 29999999873289779960121332211------5899999998899999998851358886055-4023444366899 Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLALPAE------DKELKRAMELSLRWAERSLVAFGNQPGKALF-GIVQGGDNINLRS 199 (378) Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~------~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf-giVqGG~~~dLR~ 199 (378) .....++.....+.+....+......... .....+.+..+.++++ +.....-+ -..-.....+.-. T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ak-------~~G~~v~~~~~~~~~~~~~~~~ 183 (311) T 3ivs_A 111 CHXDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVK-------SKGIEVRFSSEDSFRSDLVDLL 183 (311) T ss_dssp SCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHH-------TTTCEEEEEEESGGGSCHHHHH T ss_pred CCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCC-------CCCCCCCCCCCHHCCCCCCHHH T ss_conf 580669999970577423886231555332011111002330011210011-------2321323333200134321013 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEEECCEEECCC Q ss_conf 99887642223467664135675167899899989850770331002---541018999999853898366200000233 Q gi|254780178|r 200 FSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 200 ~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) +.++.+.+.+.+.+.|.--.....-+.+.+++..........-=.|. +|.+ -...+.|++.|+|.+|++..-.-.| T Consensus 184 ~~~~~~~~~g~d~i~l~Dt~G~~~P~~~~~li~~~~~~~~~~l~~H~Hnd~Gla-~An~laAl~aG~~~id~sv~G~G~r 262 (311) T 3ivs_A 184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCDIECHFHNDTGXA-IANAYCALEAGATHIDTSILGIGER 262 (311) T ss_dssp HHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCSSEEEEEEBCTTSCH-HHHHHHHHHTTCCEEEEBGGGCSST T ss_pred HHHHHHCCCCCCCEECCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCCHHHH-HHHHHHHHHCCCCEECCCCCCCCCC T ss_conf 323343013422121023211358620125886302331000330125535444-4789999871653101123455765 Q ss_pred CCCC Q ss_conf 2002 Q gi|254780178|r 277 HGLA 280 (378) Q Consensus 277 ~G~~ 280 (378) .|.+ T Consensus 263 ~Gn~ 266 (311) T 3ivs_A 263 NGIT 266 (311) T ss_dssp TCBC T ss_pred CCCC T ss_conf 4665 No 37 >>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino- acid biosynthesis, schiff base, cytoplasm, diaminopimelate biosynthesis; HET: MES; 1.99A {Streptococcus pneumoniae} (A:1-214) Probab=65.71 E-value=9.1 Score=18.13 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=12.3 Q ss_pred EECCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 0025410189999998538983662 Q gi|254780178|r 244 HYLMGVGTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 244 r~l~G~G~P~~i~~~v~~GvDlFD~ 268 (378) +...-.|.-..++....+|.|-+-| T Consensus 186 ~~~i~~G~d~~~~~~l~~G~~G~~s 210 (214) T 3h5d_A 186 EFLIYTGEDGDAFHAMNLGADGVIS 210 (214) T ss_dssp SCEEEECCGGGHHHHHHHTCCEEEE T ss_pred CCEEECCCHHHHHHHHHCCEEEEEE T ss_conf 8067217536565787558058863 No 38 >>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreductase; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* (A:) Probab=63.78 E-value=8 Score=18.53 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC Q ss_conf 999887642223467664135--6751678998999898507703310025-4101899999985389836620000023 Q gi|254780178|r 199 SFSAERLKELDLKGYAIGGLA--VGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378) Q Consensus 199 ~~Sa~~l~~~~~~G~aIgGl~--~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378) ...+..+.+.+++++.++|-. .....+...+.+.......-...|...- |+-++.||+.|++||.|..=..-|...+ T Consensus 240 ~~~a~~~~~~G~d~I~v~g~gG~~~~~~~~~~~~~~~~~~~~~~~i~IiadGGIr~g~Di~KALaLGAd~V~iGr~~l~~ 319 (368) T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALGRPVLFG 319 (368) T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHH T ss_pred HHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHH T ss_conf 77776888638761010000013345774211225467751277531575067576789999998289967657899999 No 39 >>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A (A:1-278) Probab=61.29 E-value=11 Score=17.60 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=44.2 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133-22115899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) ++.++++..-|.+-++.+--.-. +.-+.++.++-++.+.+-+ ...-..++|+ |+...+.-.+-+++..+ T Consensus 55 ~~~i~~~~~~Gv~gl~i~GstGE~~~Lt~~Er~~l~~~~~~~~--------~~~~~vi~g~--~~~st~~ai~~a~~a~~ 124 (278) T 2v9d_A 55 AALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHV--------DRRVPVLIGT--GGTNARETIELSQHAQQ 124 (278) T ss_dssp HHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHH--------TTSSCEEEEC--CSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECEEHHHHHHCCHHHHHHHHHHHHHHC--------CCCCCEEECC--CCCCCHHHHHHHHHHHH T ss_conf 9999999986999999784466367684999999999999872--------6655244224--55662068999999986 Q ss_pred HHHHHHHHHCCCCC-CCHHHHHHHHHHHHHCCC Q ss_conf 22346766413567-516789989998985077 Q gi|254780178|r 208 LDLKGYAIGGLAVG-EPQEVMLHILSNVLPILP 239 (378) Q Consensus 208 ~~~~G~aIgGl~~g-e~~~~~~~ii~~~~~~LP 239 (378) .+.++..+.-.... -+.+.+.+-...+.+..+ T Consensus 125 ~G~d~vli~pP~~~~~~~~~i~~~~~~i~~a~~ 157 (278) T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSVT 157 (278) T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCS T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC T ss_conf 267704652022344220058899999998459 No 40 >>1x38_A Beta-D-glucan exohydrolase isoenzyme EXOI; 2-domain fold, ligand-protein complex; HET: NAG BMA FUC MAN IDD GOL; 1.70A {Hordeum vulgare} (A:1-365) Probab=60.24 E-value=11 Score=17.48 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=15.1 Q ss_pred HHHHHHCCCCEEEECCEEECCCC Q ss_conf 99998538983662000002332 Q gi|254780178|r 255 ILKSVSYGVDMFDCVMPTRAGRH 277 (378) Q Consensus 255 i~~~v~~GvDlFD~~~ptr~Ar~ 277 (378) +-.+++.|+...=|+|..-.... T Consensus 238 F~~~~~~g~~~vM~~y~~i~~~p 260 (365) T 1x38_A 238 YKNAMDKGVSTVMISYSSWNGVK 260 (365) T ss_dssp HHHHHHTTCCEEEECSSEETTEE T ss_pred HHHHHHHCCCCCCCCCCCCCCCC T ss_conf 89998845662334332334444 No 41 >>1yxy_A Putative N-acetylmannosamine-6-phosphate 2- epimerase; structural genomics, PSI, protein structure initiative; 1.60A {Streptococcus pyogenes} (A:1-218) Probab=60.17 E-value=1.8 Score=22.82 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=37.6 Q ss_pred HHHHHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEE Q ss_conf 8876422234676641356-----75167899899989850770331002-54101899999985389836 Q gi|254780178|r 202 AERLKELDLKGYAIGGLAV-----GEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378) Q Consensus 202 a~~l~~~~~~G~aIgGl~~-----ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378) ++.+.+.++++..++|... +..... . .......+.+.|... -|+.+|.++..+.++|+|-. T Consensus 146 a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~-~---~~i~~~~~~~ipvia~GGI~~~~dv~~~l~~GAd~V 212 (218) T 1yxy_A 146 GLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-V---ALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGI 212 (218) T ss_dssp HHHHHHTTCSEEECTTTTSSTTSCCSSSCC-H---HHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEE T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCHHH-H---HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 999885299999981645877666741688-9---999887437982998589999999999998799999 No 42 >>1tb3_A Hydroxyacid oxidase 3; flavoprotein, oxidoreductase; HET: FMN; 2.30A {Rattus norvegicus} (A:) Probab=59.56 E-value=6.5 Score=19.11 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=47.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEEECCEEECC Q ss_conf 9887642223467664135675--1678998999898507703310025-4101899999985389836620000023 Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378) Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378) -++.+.+.++++..++|..-+- ......+++..+...+..+-|...- |+.++.+|+.+.++|.|..=..-|...+ T Consensus 230 ~a~~~~~~g~d~i~v~g~~g~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~g~dv~kALalGAd~V~iG~~fl~~ 307 (352) T 1tb3_A 230 DAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWG 307 (352) T ss_dssp HHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHH T ss_pred HHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH T ss_conf 699998862131012132100001464210014778750489756896167685778999998589989887799999 No 43 >>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* (A:) Probab=59.43 E-value=12 Score=17.39 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=84.7 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-----CCCC Q ss_conf 129999999873289779960121332------21158999999988999999988513588860554023-----4443 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLAL------PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQ-----GGDN 194 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~------~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVq-----GG~~ 194 (378) ...+.+++.....+.|.+..+--..+. ..+.+...+.+....+++++ . +-..++.+. .... T Consensus 96 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-------~-G~~v~~~~~~~~~~~~~~ 167 (337) T 3ble_A 96 VDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIK-------S-GLKINVYLEDWSNGFRNS 167 (337) T ss_dssp SSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHH-------T-TCEEEEEEETHHHHHHHC T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH-------C-CCEEEEEECCCCCCCCCC T ss_conf 54338899998659984520345322331121012088898888899999975-------4-975998631344443345 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECC Q ss_conf 668999988764222346766413567516789989998985077033-1002---541018999999853898366200 Q gi|254780178|r 195 INLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVM 270 (378) Q Consensus 195 ~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378) .+.-.+.++.+.+.+.+.+.|-.-.-...-++..+++..+...+|.-. =.|. +|. .....+.|+..|+|.+|++. T Consensus 168 ~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~Gl-A~An~laAl~aGa~~vd~s~ 246 (337) T 3ble_A 168 PDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDL-SVANSLQAIRAGVKGLHASI 246 (337) T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSC-HHHHHHHHHHTTCSEEEEBG T ss_pred CCHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHH-HHHHHHHHHHCCCCEEECCC T ss_conf 30245666778763123320363442231356679999999648995479860512567-77899999975972662244 Q ss_pred EEECCCCCCCC Q ss_conf 00023320024 Q gi|254780178|r 271 PTRAGRHGLAF 281 (378) Q Consensus 271 ptr~Ar~G~~~ 281 (378) --.-.|.|.+= T Consensus 247 ~G~G~r~Gn~~ 257 (337) T 3ble_A 247 NGLGERAGNTP 257 (337) T ss_dssp GGCSSTTCBCB T ss_pred CCCCCCCCCCH T ss_conf 55456767760 No 44 >>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=58.36 E-value=9.8 Score=17.91 Aligned_cols=125 Identities=8% Similarity=-0.091 Sum_probs=63.1 Q ss_pred EECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHH-HH Q ss_conf 71299999998732897799601213322115899999998899999998851358886055402344436689999-88 Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFS-AE 203 (378) Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~S-a~ 203 (378) ..+.+.+.+.-...|.|.+..-+-..+.+. +.+.++...+.+. -+-.++-.+...++++.. .. T Consensus 68 ~~~~~~~~~~l~~~G~~~v~l~~~~~~~~~---------~~~~~~~~~a~~~-------gl~~iv~v~~~~~~~~~~~~~ 131 (219) T 2h6r_A 68 SHTGHILAEAIKDCGCKGTLINHSEKRMLL---------ADIEAVINKCKNL-------GLETIVCTNNINTSKAVAALS 131 (219) T ss_dssp SCTTCCCHHHHHHHTCCEEEESBTTBCCBH---------HHHHHHHHHHHHH-------TCEEEEEESSSHHHHHHTTTC T ss_pred CCCCHHHHHHHHHHHHHHEEECCHHHHHHH---------CCHHHHHHHHHHC-------CCEEEEEECCHHHHHHHHHHC T ss_conf 730110089998865203111350122100---------2047999999987-------990588506234331444304 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHCCCHHHHEE-CCCCHHHHHHHHHHHCCCCEEE Q ss_conf 76422234676641356751678---9989998985077033100-2541018999999853898366 Q gi|254780178|r 204 RLKELDLKGYAIGGLAVGEPQEV---MLHILSNVLPILPVERPHY-LMGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 204 ~l~~~~~~G~aIgGl~~ge~~~~---~~~ii~~~~~~LP~~kPr~-l~G~G~P~~i~~~v~~GvDlFD 267 (378) .....-....++++- .+..... ....+..... ...+.|.. =.|+.+|.+.-.+..+|+|-+= T Consensus 132 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~-~~~~~~ii~ggGI~~~~~~~~~~~~gadgvl 197 (219) T 2h6r_A 132 PDCIAVEPPELIGTG-IPVSKANPEVVEGTVRAVKE-INKDVKVLCGAGISKGEDVKAALDLGAEGVL 197 (219) T ss_dssp CSEEEECCCC---------------CSHHHHHHHHH-HCTTCEEEECSSCCSHHHHHHHHTTTCCCEE T ss_pred CCEEEECCHHHHCCC-CCCCHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCHHHHHHHCCCCCEEE T ss_conf 625776572242068-78886678999999998775-2246023541444574489997346997799 No 45 >>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A (A:) Probab=58.25 E-value=12 Score=17.26 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=6.1 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 999998538983662 Q gi|254780178|r 254 DILKSVSYGVDMFDC 268 (378) Q Consensus 254 ~i~~~v~~GvDlFD~ 268 (378) .++....+|.|-+-| T Consensus 180 ~~~~~~~~G~~G~i~ 194 (288) T 2nuw_A 180 TLIYYSLLSLDGVVA 194 (288) T ss_dssp GGHHHHHTTSSEEEC T ss_pred CCCCHHHHCCCCCCC T ss_conf 433102101565533 No 46 >>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} (A:) Probab=57.92 E-value=12 Score=17.22 Aligned_cols=124 Identities=15% Similarity=0.027 Sum_probs=62.9 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 99999987328977996012133221158999999988999999988513588860554023444366899998876422 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL 208 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378) .+..+....-+.|++.....|.....-..... .|....... .......+.+ +....+. ++.+.+. T Consensus 80 ~~~~~~~~e~~~~~i~i~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~v~~---~v~~~~~----a~~a~~~ 144 (268) T 2htm_A 80 VRLARLGRLLTGERWVKLEVIPDPTYLLPDPL-------ETLKAAERL-IEEDFLVLPY---MGPDLVL----AKRLAAL 144 (268) T ss_dssp HHHHHHHHHHHCCSEEBCCCCSCTTTTCCCHH-------HHHHHHHHH-HHTTCEECCE---ECSCHHH----HHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH-------HHHHHHHHH-HCCCCEEEEE---CCCCHHH----HHHHHHC T ss_conf 99999999954997588773388345796576-------789999998-5099689862---7877899----9999864 Q ss_pred HHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEE Q ss_conf 23467664135675-1678998999898507703310025-41018999999853898366 Q gi|254780178|r 209 DLKGYAIGGLAVGE-PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 209 ~~~G~aIgGl~~ge-~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD 267 (378) +.++..+.|-.-+. ........+..+......+.|...- |+.++.++..++++|.|-.= T Consensus 145 Gad~i~v~g~~~~~~~g~~~~~~l~~~~~a~~~~ipVia~GGI~~~~dv~~al~lGAdaV~ 205 (268) T 2htm_A 145 GTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVL 205 (268) T ss_dssp TCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEE T ss_pred CCCEEEEHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEE T ss_conf 9837851044553054447988999999750688876864478987889999973888998 No 47 >>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} (A:513-842,A:963-1020) Probab=55.94 E-value=13 Score=17.01 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=59.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC---CCCHHHHHHHHHHHCCCCEEE Q ss_conf 44436689999887642223467664135675167899899989850770331002---541018999999853898366 Q gi|254780178|r 191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL---MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l---~G~G~P~~i~~~v~~GvDlFD 267 (378) +...++.-..-++.+.+.+.+.+.|.--.....-+...+++..+....+..-=.|. +|.+ ....+.|++.|+|.+| T Consensus 192 ~~~~~~~~~~~a~~l~~~G~~~i~i~Dt~G~~~P~~~~~Lv~~lk~~~~i~i~~H~Hnd~Gla-~An~laAi~aGad~VD 270 (388) T 2qf7_A 192 PKYDLKYYTNLAVELEKAGAHIIAVXDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIA-AATVLAAVEAGVDAVD 270 (388) T ss_dssp GGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCH-HHHHHHHHHTTCSEEE T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHHHHCCCCEEE T ss_conf 867889999999999975998898617766656166999999998454972899625653026-6899999976986665 Q ss_pred ECCEEECCCCCCCC Q ss_conf 20000023320024 Q gi|254780178|r 268 CVMPTRAGRHGLAF 281 (378) Q Consensus 268 ~~~ptr~Ar~G~~~ 281 (378) ++.--.-.|.|.+= T Consensus 271 ~si~GmG~~tGn~~ 284 (388) T 2qf7_A 271 AAMDALSGNTSQPC 284 (388) T ss_dssp EBCGGGCSBTSCCB T ss_pred ECCCCCCCCCCCCC T ss_conf 13444457888875 No 48 >>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, cytoplasm, schiff base, carbohydrate metabolism; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 1hl2_A 1fdy_A 1fdz_A 1nal_1 (A:1-218) Probab=55.66 E-value=14 Score=16.98 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=37.6 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 999999873289779960121332-2115899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLAL-PAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~-~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) ++.++++..-|.|-+..+---... .-+.++.++-++++. +.+ ...-..++|+ |+...+.-.+-+++..+ T Consensus 35 ~~~i~~~~~~G~~gi~~~G~tGE~~~Lt~~Er~~l~~~~~---~~~-----~~~~~vi~gv--~~~~t~~~i~~a~~a~~ 104 (218) T 2wkj_A 35 RRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVA---EEA-----KGKIKLIAHV--GCVSTAESQQLAASAKR 104 (218) T ss_dssp HHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHH---HHH-----TTTSEEEEEC--CCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---HHH-----HCCCCEEECC--CCCHHHHHHHHHHHHHH T ss_conf 9999999986999899775775421389999999999999---986-----3233111102--21102345677899997 Q ss_pred HHHHHHHHHC Q ss_conf 2234676641 Q gi|254780178|r 208 LDLKGYAIGG 217 (378) Q Consensus 208 ~~~~G~aIgG 217 (378) .++++..+.- T Consensus 105 ~Gad~vlv~p 114 (218) T 2wkj_A 105 YGFDAVSAVT 114 (218) T ss_dssp HTCSEEEEEC T ss_pred CCCCCCEECC T ss_conf 5996120148 No 49 >>1d3g_A Dihydroorotate dehydrogenase; protein-antiproliferative agent complex, oxidoreductase; HET: BRE FMN ORO DDQ; 1.60A {Homo sapiens} (A:) Probab=53.91 E-value=14 Score=16.79 Aligned_cols=135 Identities=12% Similarity=0.035 Sum_probs=75.1 Q ss_pred HHHHHCCCCEEEEEHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 998732897799601213322115-8999999988999999988513588860554023444366899998876422234 Q gi|254780178|r 133 HIQNLLGSDIQMQLDECLALPAED-KELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLK 211 (378) Q Consensus 133 ~~q~~lg~DI~~~LD~~~~~~~~~-k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~ 211 (378) ......+.|.......|++..... ........+.-....+..+.....-...++--+-.+...+....-++.+.+.+++ T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pv~vK~~~~~~~~~~~~~~~~~~~~G~~ 249 (367) T 1d3g_A 170 VRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGID 249 (367) T ss_dssp HHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCC T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 77764126403455322321112110122101357888887754301245776301357764302344467788766432 Q ss_pred HHHHHCCCCC-----CC--------------HHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 6766413567-----51--------------67899899989850770331002-541018999999853898366 Q gi|254780178|r 212 GYAIGGLAVG-----EP--------------QEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 212 G~aIgGl~~g-----e~--------------~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) |..+.|-... ++ .....+.+..+...+..+-|... =|+-++.|++.++++|+|..= T Consensus 250 ~i~v~~~~~~~~~~~~~~~~~~~~~~sg~~~~~~~~~~l~~i~~~~~~~~~Ii~~GGI~~~~Dv~k~l~~GAd~V~ 325 (367) T 1d3g_A 250 GLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367) T ss_dssp EEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEE T ss_pred HEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCHHH T ss_conf 1011333333346544421124553323013356588999999983899648998697999999999984997875 No 50 >>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} (A:) Probab=53.80 E-value=14 Score=16.78 Aligned_cols=172 Identities=12% Similarity=0.166 Sum_probs=72.6 Q ss_pred EECCCCCCCCCCCHHHHHHCCCCEEEEEHH--HHHHCCCHHHHHHCCCCHHHCCCC-CCEEECCCCCCCCHHHHCCCCCC Q ss_conf 410686856886889998609989993226--657387689986527420110157-72241145432101221022333 Q gi|254780178|r 34 MPVGTAGTVKAMYFDQVRDLGADVILGNAY--HLMLRPGAERIARLGGLHKFIRWF-KPILTDSGGFQVMSLSKLCSIDE 110 (378) Q Consensus 34 lpv~t~g~v~~lt~~~l~~~g~~~il~Nty--hl~~~pg~~~i~~~gGlh~fl~~~-~~ilTDSGgfQv~sl~~~~~~~~ 110 (378) -+....+---.+++.+|+++|++-++-+=- -.+.....+.|.+- +..-+... .|| +..|....-.+ T Consensus 68 ~~~~~Ga~TGeiS~~~Lkd~G~~~vliGHSERR~~f~Et~~~i~~K--v~~a~~~gl~pI---------vCvGE~~~~r~ 136 (257) T 2dp3_A 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKK--AKRALEKGMTVI---------FCVGETLDERK 136 (257) T ss_dssp CSSCSSSCTTCCCHHHHHHTTCCEEEECCHHHHHTSCCCHHHHHHH--HHHHHHTTCEEE---------EEECCCHHHHH T ss_pred CCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHH--HHHHHHCCCEEE---------EEECCCCCCCC T ss_conf 0003433101111777763165246642454433442008899999--999997599689---------99614444211 Q ss_pred CCEEEECCCCCCEEEECHHHHHHHHHHCCCC------EEEEE----HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 3102101445415871299999998732897------79960----1213322115899999998899999998851358 Q gi|254780178|r 111 QGVRFRSHIDGSLYRVSPEESVHIQNLLGSD------IQMQL----DECLALPAEDKELKRAMELSLRWAERSLVAFGNQ 180 (378) Q Consensus 111 ~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~D------I~~~L----D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~ 180 (378) .|.+ ..+--++.-.....++.| ++++- ..-++..++.+.+++...--.+++.++....... T Consensus 137 ~~~~---------~~~~~~Ql~~~l~~~~~~~~~~~~~iIAYEPvwAIGtg~~as~e~i~~v~~~Ir~~l~~~~~~~~~~ 207 (257) T 2dp3_A 137 ANRT---------MEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQ 207 (257) T ss_dssp TTCH---------HHHHHHHHHHHHHHHTTCGGGGGGEEEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHH T ss_pred CCHH---------HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 1015---------7899988874440023210255647999655001355544561333335789999999887775538 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 886055402344436689999887642223467664135675167899899989 Q gi|254780178|r 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNV 234 (378) Q Consensus 181 ~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~ 234 (378) .-..|+| |+...+-- .+.+...++||+.|||.++..+ +.+++..+ T Consensus 208 ~v~ILYG---GSV~~~n~---~~l~~~~~vDG~LvG~asl~~e---f~~ii~~~ 252 (257) T 2dp3_A 208 HIRIIYG---GSANGSNC---EKLGQCPNIDGFLVGGASLKPE---FMTMIDIL 252 (257) T ss_dssp HSEEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGGSTH---HHHHHHHH T ss_pred CCCEEEC---CCCCHHHH---HHHHCCCCCCEEEEEHHHCCHH---HHHHHHHH T ss_conf 6548960---88898999---9985788999799510546966---89999999 No 51 >>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} (A:) Probab=53.61 E-value=10 Score=17.72 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=39.2 Q ss_pred HHHHHHHHHHHHHHHCCCCCC--CHH-------HHHHHHHHHHHCCC-------HHHHEEC-CCCHHHHHHHHHHHCCCC Q ss_conf 887642223467664135675--167-------89989998985077-------0331002-541018999999853898 Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVGE--PQE-------VMLHILSNVLPILP-------VERPHYL-MGVGTPDDILKSVSYGVD 264 (378) Q Consensus 202 a~~l~~~~~~G~aIgGl~~ge--~~~-------~~~~ii~~~~~~LP-------~~kPr~l-~G~G~P~~i~~~v~~GvD 264 (378) +..+.+.++++..+++ +.|- +.. -....+..+...|| .+-|... =|+-++.||+.|+++|.| T Consensus 298 a~~a~~~g~d~I~v~~-~gg~~~~~~~~~~~g~p~~~~~~~~~~~l~~~~~~~~~~v~ii~dGGir~g~Dv~KAlalGAd 376 (503) T 1me8_A 298 FRYLADAGADFIKIGI-GGGSIXITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGAD 376 (503) T ss_dssp HHHHHHHTCSEEEECS-SCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCS T ss_pred HHHHHHHCCCEEEEEC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHCCC T ss_conf 9999983888689841-578645440104358845889999999997751112688853425674643079999870898 Q ss_pred EEEECCEEECC Q ss_conf 36620000023 Q gi|254780178|r 265 MFDCVMPTRAG 275 (378) Q Consensus 265 lFD~~~ptr~A 275 (378) ..=.--|...| T Consensus 377 ~v~~Gr~~~~~ 387 (503) T 1me8_A 377 FIMLGRYFARF 387 (503) T ss_dssp EEEESHHHHTB T ss_pred EEEECCHHCCC T ss_conf 89765011553 No 52 >>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} (A:) Probab=52.93 E-value=15 Score=16.69 Aligned_cols=126 Identities=11% Similarity=-0.091 Sum_probs=78.9 Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC----CCHHHHHHHH Q ss_conf 299999998732897799601213322115899999998899999998851358886055402344----4366899998 Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG----DNINLRSFSA 202 (378) Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG----~~~dLR~~Sa 202 (378) .-+++++....+|-+-+|.=.--.|.+. +.|.+..+.+...--.. ..-+|.+.|+ .......+.+ T Consensus 86 ~~~~~i~~a~~~Gf~sVmiD~S~l~~~e---------nit~~~v~~a~~~g~~v--E~ElG~~~g~e~~~~~~t~~~~a~ 154 (251) T 1qwg_A 86 KFDEFLNECEKLGFEAVEISDGSSDISL---------EERNNAIKRAKDNGFMV--LTEVGKKMPDKDKQLTIDDRIKLI 154 (251) T ss_dssp CHHHHHHHHHHHTCCEEEECCSSSCCCH---------HHHHHHHHHHHHTTCEE--EEEECCSSHHHHTTCCHHHHHHHH T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCCH---------HHHHHHHHHHHHCCCEE--EECCCCCCCCCCCCCCHHHHHHHH T ss_conf 6999999999859988997598567898---------99999999998589989--514557888866555999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCC-------CHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCE Q ss_conf 87642223467664135675-------1678998999898507703310025410189999998538983 Q gi|254780178|r 203 ERLKELDLKGYAIGGLAVGE-------PQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDM 265 (378) Q Consensus 203 ~~l~~~~~~G~aIgGl~~ge-------~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDl 265 (378) +...+.+.+..+|...++|. ......+++..+...+|. |..++|...+.++..++..|+-= T Consensus 155 ~f~~~tg~d~l~i~A~~~Gt~HG~y~~~~~l~~~~l~~I~~~~~~--plVlHGaSg~~~~~~~i~~g~~K 222 (251) T 1qwg_A 155 NFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDI--NKVIFEAPQKSQQVAFILKFGSS 222 (251) T ss_dssp HHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCG--GGEEEECCSHHHHHHHHHHHCTT T ss_pred HHHHHCCCCEEEEEHHHCCCCCCEECCCCCHHHHHHHHHHHHCCC--CCEEEECCCHHHHHHHHHHHCCC T ss_conf 999966885899840211776122468877018899999984892--02799789856899999997989 No 53 >>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} (A:1-245) Probab=52.77 E-value=15 Score=16.68 Aligned_cols=18 Identities=11% Similarity=-0.182 Sum_probs=7.5 Q ss_pred HHHHHHHHHCCCCEEEEE Q ss_conf 999999873289779960 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQL 146 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~L 146 (378) +..++++..-|.+-++.+ T Consensus 28 ~~~i~~l~~~Gv~gi~~~ 45 (245) T 3eb2_A 28 GRLCDDLIQAGVHGLTPL 45 (245) T ss_dssp HHHHHHHHHTTCSCBBTT T ss_pred HHHHHHHHHCCCCEEEEE T ss_conf 999999997699989985 No 54 >>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} (A:) Probab=52.61 E-value=15 Score=16.66 Aligned_cols=79 Identities=9% Similarity=0.000 Sum_probs=34.3 Q ss_pred HHHHHHH-HHCCCCEEEEEHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHH Q ss_conf 9999998-7328977996012133-2211589999999889999999885135888605540234443668999988764 Q gi|254780178|r 129 EESVHIQ-NLLGSDIQMQLDECLA-LPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLK 206 (378) Q Consensus 129 e~~i~~q-~~lg~DI~~~LD~~~~-~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~ 206 (378) .+.++++ ++.|.|-++.+--.-. +.-+.++.++-++++. + +- ..+-..+.|+ |+...+.-.+-+++.. T Consensus 27 ~~~i~~li~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~v---~----~~-~~~~pvi~gv--~~~~~~~~i~~a~~a~ 96 (293) T 1f6k_A 27 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAK---D----EA-KDQIALIAQV--GSVNLKEAVELGKYAT 96 (293) T ss_dssp HHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHH---H----HH-TTSSEEEEEC--CCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHH---H----HH-CCCCEEEEEC--CCCCHHHHHHHHHHHH T ss_conf 99999999828999899783276643479999999999999---9----83-8987399966--8788999999999999 Q ss_pred HHHHHHHHHHC Q ss_conf 22234676641 Q gi|254780178|r 207 ELDLKGYAIGG 217 (378) Q Consensus 207 ~~~~~G~aIgG 217 (378) +.+.++..+.- T Consensus 97 ~~Ga~~v~i~~ 107 (293) T 1f6k_A 97 ELGYDCLSAVT 107 (293) T ss_dssp HHTCSEEEEEC T ss_pred HCCCCEEEECC T ss_conf 65999999788 No 55 >>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} (A:110-162) Probab=50.13 E-value=12 Score=17.25 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=25.9 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 54023444366899998876422234676641 Q gi|254780178|r 186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGG 217 (378) Q Consensus 186 fgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG 217 (378) ||- ||..++-.|+++++-++...|+|-.|-. T Consensus 15 Fge-~gp~DL~QRrkaadllarrgFdg~siRa 45 (53) T 3dfg_A 15 FGE-DGPVDLAQRRKAADLLARRGFDGNSIRL 45 (53) T ss_dssp HCT-TCCCSHHHHHHHHHHHHHTTCCHHHHHH T ss_pred CCC-CCCCCHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 389-9999999999999999987999999999 No 56 >>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} (A:25-247) Probab=49.06 E-value=17 Score=16.30 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=61.0 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 12999999987328977996012133221158999999988999999988513588860554023444366899998876 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL 205 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l 205 (378) +.+..-++.....+.|.+.......+... .. .+.+++ .......+.++ ...+.. ... T Consensus 88 i~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~-------~~~~~~----~~~g~~v~~~~----~~~~~a----~~a 144 (223) T 1a53_A 88 IVKESQIDDAYNLGADTVLLIVKILTERE----LE-------SLLEYA----RSYGMEPLIEI----NDENDL----DIA 144 (223) T ss_dssp CCSHHHHHHHHHHTCSEEEEEGGGSCHHH----HH-------HHHHHH----HTTTCCCEEEE----CSHHHH----HHH T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHCCHHH----HH-------HHHHHH----HHHHHHHHHHC----CCHHHH----HHH T ss_conf 06767999998615455567686300788----89-------999999----99864677725----899999----999 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 42223467664135675167899899989850770331002-541018999999853898366 Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) .+.+.+++.+++..... .....+...........+.|.+. -|+.+|.++..+.++|.|-+= T Consensus 145 ~~~g~d~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~vpvia~GGI~~~~dv~~al~~GAdgV~ 206 (223) T 1a53_A 145 LRIGARFIGINSRDLET-LEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFL 206 (223) T ss_dssp HHTTCSEEEEESBCTTT-CCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEE T ss_pred HHCCCCEEEEECCCHHH-HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEE T ss_conf 81685705452467676-554356899998528889869996389999999999977999999 No 57 >>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} (A:) Probab=47.80 E-value=18 Score=16.17 Aligned_cols=128 Identities=9% Similarity=-0.115 Sum_probs=68.5 Q ss_pred HHHHHHHHHCCCCEEEEEHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHH Q ss_conf 99999987328977996012133221-15899999998899999998851358886055402344436689999887642 Q gi|254780178|r 129 EESVHIQNLLGSDIQMQLDECLALPA-EDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKE 207 (378) Q Consensus 129 e~~i~~q~~lg~DI~~~LD~~~~~~~-~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~ 207 (378) ..........+.|.+..-..++.... +......-+....+|.. .. ....-++-|-...+--.+-++...+ T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ii~k~~~~~~~i~~~a~~a~~ 144 (220) T 1ub3_A 74 ALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVP-------QA--VLKVILETGYFSPEEIARLAEAAIR 144 (220) T ss_dssp HHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHST-------TS--EEEEECCGGGSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHCCCHHHHHHHHHHHHHHCC-------CC--CEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 99999999808987999743414334788999999999997447-------87--3577750252889999999999987 Q ss_pred HHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 223467664135675--167899899989850770331002-54101899999985389836620 Q gi|254780178|r 208 LDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 208 ~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) .+.+|..+++-.-+. +.+.+. .+.+....+.|... =|+-++.|++.++++|.|..=-- T Consensus 145 ~G~dgi~~~~~~~~~~~~~~~l~----~~~~~~~~~i~Ii~~GGIrtg~Dv~k~l~lGAd~V~ig 205 (220) T 1ub3_A 145 GGADFLKTSTGFGPRGASLEDVA----LLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTS 205 (220) T ss_dssp HTCSEEECCCSSSSCCCCHHHHH----HHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEET T ss_pred HHHHHEECCCCCCCCCCCHHHHH----HHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 40655233677688887569999----99998667853978389799999999999751771027 No 58 >>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} (A:95-486) Probab=47.26 E-value=18 Score=16.11 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=46.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHCCC-----HHHHEEC-CCCHHHHHHHHHHHCCCCEEEECC Q ss_conf 9998876422234676641356751--6789989998985077-----0331002-541018999999853898366200 Q gi|254780178|r 199 SFSAERLKELDLKGYAIGGLAVGEP--QEVMLHILSNVLPILP-----VERPHYL-MGVGTPDDILKSVSYGVDMFDCVM 270 (378) Q Consensus 199 ~~Sa~~l~~~~~~G~aIgGl~~ge~--~~~~~~ii~~~~~~LP-----~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ 270 (378) .+.|+.+.+.+++|..++|-..+.- .......+..+...+. .+.|... =|+.++.+|+.+.++|.|..=... T Consensus 260 ~~~A~~~~~~G~d~i~v~g~gg~~~~~~~~~~~~lp~v~~~l~~~~~~~~ipiia~GGI~~g~dv~kALaLGAd~V~iG~ 339 (392) T 1kbi_A 260 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGR 339 (392) T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECH T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEHH T ss_conf 89899998548874465044212246675547679999999986621898079997998977999999982888511519 Q ss_pred EEECC Q ss_conf 00023 Q gi|254780178|r 271 PTRAG 275 (378) Q Consensus 271 ptr~A 275 (378) +...+ T Consensus 340 ~fl~~ 344 (392) T 1kbi_A 340 PFLYA 344 (392) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 59 >>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* (A:1-197,A:284-332) Probab=46.73 E-value=15 Score=16.60 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECCC Q ss_conf 99887642223467664135675--167899899989850770331002-541018999999853898366200000233 Q gi|254780178|r 200 FSAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 200 ~Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) ..++.+.+.+.++..+.|...+. ......+.+..+... .+.|... -|++++.++..+.++|.|-.=.-.|...+. T Consensus 121 ~~A~~~~~aGad~I~v~G~~~~~~~~~~~~~~~I~ei~~~--~~iPVIa~GGI~t~~Da~kalalGADaV~VGta~l~a~ 198 (246) T 2z6i_A 121 ALAKRXEKIGADAVIAEGXEAGGHIGKLTTXTLVRQVATA--ISIPVIAAGGIADGEGAAAGFXLGAEAVQVGTRFVVAQ 198 (246) T ss_dssp HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHH--CSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBG T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHC--EEEEEEEECCCCCCCCHHHHHHCCCCEEEECCEEEECC T ss_conf 9998888736887885177767662114431002020101--20017876333365258999863753135576035420 No 60 >>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative; 2.30A {Brucella melitensis 16M} (A:) Probab=46.26 E-value=19 Score=16.01 Aligned_cols=147 Identities=16% Similarity=0.073 Sum_probs=85.3 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE--EEE-ECCCCCCHH Q ss_conf 129999999873289779960121332------21158999999988999999988513588860--554-023444366 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLAL------PAEDKELKRAMELSLRWAERSLVAFGNQPGKA--LFG-IVQGGDNIN 196 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~------~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~--lfg-iVqGG~~~d 196 (378) -.....++.....+.+....+--..+. ..+.....+.+....+++++ .-.+..-.. -+. +..+...++ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~---~G~~v~~~~~~~~~~~~~~~~~~~ 155 (295) T 1ydn_A 79 VPNXKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAIN---DGLAIRGYVSCVVECPYDGPVTPQ 155 (295) T ss_dssp CSSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSEETTTEECCHH T ss_pred HHCCCCHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCEEEECCCCCCCHHHHHH T ss_conf 53132011101356408875201468999888510576656665477888764---023443113310256420013344 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECCEE Q ss_conf 8999988764222346766413567516789989998985077033-1002---54101899999985389836620000 Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVMPT 272 (378) Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378) ...+.++.+.+.+.+.+.|---.-...-++..+++..+...+|.-. =.|. +|. -....+.++..|+|.+|++..- T Consensus 156 ~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~p~~~i~~H~Hnd~Gl-a~An~laAi~aGa~~id~s~~G 234 (295) T 1ydn_A 156 AVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAXLDAVLAIAPAHSLAGHYHDTGGR-ALDNIRVSLEKGLRVFDASVGG 234 (295) T ss_dssp HHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSC-HHHHHHHHHHHTCCEEEEBTTC T ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHHHHHHHHHCCCCEEEEECCC T ss_conf 679998877744853896165003331688999999864048840566225888762-6775999986277789876137 Q ss_pred ECCC Q ss_conf 0233 Q gi|254780178|r 273 RAGR 276 (378) Q Consensus 273 r~Ar 276 (378) .-.| T Consensus 235 ~Ger 238 (295) T 1ydn_A 235 LGGC 238 (295) T ss_dssp CSCB T ss_pred CCCC T ss_conf 7899 No 61 >>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* (A:56-415) Probab=45.26 E-value=20 Score=15.91 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=73.5 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCH-----HHHHHHHHHHHHHHH----------HHHHHHCCCCCCE-EEEEC Q ss_conf 1299999998732897799601213322115-----899999998899999----------9988513588860-55402 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAED-----KELKRAMELSLRWAE----------RSLVAFGNQPGKA-LFGIV 189 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~-----k~~~~sv~rT~~w~~----------~~~~~~~~~~~~~-lfgiV 189 (378) .............+.|.+..--.|+.....+ ....+-......+-. +.++..+...... +..+. T Consensus 143 ~~~~~~~~~~~~~~~~~i~~n~~cp~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vK~~ 222 (360) T 3i65_A 143 VDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLA 222 (360) T ss_dssp HHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEEC T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEC T ss_conf 99999999875013770012056876555423456778999999999999976530121000000012356785799859 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----------------CHHHHHHHHHHHHHCCCHHHHEECC-CCHH Q ss_conf 344436689999887642223467664135675-----------------1678998999898507703310025-4101 Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGE-----------------PQEVMLHILSNVLPILPVERPHYLM-GVGT 251 (378) Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge-----------------~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~ 251 (378) .|.. .+.-..-++.+.+.+.++..+.+-.... ....-.+.+..+.+.+..+-|...- |+-+ T Consensus 223 ~~~d-~~~~~~~~~~~~~~Gvd~i~v~~~~~~~~~~~~~~~~~~g~~g~~~~~~~l~~i~~~~~~~~~~i~ii~~GGI~~ 301 (360) T 3i65_A 223 PDLN-QEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFS 301 (360) T ss_dssp SCCC-HHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCS T ss_pred CCCC-HHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 9987-668999999999706566132035334555433244568657762778999999999998289983999789899 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 89999998538983662 Q gi|254780178|r 252 PDDILKSVSYGVDMFDC 268 (378) Q Consensus 252 P~~i~~~v~~GvDlFD~ 268 (378) +.++..++++|.|..-. T Consensus 302 ~~da~~~l~~GAd~V~i 318 (360) T 3i65_A 302 GLDALEKIEAGASVCQL 318 (360) T ss_dssp HHHHHHHHHHTEEEEEE T ss_pred HHHHHHHHHCCCCHHHH T ss_conf 99999999849879987 No 62 >>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; 2.71A {Bacillus subtilis subsp} (A:) Probab=45.18 E-value=20 Score=15.90 Aligned_cols=148 Identities=12% Similarity=0.114 Sum_probs=86.6 Q ss_pred CHHHHHHHHHHCCCCEEEEEHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CCC--EEEEECC-CCCCHH Q ss_conf 2999999987328977996012133------22115899999998899999998851358-886--0554023-444366 Q gi|254780178|r 127 SPEESVHIQNLLGSDIQMQLDECLA------LPAEDKELKRAMELSLRWAERSLVAFGNQ-PGK--ALFGIVQ-GGDNIN 196 (378) Q Consensus 127 tpe~~i~~q~~lg~DI~~~LD~~~~------~~~~~k~~~~sv~rT~~w~~~~~~~~~~~-~~~--~lfgiVq-GG~~~d 196 (378) .....++.-...+.|.+..+..+.+ ...+.+...+.+..+.+|+... .-. .-+ ..|+..- +-..++ T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----G~~v~~~l~~~~~~~d~~~~~~~ 157 (307) T 1ydo_A 82 PNQRGLENALEGGINEACVFXSASETHNRKNINKSTSESLHILKQVNNDAQKA----NLTTRAYLSTVFGCPYEKDVPIE 157 (307) T ss_dssp CSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT----TCEEEEEEECTTCBTTTBCCCHH T ss_pred CCCHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC----CCCEEEEEEECCCCCCCCCCHHH T ss_conf 02327998630444358887301265545431054898776677777654032----10001233220466523221067 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH-HEEC---CCCHHHHHHHHHHHCCCCEEEECCEE Q ss_conf 8999988764222346766413567516789989998985077033-1002---54101899999985389836620000 Q gi|254780178|r 197 LRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVER-PHYL---MGVGTPDDILKSVSYGVDMFDCVMPT 272 (378) Q Consensus 197 LR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~k-Pr~l---~G~G~P~~i~~~v~~GvDlFD~~~pt 272 (378) .-.+.++.+.+.+.+.+.+.--.....-++..+++..+...+|.-. =.|. +|. -....+.++..|+|.+|++.-- T Consensus 158 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~p~~~i~~H~Hn~~Gl-a~An~laAi~aGa~~id~s~~G 236 (307) T 1ydo_A 158 QVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGT-ALANXVTALQXGITVFDGSAGG 236 (307) T ss_dssp HHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSC-HHHHHHHHHHHTCCEEEEBGGG T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCC-HHHHHHHHHHCCCEECCCCCCC T ss_conf 889999999863980785146556788078788898776307863221430678640-9999984754075152556658 Q ss_pred ECCCCCC Q ss_conf 0233200 Q gi|254780178|r 273 RAGRHGL 279 (378) Q Consensus 273 r~Ar~G~ 279 (378) .-.|.|. T Consensus 237 lG~~~g~ 243 (307) T 1ydo_A 237 LGGCPYA 243 (307) T ss_dssp CCEETTE T ss_pred CCCCCCC T ss_conf 8778787 No 63 >>1o0y_A Deoxyribose-phosphate aldolase; TM1559, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} (A:) Probab=44.26 E-value=20 Score=15.81 Aligned_cols=127 Identities=13% Similarity=-0.041 Sum_probs=65.8 Q ss_pred HHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHH Q ss_conf 999998732897799601213322115899999998899999998851358886055402344-4366899998876422 Q gi|254780178|r 130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG-DNINLRSFSAERLKEL 208 (378) Q Consensus 130 ~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG-~~~dLR~~Sa~~l~~~ 208 (378) ........-+.|....-..+........ .....|+.+..+..+.. .--.++-+| ...+--...++...+. T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~ii~k~~~~~~~~~~~~~~~~~a 185 (260) T 1o0y_A 115 HEAIFAVESGADEIDMVINVGMLKAKEW------EYVYEDIRSVVESVKGK---VVKVIIETCYLDTEEKIAACVISKLA 185 (260) T ss_dssp HHHHHHHHHTCSEEEEECCHHHHHTTCH------HHHHHHHHHHHHHTTTS---EEEEECCGGGCCHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCEEEEEECCCHHHCCCH------HHHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 9999999859987999731253226788------99999999999972523---22133300025819999999999976 Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCCCCEEE Q ss_conf 234676641356751678998999898507703310025-41018999999853898366 Q gi|254780178|r 209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~GvDlFD 267 (378) +.+|..++|-.-+. ....+.+..+.+.+..+-|...- |+.++.|++.++++|.|..= T Consensus 186 ga~~i~~~~~~~~~--~~~~~~l~~~~~~~~~~ipIia~GGI~tg~Dv~kalalGAd~V~ 243 (260) T 1o0y_A 186 GAHFVKTSTGFGTG--GATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIG 243 (260) T ss_dssp TCSEEECCCSSSSC--CCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE T ss_pred CCCEEECCCCCCCC--CCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHC T ss_conf 98868737888888--85789999999986768768787798999999999998518747 No 64 >>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} (A:) Probab=43.94 E-value=20 Score=15.78 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=74.1 Q ss_pred HHHCCCCEEEEEHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCC-CCCCEEE-EECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 87328977996012133221158-9999999889999999885135-8886055-4023444366899998876422234 Q gi|254780178|r 135 QNLLGSDIQMQLDECLALPAEDK-ELKRAMELSLRWAERSLVAFGN-QPGKALF-GIVQGGDNINLRSFSAERLKELDLK 211 (378) Q Consensus 135 q~~lg~DI~~~LD~~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~-~~~~~lf-giVqGG~~~dLR~~Sa~~l~~~~~~ 211 (378) ....++|.+..=-.|++....++ .-..+.+...+++.+.++...+ ....... ..+.+....+.-...++.+.+.+.+ T Consensus 161 ~~~~ga~~~~l~~~~~~~~~~~~~~~g~~l~~~~~~~~~ii~~vr~~~~~~~~vk~~~~~~~~~~~~~~~a~~l~~~G~~ 240 (336) T 1f76_A 161 KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAXHHKYVPIAVKIAPDLSEEELIQVADSLVRHNID 240 (336) T ss_dssp HHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCS T ss_pred HHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 53325785454478988756567742577776589999999999975287631899954899989999999999966998 Q ss_pred HHHHHCCCC-------------------CCCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCE Q ss_conf 676641356-------------------75167899899989850770331002-5410189999998538983662000 Q gi|254780178|r 212 GYAIGGLAV-------------------GEPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMP 271 (378) Q Consensus 212 G~aIgGl~~-------------------ge~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378) ++.+.+-.. -.........+..+......+-|... =|+.++.++..++++|+|+.-..-+ T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ipvi~~GGI~~~~da~k~l~~GAD~V~igra 320 (336) T 1f76_A 241 GVIATNTTLDRSLVQGXKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSG 320 (336) T ss_dssp EEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHH T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHH T ss_conf 89999267521133464212345765663236999999999999828995799989999999999999809999997878 No 65 >>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} (A:) Probab=43.82 E-value=21 Score=15.77 Aligned_cols=77 Identities=10% Similarity=0.146 Sum_probs=37.5 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH Q ss_conf 13322115899999998899999998851358886055402344436689999887642223467664135675167899 Q gi|254780178|r 149 CLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVML 228 (378) Q Consensus 149 ~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~ 228 (378) -++..++.+.+++...--.+|+.+.........-..|+| |+..++.- .+.+...++||+.|||.++ ..+.+. T Consensus 172 Gtg~~as~e~i~~~~~~Ir~~l~~~~~~~~~~~v~IlYG---GSV~~~n~---~~l~~~~~vDG~LvG~asl--~~~~f~ 243 (252) T 2btm_A 172 GTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYG---GSVKPDNI---RDFLAQQQIDGALVGGASL--EPASFL 243 (252) T ss_dssp TTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGS--SHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEC---CCCCHHHH---HHHHCCCCCCEEEECHHHC--CHHHHH T ss_conf 555678826665567889988875316334066858751---89798799---9996688998799425767--989999 Q ss_pred HHHHH Q ss_conf 89998 Q gi|254780178|r 229 HILSN 233 (378) Q Consensus 229 ~ii~~ 233 (378) +++.. T Consensus 244 ~Ii~~ 248 (252) T 2btm_A 244 QLVEA 248 (252) T ss_dssp HHHHT T ss_pred HHHHH T ss_conf 99998 No 66 >>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (A:565-727) Probab=43.49 E-value=20 Score=15.83 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=18.0 Q ss_pred EECHHHHHHHHHHCCCCEEEE Q ss_conf 712999999987328977996 Q gi|254780178|r 125 RVSPEESVHIQNLLGSDIQMQ 145 (378) Q Consensus 125 ~ltpe~~i~~q~~lg~DI~~~ 145 (378) ..++|+.++....-+||++.. T Consensus 69 ~~~~e~~~~~~~~~~~d~V~i 89 (163) T 1req_A 69 FQTPEETARQAVEADVHVVGV 89 (163) T ss_dssp TBCHHHHHHHHHHTTCSEEEE T ss_pred CCCHHHHHHHHHHCCCCEEEE T ss_conf 899999999999769999999 No 67 >>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} (A:1-213) Probab=41.63 E-value=6.7 Score=19.04 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.9 Q ss_pred HHHEEC-CCCHHHHHHHHHHHCCCCEE Q ss_conf 331002-54101899999985389836 Q gi|254780178|r 241 ERPHYL-MGVGTPDDILKSVSYGVDMF 266 (378) Q Consensus 241 ~kPr~l-~G~G~P~~i~~~v~~GvDlF 266 (378) +.|... -|+++|.++..++++|+|-+ T Consensus 181 ~ipvia~GGI~t~~d~~~~l~~GAd~V 207 (213) T 3igs_A 181 GCRVIAEGRYNSPALAAEAIRYGAWAV 207 (213) T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEE T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEE T ss_conf 881998689899999999998699999 No 68 >>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} (A:1-212,A:291-326) Probab=40.83 E-value=23 Score=15.47 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEECCEEECCC Q ss_conf 99887642223467664135675--167899899989850770331002-541018999999853898366200000233 Q gi|254780178|r 200 FSAERLKELDLKGYAIGGLAVGE--PQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 200 ~Sa~~l~~~~~~G~aIgGl~~ge--~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) ..++.+.+.+.++..++|...+. ....-.+.+..+.. ..+.|... =|++++.++..++++|.|..=.-.|...+. T Consensus 135 ~~A~~l~~aGad~i~v~g~~~~~~~~~~~~~~~l~~v~~--~~~iPVia~GGI~t~~Di~kala~GAdaV~iGsa~l~a~ 212 (248) T 3bo9_A 135 SLARXVERAGADAVIAEGXESGGHIGEVTTFVLVNKVSR--SVNIPVIAAGGIADGRGXAAAFALGAEAVQXGTRFVASV 212 (248) T ss_dssp HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHH--HCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBS T ss_pred HHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHH--HCCCCEEEECCCCCHHHHHHHHHCCCCCEEECCEEEECC T ss_conf 999989984178200246666556666666888788987--548655763365777899999852963003666067436 Q ss_pred CC Q ss_conf 20 Q gi|254780178|r 277 HG 278 (378) Q Consensus 277 ~G 278 (378) +. T Consensus 213 ~~ 214 (248) T 3bo9_A 213 QS 214 (248) T ss_dssp GG T ss_pred HH T ss_conf 02 No 69 >>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} (A:) Probab=40.28 E-value=23 Score=15.41 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=37.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 33221158999999988999999988513588860554023444366899998876422234676641356751678998 Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH 229 (378) Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ 229 (378) ++..++.+.+++...--.+++.+.........-..|+| |+..++--. +.+...++||+.|||.++ +.+.+.+ T Consensus 173 tg~~as~~~i~~~~~~Ir~~l~~~~~~~~a~~i~IlYG---GSV~~~n~~---~l~~~~~iDG~LvG~asl--~~~~f~~ 244 (250) T 1yya_A 173 TGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYG---GSVNPKNFA---DLLSMPNVDGGLVGGASL--ELESFLA 244 (250) T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEE---SSCCTTTHH---HHHTSTTCCEEEESGGGS--SHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC---CCCCHHHHH---HHHCCCCCCEEEECHHHC--CHHHHHH T ss_conf 78777706677778899999997612645377748972---788987999---984778988689425657--9899999 Q ss_pred HHHHH Q ss_conf 99989 Q gi|254780178|r 230 ILSNV 234 (378) Q Consensus 230 ii~~~ 234 (378) ++..+ T Consensus 245 ii~~v 249 (250) T 1yya_A 245 LLRIA 249 (250) T ss_dssp HHHHH T ss_pred HHHHC T ss_conf 99964 No 70 >>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} (A:) Probab=40.21 E-value=17 Score=16.37 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=35.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 33221158999999988999999988513588860554023444366899998876422234676641356751678998 Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH 229 (378) Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ 229 (378) ++..++.+.+++...--.+|+.+.........-..|+| |+...+- +.+.+...++||+.|||.++. .++.+ T Consensus 175 tg~~as~~~i~~v~~~Ir~~~~~~~~~~~~~~v~ilYG---GSV~~~N---~~~l~~~~~vDG~LvG~asl~---~~f~~ 245 (255) T 1b9b_A 175 TGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYG---GSIKPDN---FLGLIVQKDIDGGLVGGASLK---ESFIE 245 (255) T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEE---SSCCHHH---HTTTSSSTTCCEEEESGGGTS---THHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC---CCCCHHH---HHHHHCCCCCCEEEECCHHCC---HHHHH T ss_conf 66676557777777888888887517000476428972---8989889---999956779997996013188---78999 Q ss_pred HHHHHHH Q ss_conf 9998985 Q gi|254780178|r 230 ILSNVLP 236 (378) Q Consensus 230 ii~~~~~ 236 (378) +++.... T Consensus 246 ii~~~~~ 252 (255) T 1b9b_A 246 LARIMRG 252 (255) T ss_dssp HHHHHTC T ss_pred HHHHHHH T ss_conf 9999997 No 71 >>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A (A:1-397) Probab=39.46 E-value=24 Score=15.33 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=14.7 Q ss_pred HHHHHHHCCCCEEEECCEEECCC Q ss_conf 99999853898366200000233 Q gi|254780178|r 254 DILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 254 ~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) -+-.+++.|+...=|+|+.-... T Consensus 246 pF~~~~~ag~~~vM~~y~~~~~~ 268 (397) T 3f94_A 246 GYFSAINQGVQSVMASFNSWNGK 268 (397) T ss_dssp HHHHHHHTTCSEEEECSSEETTE T ss_pred HHHHHHHCCCCCCCCCCCCCCCC T ss_conf 16666302653211022456997 No 72 >>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} (A:) Probab=39.31 E-value=24 Score=15.31 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=8.0 Q ss_pred HHHHHHHHHHHCCCCEEEE Q ss_conf 0189999998538983662 Q gi|254780178|r 250 GTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 250 G~P~~i~~~v~~GvDlFD~ 268 (378) |.-..++.+..+|.|-+-| T Consensus 178 g~d~~~~~~l~~G~~G~i~ 196 (293) T 1w3i_A 178 GSDMLIATVASTGLDGNVA 196 (293) T ss_dssp CCSTTHHHHHHTTCCEEEC T ss_pred CCCHHHHHHHCCCCCEEEE T ss_conf 4310122332157760120 No 73 >>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} (A:1-68) Probab=39.21 E-value=12 Score=17.32 Aligned_cols=26 Identities=31% Similarity=0.558 Sum_probs=21.4 Q ss_pred HHHHCCCCHHHCCCCCCEEECCCCCC Q ss_conf 98652742011015772241145432 Q gi|254780178|r 73 RIARLGGLHKFIRWFKPILTDSGGFQ 98 (378) Q Consensus 73 ~i~~~gGlh~fl~~~~~ilTDSGgfQ 98 (378) +.+++..|..=+.|+.|+.||-|.|= T Consensus 28 i~~~FP~L~~~i~WNqPmFTdhGTfI 53 (68) T 2i8d_A 28 XQAQFPQLKLEFKWNQPXFTDHGTFI 53 (68) T ss_dssp HHHHCTTCEEEEETTEEEEEETTEEE T ss_pred HHHHCCCCHHEEEECCCEEEECCEEE T ss_conf 99978872204671786299889579 No 74 >>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} (A:) Probab=38.69 E-value=25 Score=15.25 Aligned_cols=20 Identities=15% Similarity=0.066 Sum_probs=9.9 Q ss_pred ECHHHHHHHHHHCCCCEEEE Q ss_conf 12999999987328977996 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQ 145 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~ 145 (378) +|-|-+.+..+.+|.+.++. T Consensus 101 yTGEvS~~mL~d~G~~~vii 120 (283) T 3gvg_A 101 YTGDVSGAFLAKLGCSYVVV 120 (283) T ss_dssp CTTCCCHHHHHHTTCCEEEE T ss_pred CHHHHHHHHHHHHHHHHHHH T ss_conf 20030199998651014432 No 75 >>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa} (A:) Probab=38.27 E-value=20 Score=15.84 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=32.6 Q ss_pred CCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 669813368898999886857850899999999999999999999999985998999999999853 Q gi|254780178|r 304 ESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQENWK 369 (378) Q Consensus 304 ~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~~~~~~~ 369 (378) .--|++|++-+- ..++-.+| ..+-..||+-|++|.=++-+..|+...+ T Consensus 26 ~lRC~~Cqnqsi------~dSna~~A------------~dmR~~i~~~i~~G~sd~eI~~~lv~RY 73 (84) T 2hl7_A 26 ELRCPKCQNQDI------ADSNAPIA------------ADLRKQIYGQLQQGKSDGEIVDYMVARY 73 (84) T ss_dssp HEECTTSSSCBT------TTCCSHHH------------HHHHHHHHHHHHHTCCHHHHHHHHHHHH T ss_pred HCCCCCCCCCCC------CCCCCHHH------------HHHHHHHHHHHHCCCCHHHHHHHHHHHC T ss_conf 378887699683------00677889------------9999999999995999899999999970 No 76 >>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/proteomics initiative; HET: XMP; 2.10A {Pyrococcus horikoshii} (A:16-486) Probab=35.91 E-value=27 Score=14.96 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=70.2 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 12999999987328977996012133221158999999988999999988513588860554023444366899998876 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERL 205 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l 205 (378) ..+.+.....-.-++|+............ +-...+|.+. ..+...+++.|+ ...-++.+ T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~------~~~~~~~~~~v~-------s~~~a~~a 270 (471) T 2cu0_A 212 PFDIKRAIELDKAGVDVIVVDTAHAHNLK--------AIKSMKEMRQ------KVDADFIVGNIA-------NPKAVDDL 270 (471) T ss_dssp TTCHHHHHHHHHTTCSEEEEECSCCCCHH--------HHHHHHHHHH------TCCSEEEEEEEC-------CHHHHTTC T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCH--------HHHHHHHHCC------CCCCEEEEECCC-------CHHHHHHH T ss_conf 87899999987517856885245444221--------0000122112------332105652357-------78887765 Q ss_pred HHHHHHHHHHHCCCCCCCHH------HHHHHHHHHHHCCCH-HHHEEC-CCCHHHHHHHHHHHCCCCEEEECCE Q ss_conf 42223467664135675167------899899989850770-331002-5410189999998538983662000 Q gi|254780178|r 206 KELDLKGYAIGGLAVGEPQE------VMLHILSNVLPILPV-ERPHYL-MGVGTPDDILKSVSYGVDMFDCVMP 271 (378) Q Consensus 206 ~~~~~~G~aIgGl~~ge~~~------~~~~ii~~~~~~LP~-~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~~p 271 (378) .+.+.|+..++|.+.+.... -+...+..+.+.+.. +-|... =|+.+..++..++++|.|-+-.--+ T Consensus 271 ~~~G~D~i~v~~~~~~g~r~~~~~~~~~~~~l~~v~~~~~~~~i~vi~dGGi~~g~dv~kAlalGA~~v~~G~~ 344 (471) T 2cu0_A 271 TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNL 344 (471) T ss_dssp TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTT T ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHEEEEEEEEEEECCCC T ss_conf 33660045013431114544344454055455544033224575378547645066111366652103450630 No 77 >>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} (A:1-37,A:122-176,A:224-467) Probab=35.49 E-value=22 Score=15.52 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=38.5 Q ss_pred EEEECCCCCCEEEECHHH-HHHH-HH-HCCCCEEEE-----EHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 021014454158712999-9999-87-328977996-----012133221158-99999998899999998851358886 Q gi|254780178|r 113 VRFRSHIDGSLYRVSPEE-SVHI-QN-LLGSDIQMQ-----LDECLALPAEDK-ELKRAMELSLRWAERSLVAFGNQPGK 183 (378) Q Consensus 113 v~f~s~~dG~~~~ltpe~-~i~~-q~-~lg~DI~~~-----LD~~~~~~~~~k-~~~~sv~rT~~w~~~~~~~~~~~~~~ 183 (378) +.|-.+-++..+...|.+ +.+. .+ ..+||.++. +++.++....++ +.++..+.-..|-.. +.+-- T Consensus 73 i~~p~~~~nr~il~~d~E~~~~~l~ei~~~~Dl~ilSGlqml~~~~~dg~~~~~~l~~~~~~l~~l~~~------~i~iH 146 (336) T 1gc5_A 73 IYVPVFEGNKLKLVHPKDAIREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNILNRY------NVKSH 146 (336) T ss_dssp EEEEEECSSCEEEECGGGSCHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHHHHT------TCEEE T ss_pred EEEEEECCCEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH------CCHHH T ss_conf 687775187345306502108569988503122011347999987799970888999999988788761------31232 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 0554023444366899998876422 Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKEL 208 (378) Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378) .=||.+ .++++|+...+-+-.. T Consensus 147 ~ElAs~---~d~~l~~~i~~ilp~V 168 (336) T 1gc5_A 147 FEFAYT---ANRRVREALVELLPKF 168 (336) T ss_dssp EECCCC---CCHHHHHHHHHHGGGC T ss_pred EEEHHH---HHHHHHHHHHHHHHHH T ss_conf 120223---0078999999971441 No 78 >>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} (A:) Probab=35.38 E-value=22 Score=15.61 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=17.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 44436689999887642223467664135675167899899989 Q gi|254780178|r 191 GGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNV 234 (378) Q Consensus 191 GG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~ 234 (378) |+...+--. +.+...++||+.|||.++. .++.+++... T Consensus 229 GSV~~~N~~---~l~~~~~iDG~LVG~asl~---~ef~~ii~~~ 266 (275) T 1mo0_A 229 GSVTADNAA---ELGKKPDIDGFLVGGASLK---PDFVKIINAR 266 (275) T ss_dssp SSCCTTTHH---HHTTSTTCCEEEESGGGGS---THHHHHHHHH T ss_pred CCCCHHHHH---HHHCCCCCCEEEEEHHHCC---HHHHHHHHHH T ss_conf 888987999---9856889886994037568---6699999999 No 79 >>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} (A:19-240) Probab=34.79 E-value=28 Score=14.85 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=13.5 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHH Q ss_conf 12999999987328977996012 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDE 148 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~ 148 (378) .++++...+.+.-.++..+.+.. T Consensus 50 ~s~~E~~~~~~~g~~~~~l~~~~ 72 (222) T 1xfc_A 50 ATVDEALALRADGITAPVLAWLH 72 (222) T ss_dssp SCHHHHHHHHHTTCCSCEEECCC T ss_pred EEHHHHHHHHHCCCCCCEEEEEC T ss_conf 27999999997099886699846 No 80 >>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} (A:1-32,A:117-171,A:218-457) Probab=34.26 E-value=8.9 Score=18.20 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=27.3 Q ss_pred HHHCCCCEEEEE-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH Q ss_conf 873289779960-12133221158999999988999999988513588860554023444366899998876422 Q gi|254780178|r 135 QNLLGSDIQMQL-DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL 208 (378) Q Consensus 135 q~~lg~DI~~~L-D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~ 208 (378) +-..+||.++.= =.........++.++..+.-..|-.. ..+--.=||-+ .+.++|+.-.+-+-.. T Consensus 94 e~~~~pDl~iiSGlqmld~~~~~e~~~~~~~~l~~~~~~------~i~iHlElAs~---~d~~l~~~i~~ilp~V 159 (327) T 1l2l_A 94 EIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDL------GIRAHLEFAFT---PDEVVRLEIVKLLKHF 159 (327) T ss_dssp HHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHT------TCEEEEECCCC---SSHHHHHHHHHHGGGC T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC------CCCEEEEECCC---CHHHHHHHHHHHCCCC T ss_conf 762278889995645554565258999999999844867------87179985445---0999999999742406 No 81 >>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* (A:1-110,A:153-365) Probab=34.20 E-value=29 Score=14.78 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=36.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CHHHHHHHHHHHHHCCCHHHHEECC-CCHHHHHHHHHHHCC Q ss_conf 344436689999887642223467664135675------1678998999898507703310025-410189999998538 Q gi|254780178|r 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGE------PQEVMLHILSNVLPILPVERPHYLM-GVGTPDDILKSVSYG 262 (378) Q Consensus 190 qGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge------~~~~~~~ii~~~~~~LP~~kPr~l~-G~G~P~~i~~~v~~G 262 (378) .|+...+.-.+-++.+.+.+++...+.+-.... ..+...++... ...|..+- |+.+|++...+++.| T Consensus 199 ~~~~~~~e~~~~~~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~i~~~------~~~pvi~nG~i~s~~~a~~~l~~g 272 (323) T 2gou_A 199 NGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALRE------AYQGVLIYAGRYNAEKAEQAINDG 272 (323) T ss_dssp TSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHH------HCCSEEEEESSCCHHHHHHHHHTT T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH------HCCCCEEEECCCCHHHHHHHHHCC T ss_conf 79765530567789998764158407852355644477863789999998------548808998896999999999879 Q ss_pred -CCEE Q ss_conf -9836 Q gi|254780178|r 263 -VDMF 266 (378) Q Consensus 263 -vDlF 266 (378) +|+. T Consensus 273 ~~D~V 277 (323) T 2gou_A 273 LADMI 277 (323) T ss_dssp SCSEE T ss_pred CCCHH T ss_conf 97668 No 82 >>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} (A:164-276) Probab=33.33 E-value=29 Score=14.74 Aligned_cols=63 Identities=11% Similarity=-0.045 Sum_probs=38.9 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 88764222346766413567516789989998985077033100254101899999985389836620 Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 202 a~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) +++..+.+.|...++-+. .+.+.+.+..... .-++.|....|.=+|+++...++.|+|.+=.. T Consensus 47 ~~~a~~~gaD~i~~~~~~----~~~~~~~v~~~~~-~~~~ipi~a~GGIt~~~i~~~~~aGad~i~vg 109 (113) T 2jbm_A 47 AVQAAEAGADLVLLDNFK----PEELHPTATVLKA-QFPSVAVEASGGITLDNLPQFCGPHIDVISMG 109 (113) T ss_dssp HHHHHHTTCSEEEEESCC----HHHHHHHHHHHHH-HCTTSEEEEESSCCTTTHHHHCCTTCCEEECT T ss_pred HHHHHHCCCCEEEECCCC----HHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCEEECC T ss_conf 999997599899975899----9999999999846-48966999989998999999997399999859 No 83 >>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:) Probab=33.23 E-value=18 Score=16.22 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=26.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 332211589999999889999999885135888605540234443668999988764222346766413567 Q gi|254780178|r 150 LALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG 221 (378) Q Consensus 150 ~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g 221 (378) ++..++.+.+++...--.+|+.+.........-..|+| |+..++--. +.+...++||+.|||.++. T Consensus 171 tg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~v~IlYG---GSV~~~n~~---~l~~~~~vDG~LvG~asl~ 236 (259) T 2i9e_A 171 TGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYG---GSVTAANCK---ELASQPDIDGFLVGGASLK 236 (259) T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEC---SCCCTTTHH---HHHTSTTCCEEEESGGGGS T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEC---CCCCHHHHH---HHHCCCCCCEEEEEHHHCC T ss_conf 67666614567788899988863014545367868861---787771699---9956779896996016579 No 84 >>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:) Probab=32.90 E-value=30 Score=14.65 Aligned_cols=76 Identities=11% Similarity=-0.022 Sum_probs=45.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCE Q ss_conf 234443668999988764222346766413567--5167899899989850770331002-5410189999998538983 Q gi|254780178|r 189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVG--EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDM 265 (378) Q Consensus 189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~g--e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDl 265 (378) .-++.......+-+......+.+...++|-..+ -+.+....+.. .....+-|... =|+.++.|++.+.++|.|. T Consensus 141 ~~~~~~~~~~a~~a~~a~~~g~~~i~~~g~~~~~~~~~~~~~~~~~---~~~~~~i~iia~GGI~t~~Dv~kaL~lGA~~ 217 (234) T 1n7k_A 141 EAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRLAS---LAKPLGMGVKASGGIRSGIDAVLAVGAGADI 217 (234) T ss_dssp CGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHHHH---HHGGGTCEEEEESSCCSHHHHHHHHHTTCSE T ss_pred EHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHH---HHCCCCCEEECCCCCCCHHHHHHHHHCCCCE T ss_conf 3101346899999999998086314634676778876599999999---7148991387313879999999999805630 Q ss_pred EE Q ss_conf 66 Q gi|254780178|r 266 FD 267 (378) Q Consensus 266 FD 267 (378) += T Consensus 218 V~ 219 (234) T 1n7k_A 218 IG 219 (234) T ss_dssp EE T ss_pred EE T ss_conf 41 No 85 >>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} (A:) Probab=31.65 E-value=32 Score=14.51 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=10.8 Q ss_pred CCCCHHHHHHCCCCEEEEE Q ss_conf 8868899986099899932 Q gi|254780178|r 43 KAMYFDQVRDLGADVILGN 61 (378) Q Consensus 43 ~~lt~~~l~~~g~~~il~N 61 (378) -.+++.+|+++|+..++-+ T Consensus 83 GevS~~mL~e~G~~~viiG 101 (261) T 1m6j_A 83 GEVHVGMLVDCQVPYVILG 101 (261) T ss_dssp TCCBHHHHHHTTCCEEEES T ss_pred CCCCHHHHHHCCCCEEEEE T ss_conf 5367999997298669970 No 86 >>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} (A:) Probab=29.67 E-value=34 Score=14.29 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=51.7 Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC---HHHHEECCCCHHHHHHHHHHH Q ss_conf 05540234443668999988764222346766413567516789989998985077---033100254101899999985 Q gi|254780178|r 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILP---VERPHYLMGVGTPDDILKSVS 260 (378) Q Consensus 184 ~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP---~~kPr~l~G~G~P~~i~~~v~ 260 (378) .-+|.-+|-...+.+............+ ........+|+.+++.+-+......+. .++...+.+-|.....+.+-. T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Es~~~~~~r~~~~~~~l~~~~~~~~iliVtHg~~i~~~~~~~ 161 (207) T 1h2e_A 83 IHLGDWEGKTHDEIRQMDPIAFDHFWQA-PHLYAPQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAF 161 (207) T ss_dssp CCCGGGTTCBHHHHHHHCHHHHHHHHHC-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHH T ss_conf 2358634643222222688999987616-655389999878888999999999999844899789997589999999999 Q ss_pred CCCCEEE Q ss_conf 3898366 Q gi|254780178|r 261 YGVDMFD 267 (378) Q Consensus 261 ~GvDlFD 267 (378) +|++..+ T Consensus 162 ~~~~~~~ 168 (207) T 1h2e_A 162 KDTPLDH 168 (207) T ss_dssp TTCCGGG T ss_pred HCCCHHH T ss_conf 4959899 No 87 >>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} (A:1-235) Probab=29.09 E-value=35 Score=14.23 Aligned_cols=32 Identities=6% Similarity=-0.210 Sum_probs=16.2 Q ss_pred CCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 770331002-54101899999985389836620 Q gi|254780178|r 238 LPVERPHYL-MGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 238 LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) +-...|++. ++......+....++|.|-+-|. T Consensus 200 ~~~~~~~~~i~~G~d~~~l~~~l~~Ga~G~is~ 232 (235) T 2hmc_A 200 ITSRDDEVTLXIGVDTAVVHGFVNCGATGAITG 232 (235) T ss_dssp TSCSSSSCEEEECSGGGHHHHHHHSCCCEEEES T ss_pred HHCCCCCEEECCCCCHHHHHHHHCCCCCEEEEC T ss_conf 641575335436872145566523578768732 No 88 >>3fem_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, synthase, biosynthetic protein, transferase; 3.02A {Saccharomyces cerevisiae} (A:) Probab=27.43 E-value=37 Score=14.08 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=21.7 Q ss_pred CHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 70331002-541018999999853898366 Q gi|254780178|r 239 PVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 239 P~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) ..+.|... =|+++|+++..+.++|.|-.- T Consensus 204 ~~~ipViaeGgI~tp~da~~a~~lGA~aV~ 233 (297) T 3fem_A 204 KLPVVNFAAGGVATPADAALLMQLGCDGVF 233 (297) T ss_dssp SCSSEEEBCSSCCSHHHHHHHHHTTCSCEE T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCEEE T ss_conf 988467546885883779999972898798 No 89 >>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans c-125} PDB: 1ynq_A* (A:) Probab=27.18 E-value=37 Score=14.01 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=6.3 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 1589999999889999 Q gi|254780178|r 155 EDKELKRAMELSLRWA 170 (378) Q Consensus 155 ~~k~~~~sv~rT~~w~ 170 (378) +++.++++++.+.+.+ T Consensus 113 ~~~~i~~~~~~SL~rL 128 (317) T 1ynp_A 113 SKAYIKEAVKDSLRRL 128 (317) T ss_dssp CHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 5899999999999995 No 90 >>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} (A:) Probab=25.93 E-value=39 Score=13.86 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=27.6 Q ss_pred CCCHHHHEECCCCHHHHHHHHHHHCCCCEEEEC Q ss_conf 077033100254101899999985389836620 Q gi|254780178|r 237 ILPVERPHYLMGVGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 237 ~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~ 269 (378) ....+.|...-|.-+|.++..+++.|+|.+=-- T Consensus 169 ~~~~~~~v~~~GGi~~~~~~~~~~~GAdgvvvG 201 (230) T 1tqj_A 169 ERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAG 201 (230) T ss_dssp HHTCCCEEEEESSCCTTTTHHHHHHTCCEEEES T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC T ss_conf 147882499983889888999998799999978 No 91 >>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, glycerol complex; 1.30A {Thermus thermophilus HB8} (A:) Probab=25.77 E-value=40 Score=13.84 Aligned_cols=38 Identities=11% Similarity=-0.077 Sum_probs=32.9 Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECCC Q ss_conf 70331002541018999999853898366200000233 Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) ....+.+...+.+|.++-.++.+|||.+-+..|....+ T Consensus 184 ~~g~~v~~wtvn~~~~~~~~~~~Gvd~i~TD~p~~~~~ 221 (224) T 1vd6_A 184 KRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLP 221 (224) T ss_dssp HTTCEEEEECCCCHHHHHHHHHTTCSEEEESCHHHHTT T ss_pred HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHH T ss_conf 87999999899989999999975989999896999855 No 92 >>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:258-575) Probab=25.06 E-value=38 Score=13.97 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=91.1 Q ss_pred HHHHHCCCCEE-EEEHHHHHHC----CCHHHH-HHCCCCHHHCCCCCCE--EECCCCCCCCHHHHCCCC-----CCCCEE Q ss_conf 99986099899-9322665738----768998-6527420110157722--411454321012210223-----333102 Q gi|254780178|r 48 DQVRDLGADVI-LGNAYHLMLR----PGAERI-ARLGGLHKFIRWFKPI--LTDSGGFQVMSLSKLCSI-----DEQGVR 114 (378) Q Consensus 48 ~~l~~~g~~~i-l~Ntyhl~~~----pg~~~i-~~~gGlh~fl~~~~~i--lTDSGgfQv~sl~~~~~~-----~~~Gv~ 114 (378) +...+.|++.| |.-|=++++. |..+.. +.+..+-+.+.-..++ +.|.|+-...++.....- ...|+. T Consensus 25 ~~a~~~ga~GIGL~RtE~l~~~~~~~p~e~~q~~~y~~i~~a~~~~pV~iRtlD~g~dk~~~~~~~~~E~NP~LG~RGiR 104 (318) T 2hwg_A 25 EGAERNGAEGVGLYRTEFLFXDRDALPTEEEQFAAYKAVAEACGSQAVIVRTXDIGGDKELPYXNFPKEENPFLGWRAIR 104 (318) T ss_dssp HHHHHTTCSSEEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHH T ss_pred HHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 87776320424556576653012358525678998887765356635999764777543444346643412665420565 Q ss_pred EECCCCCCEEEECHHHHHHHHH--HCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-CCC Q ss_conf 1014454158712999999987--3289779960121332211589999999889999999885135888605540-234 Q gi|254780178|r 115 FRSHIDGSLYRVSPEESVHIQN--LLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGI-VQG 191 (378) Q Consensus 115 f~s~~dG~~~~ltpe~~i~~q~--~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgi-VqG 191 (378) + .+...+..+.|- .++.-....+....|.-........+.+.-.+..+++.+.........-+|+ |+ T Consensus 105 ~---------~l~~p~~f~~QlrAi~rA~~~~~~~i~~pmv~~v~e~~~~~~~~~~~~~~l~~~g~~~~~~~~iG~MiE- 174 (318) T 2hwg_A 105 I---------AXDRREILRDQLRAILRASAFGKLRIXFPXIISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVXVE- 174 (318) T ss_dssp H---------HTTCHHHHHHHHHHHHHHTTSSCEEEEESSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEEC- T ss_pred H---------HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC- T ss_conf 5---------300667988899999976422475466504566178999999999999999983787566642789825- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCC-----------HHHHHHHHHHHHHCC-CHHHHEECCC--CH Q ss_conf 44366899998876422234676641-------356751-----------678998999898507-7033100254--10 Q gi|254780178|r 192 GDNINLRSFSAERLKELDLKGYAIGG-------LAVGEP-----------QEVMLHILSNVLPIL-PVERPHYLMG--VG 250 (378) Q Consensus 192 G~~~dLR~~Sa~~l~~~~~~G~aIgG-------l~~ge~-----------~~~~~~ii~~~~~~L-P~~kPr~l~G--~G 250 (378) -+-. -..++++++ -+|++.||- |++.-. ...+.+.+..+...- -.++|..+.| +| T Consensus 175 --vPsa-~l~~d~~~~-~~DF~SIGTNDLtQy~la~DR~n~~v~~l~d~~~pavl~~i~~vi~~a~~~g~~V~vCGe~a~ 250 (318) T 2hwg_A 175 --TPAA-ATIARHLAK-EVDFFSIGTNDLTQYTLAVDRGNDXISHLYQPXSPSVLNLIKQVIDASHAEGKWTGXCGELAG 250 (318) T ss_dssp --SHHH-HHTHHHHHT-TCSEEEECHHHHHHHHHTCCTTCGGGGGGCCSSSHHHHHHHHHHHHHHHHTTCEEEECSTTTT T ss_pred --CHHH-HHHHHHHHH-HHHEEEECCCHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf --5389-998999997-610656435568889887436871233106867889999999999999971998999278667 Q ss_pred HHHHHHHHHHCCCCEEEECCEEECCC Q ss_conf 18999999853898366200000233 Q gi|254780178|r 251 TPDDILKSVSYGVDMFDCVMPTRAGR 276 (378) Q Consensus 251 ~P~~i~~~v~~GvDlFD~~~ptr~Ar 276 (378) +|..+..++.+|||-| |+.|....+ T Consensus 251 ~p~~~~~L~~lGi~~l-Sv~p~~i~~ 275 (318) T 2hwg_A 251 DERATLLLLGXGLDEF-SXSAISIPR 275 (318) T ss_dssp CTTTHHHHHHTTCCEE-EECGGGHHH T ss_pred CHHHHHHHHHCCCCEE-EECHHHHHH T ss_conf 9899999997799989-988577999 No 93 >>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} (A:15-237) Probab=24.99 E-value=41 Score=13.75 Aligned_cols=138 Identities=12% Similarity=0.011 Sum_probs=54.1 Q ss_pred ECHHHHHHHHHHCCCCEEEEEHHHCCCCCCHHHH------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEC-------CCC Q ss_conf 1299999998732897799601213322115899------999998899999998851358886055402-------344 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKEL------KRAMELSLRWAERSLVAFGNQPGKALFGIV-------QGG 192 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~------~~sv~rT~~w~~~~~~~~~~~~~~~lfgiV-------qGG 192 (378) .++++.....+.--++..+.+............. -.|.+.-.+|++.+... ... ......+- .+| T Consensus 50 as~~E~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~vds~~~l~~l~~~a~~~-~~~-~~v~i~i~~g~~r~g~~g 127 (223) T 1vfs_A 50 ATPEEALELRAAGIQGRIMCWLWTPGGPWREAIETDIDVSVSGMWALDEVRAAARAA-GRT-ARIQLXADTGLGRNGCQP 127 (223) T ss_dssp SSHHHHHHHHHTTCCSEEEECCCCTTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHH-TSC-EEEEEEBCSSCCSSSBCH T ss_pred CCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHC-CCC-CEEEEEECCCCCCCCCCC T ss_conf 369999999970899985898158505688865412230206599999999765513-676-328999527777567371 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCC--CC---CCH----HHHHHHHHHHHHCCCHHHH-EECCCCHHHHHHHHHHHCC Q ss_conf 436689999887642223467664135--67---516----7899899989850770331-0025410189999998538 Q gi|254780178|r 193 DNINLRSFSAERLKELDLKGYAIGGLA--VG---EPQ----EVMLHILSNVLPILPVERP-HYLMGVGTPDDILKSVSYG 262 (378) Q Consensus 193 ~~~dLR~~Sa~~l~~~~~~G~aIgGl~--~g---e~~----~~~~~ii~~~~~~LP~~kP-r~l~G~G~P~~i~~~v~~G 262 (378) ...+.....++.+.+.+ +.-+-|+. .+ ++. +...+.+..+...+....+ .-..-+|.=..+......+ T Consensus 128 ~~~~~~~~~~~~~~~~~--~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~g~g~~~~~~~~~~ 205 (223) T 1vfs_A 128 ADWAELVGAAVAAQAEG--TVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETH 205 (223) T ss_dssp HHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGC T ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHC T ss_conf 37899988766542168--7646899860233443202778999999999999998727886056631331003582104 Q ss_pred CCEEE Q ss_conf 98366 Q gi|254780178|r 263 VDMFD 267 (378) Q Consensus 263 vDlFD 267 (378) +|+.- T Consensus 206 ~~~vr 210 (223) T 1vfs_A 206 FDLVR 210 (223) T ss_dssp SSEEE T ss_pred CCCCC T ss_conf 86025 No 94 >>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} (A:) Probab=24.77 E-value=41 Score=13.72 Aligned_cols=198 Identities=19% Similarity=0.154 Sum_probs=97.0 Q ss_pred CCCCCHHHH-------HHCCCCEEEEEHHHHHHCCC------HHHHHHCCCCHHHC-CCCCCEEECCCCCCCCHHHHCCC Q ss_conf 688688999-------86099899932266573876------89986527420110-15772241145432101221022 Q gi|254780178|r 42 VKAMYFDQV-------RDLGADVILGNAYHLMLRPG------AERIARLGGLHKFI-RWFKPILTDSGGFQVMSLSKLCS 107 (378) Q Consensus 42 v~~lt~~~l-------~~~g~~~il~Ntyhl~~~pg------~~~i~~~gGlh~fl-~~~~~ilTDSGgfQv~sl~~~~~ 107 (378) .+..+++.+ .+.|++++=.|. -.-+|+ .+.++....+=+.+ ..+-||.-||--.++..-+ T Consensus 20 ~~~~~~~~~~~~a~~~~~~GAdiIDig~--~st~P~~~~v~~~ee~~r~~~vv~~i~~~~vpisIDt~~~~v~~~a---- 93 (266) T 1ad1_A 20 GKFNNVESAVTRVKAMMDEGADIIDVGG--VSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEAC---- 93 (266) T ss_dssp TTTCSHHHHHHHHHHHHHTTCSEEEEES--CCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECSCHHHHHHH---- T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCEECCCHHHHHHH---- T ss_conf 7588999999999999987998999788--6179999878999998731771123214575203003687889999---- Q ss_pred CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEE-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 333310210144541587129999999873289779960-1213322115899999998899999998851358886055 Q gi|254780178|r 108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQL-DECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF 186 (378) Q Consensus 108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~L-D~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lf 186 (378) -+.|+.+-+.++|.... ++..+....-++-++... ++.+.+....++.....+....++.++ .-...+.++ T Consensus 94 -l~~G~~iINsisg~~~~---~~~~~l~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----Gi~~~~Iii 165 (266) T 1ad1_A 94 -LKLGVDIINDQWAGLYD---HRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIA----GIPSNKIWL 165 (266) T ss_dssp -HHTTCCEEEETTTTSSC---THHHHHHHHTTCEEEEECCCCTTCCSCHHHHHHHHHHHHHHHHHHT----TCCGGGEEE T ss_pred -HHCCCCEEECCCCCCCC---CCHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCEEEE T ss_conf -73697675142434455---2045576404886156422035432111002466788999999851----145235886 Q ss_pred EECCC-CCCHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHCC-----CHHHHEECCCCHHHHHHHHHH Q ss_conf 40234-443668999988764222346766-41356751678998999898507-----703310025410189999998 Q gi|254780178|r 187 GIVQG-GDNINLRSFSAERLKELDLKGYAI-GGLAVGEPQEVMLHILSNVLPIL-----PVERPHYLMGVGTPDDILKSV 259 (378) Q Consensus 187 giVqG-G~~~dLR~~Sa~~l~~~~~~G~aI-gGl~~ge~~~~~~~ii~~~~~~L-----P~~kPr~l~G~G~P~~i~~~v 259 (378) =|.-| +.....-......+.++...|+.+ -|++ .- .+..+.+ |.++. .++-.-...++ T Consensus 166 DPg~gf~~~~~~~~~~~~~~~~~~~~~~pil~G~S----nk------sf~~~~~~~~~~~~~r~-----~~t~~~~~~a~ 230 (266) T 1ad1_A 166 DPGIGFAKTRNEEAEVMARLDELVATEYPVLLATS----RK------RFTKEMMGYDTTPVERD-----EVTAATTAYGI 230 (266) T ss_dssp ECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEECCT----TS------HHHHTTSSSCCCGGGGH-----HHHHHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC----HH------HHHHHHHCCCCCHHHHH-----HHHHHHHHHHH T ss_conf 15767442311079999887776426996465310----99------99998757999878850-----89999999999 Q ss_pred HCCCCEEEE Q ss_conf 538983662 Q gi|254780178|r 260 SYGVDMFDC 268 (378) Q Consensus 260 ~~GvDlFD~ 268 (378) ..|+|++=. T Consensus 231 ~~G~d~~rv 239 (266) T 1ad1_A 231 MKGVRAVRV 239 (266) T ss_dssp HHTCCEEEE T ss_pred HCCCCEEEE T ss_conf 879989994 No 95 >>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, X-RAY analysis, stability, calorimetry lyase; 2.00A {Pyrococcus furiosus} (A:) Probab=24.75 E-value=41 Score=13.72 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=38.0 Q ss_pred HHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 88764222346766413567-----5167899899989850770331002-541018999999853898366 Q gi|254780178|r 202 AERLKELDLKGYAIGGLAVG-----EPQEVMLHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 202 a~~l~~~~~~G~aIgGl~~g-----e~~~~~~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) ++.+.+.+.++..+++...+ .......+++..+.. ..+.|... -|+++|.++..+.++|.|..= T Consensus 149 a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~ipii~~GGI~~~~dv~~al~~GAd~V~ 218 (248) T 1geq_A 149 LKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKR--ICRNKVAVGFGVSKREHVVSLLKEGANGVV 218 (248) T ss_dssp HHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHH--HCSSCEEEESCCCSHHHHHHHHHTTCSEEE T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEE T ss_conf 9999744886399842667778764320467899999985--258973888154999999999864899999 No 96 >>3l12_A Putative glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Silicibacter pomeroyi} (A:1-65,A:123-313) Probab=24.67 E-value=42 Score=13.71 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=31.6 Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEEECCEEECC Q ss_conf 7033100254101899999985389836620000023 Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAG 275 (378) Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD~~~ptr~A 275 (378) -.++..+..++-+|.++-.+.++|||-.-+..|.+.. T Consensus 209 ~~G~~v~~WTvn~~~~~~~~~~~GVdgIiTD~p~~~~ 245 (256) T 3l12_A 209 DLGLIVLTWTVNEPEDIRRXATTGVDGIVTDYPGRTQ 245 (256) T ss_dssp HTTCEEEEBCCCSHHHHHHHHHHTCSEEEESCHHHHH T ss_pred HCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHH T ss_conf 8799899979998999999986599999978399999 No 97 >>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} (A:) Probab=24.46 E-value=42 Score=13.68 Aligned_cols=29 Identities=14% Similarity=-0.035 Sum_probs=20.6 Q ss_pred CHHHHEECCCCHHHHHHHHHHHCCCCEEE Q ss_conf 70331002541018999999853898366 Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~GvDlFD 267 (378) -.+.|...-|-=+|.++..+.+.|.|.+= T Consensus 148 ~~~ipi~a~GGI~~~~i~~~l~~Ga~~v~ 176 (205) T 1wa3_A 148 FPNVKFVPTGGVNLDNVCEWFKAGVLAVG 176 (205) T ss_dssp CTTCEEEEBSSCCTTTHHHHHHHTCSCEE T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCEEEE T ss_conf 35785787568888999999978992999 No 98 >>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} (A:16-235) Probab=24.26 E-value=42 Score=13.66 Aligned_cols=74 Identities=8% Similarity=-0.014 Sum_probs=37.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCC--CCCCC-------HHHHHHHHHHHHHCCCHHHHEECCCCHHHHHHHHHHHCC Q ss_conf 443668999988764222346766413--56751-------678998999898507703310025410189999998538 Q gi|254780178|r 192 GDNINLRSFSAERLKELDLKGYAIGGL--AVGEP-------QEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYG 262 (378) Q Consensus 192 G~~~dLR~~Sa~~l~~~~~~G~aIgGl--~~ge~-------~~~~~~ii~~~~~~LP~~kPr~l~G~G~P~~i~~~v~~G 262 (378) |...+.-..-++.+.+. ++.-+-|+ +.+.. .+....+..............++...|.-..+......+ T Consensus 125 G~~~~~~~~~~~~~~~~--~~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~ 202 (220) T 3co8_A 125 RSKKDLKDEIEFLQEHS--DHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIXPRYVHVXNSGAAXYHSKELPGC 202 (220) T ss_dssp CSHHHHHHHHHHHHHCT--TTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCTTS T ss_pred CCHHHHHHHHHHHHHHC--CCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCC T ss_conf 72567899999986532--3322022010111235443057889999999999875410215653227663471115654 Q ss_pred CCEEE Q ss_conf 98366 Q gi|254780178|r 263 VDMFD 267 (378) Q Consensus 263 vDlFD 267 (378) .|+.- T Consensus 203 ~~~vR 207 (220) T 3co8_A 203 NSIAR 207 (220) T ss_dssp CSEEE T ss_pred CCCCC T ss_conf 32016 No 99 >>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* (A:) Probab=24.05 E-value=43 Score=13.63 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=28.2 Q ss_pred HHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEEE Q ss_conf 989850770331002-5410189999998538983662 Q gi|254780178|r 232 SNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 232 ~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD~ 268 (378) .......+.+.|... .|+++|+++..+.++|+|-+=. T Consensus 200 ~~~~~~~~~~~~viae~gi~tpeda~~~~e~Gadavlv 237 (297) T 2zbt_A 200 KWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFV 237 (297) T ss_dssp HHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 99999689981564267868837899999748988987 No 100 >>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ... (A:) Probab=23.99 E-value=43 Score=13.63 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=32.9 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH Q ss_conf 21332211589999999889999999885135888605540234443668999988764222346766413567516789 Q gi|254780178|r 148 ECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVM 227 (378) Q Consensus 148 ~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge~~~~~ 227 (378) .-|+..++.+.+++...--.+|+.+.........-..|+| |+...+-- .+.+...++||+.|||.++. .++ T Consensus 172 IGtg~~as~~~i~~~~~~Ir~~~~~~~~~~~~~~v~ilYG---GSV~~~N~---~~l~~~~~vDG~LvG~asl~---~~f 242 (250) T 2j27_A 172 IGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYG---GSVNGKNA---RTLYQQRDVNGFLVGGASLK---PEF 242 (250) T ss_dssp TTSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEE---SSCCTTTH---HHHHTSTTCCEEEESGGGGS---TTH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEC---CCCCHHHH---HHHHCCCCCCEEEECHHHCC---HHH T ss_conf 2655445505567777889999998513213377748971---89898799---99966889997895226478---799 Q ss_pred HHHHHH Q ss_conf 989998 Q gi|254780178|r 228 LHILSN 233 (378) Q Consensus 228 ~~ii~~ 233 (378) .+|+.. T Consensus 243 ~~Ii~~ 248 (250) T 2j27_A 243 VDIIKA 248 (250) T ss_dssp HHHHHT T ss_pred HHHHHH T ss_conf 999996 No 101 >>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondrial, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} (A:54-443) Probab=23.70 E-value=43 Score=13.59 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=49.7 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----C------------HHHHHHHHHHHHHCCCHHHHEEC-CCCH Q ss_conf 2344436689999887642223467664135675-----1------------67899899989850770331002-5410 Q gi|254780178|r 189 VQGGDNINLRSFSAERLKELDLKGYAIGGLAVGE-----P------------QEVMLHILSNVLPILPVERPHYL-MGVG 250 (378) Q Consensus 189 VqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~~ge-----~------------~~~~~~ii~~~~~~LP~~kPr~l-~G~G 250 (378) +-++.....-..-++...+.+.+|+.+.|-.... . .....+++..+...+...-|... =|+- T Consensus 251 ~~~~~~~~~~~~~a~~~~~~g~~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ii~~GGI~ 330 (390) T 1tv5_A 251 LAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIF 330 (390) T ss_dssp ECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCC T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC T ss_conf 69998714679999998750651243034434665421124555664415468999999999999708997299989979 Q ss_pred HHHHHHHHHHCCCCEEE Q ss_conf 18999999853898366 Q gi|254780178|r 251 TPDDILKSVSYGVDMFD 267 (378) Q Consensus 251 ~P~~i~~~v~~GvDlFD 267 (378) ++.|++.++++|+|..= T Consensus 331 ~~~Dv~kala~GAd~V~ 347 (390) T 1tv5_A 331 SGLDALEKIEAGASVCQ 347 (390) T ss_dssp SHHHHHHHHHTTEEEEE T ss_pred CHHHHHHHHHCCCCHHH T ss_conf 99999999985997998 No 102 >>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} (A:10-225) Probab=23.55 E-value=44 Score=13.57 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=34.8 Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCC---C----HHHHHHHHHHHHHCCCHHHHEE-CCCCHHHHHHHH Q ss_conf 02344436689999887642223467664135--675---1----6789989998985077033100-254101899999 Q gi|254780178|r 188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLA--VGE---P----QEVMLHILSNVLPILPVERPHY-LMGVGTPDDILK 257 (378) Q Consensus 188 iVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~--~ge---~----~~~~~~ii~~~~~~LP~~kPr~-l~G~G~P~~i~~ 257 (378) .-.+|..++--..-++.+.+.+ +.-+-|+. .+. + .+...+.+......+....+.. ..-+|.=..+.. T Consensus 118 ~~r~G~~~~~~~~~~~~~~~~~--~l~l~Gi~~H~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ig~~~~~~~ 195 (216) T 2dy3_A 118 LHRSGVDEQEWEGVFSALAAAP--HIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLT 195 (216) T ss_dssp SCSSSBCHHHHHHHHHHHHTCT--TEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHC T ss_conf 3235888899999988764135--41245433331024411203579999999999999876278651444302023312 Q ss_pred HHHCCCCEEE Q ss_conf 9853898366 Q gi|254780178|r 258 SVSYGVDMFD 267 (378) Q Consensus 258 ~v~~GvDlFD 267 (378) +...|.|+.. T Consensus 196 ~~~~~~~~vr 205 (216) T 2dy3_A 196 RSDLHMEMVR 205 (216) T ss_dssp CGGGCTTEEC T ss_pred CCCCCCCEEC T ss_conf 6311366312 No 103 >>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:1-240) Probab=23.40 E-value=29 Score=14.74 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=26.1 Q ss_pred HHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 99989850770331002-541018999999853898366 Q gi|254780178|r 230 ILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 230 ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) .+....+.++.+.|+.. .|+.+|.++ .++++|.|..= T Consensus 197 ~~~~l~~~~~~~ipVia~GGI~~~~dv-kal~~GAdgV~ 234 (240) T 1pii_A 197 RTRELAPKLGHNVTVISESGINTYAQV-RELSHFANGFL 234 (240) T ss_dssp HHHHHHHHHCTTSEEEEESCCCCHHHH-HHHTTTCSEEE T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHH-HHHHCCCCEEE T ss_conf 999986007878779983699999999-99980799999 No 104 >>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation,complex (rubisco/reaction intermediate), high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} (A:158-308,A:380-493) Probab=23.18 E-value=40 Score=13.80 Aligned_cols=74 Identities=18% Similarity=0.047 Sum_probs=33.9 Q ss_pred ECHHHHHHHHH--HC-CCCEEEEEHHHC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH Q ss_conf 12999999987--32-897799601213---32211-5899999998899999998851358886055402344436689 Q gi|254780178|r 126 VSPEESVHIQN--LL-GSDIQMQLDECL---ALPAE-DKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLR 198 (378) Q Consensus 126 ltpe~~i~~q~--~l-g~DI~~~LD~~~---~~~~~-~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR 198 (378) ++|+++-+... .+ |-|++ =||-. ++.++ ++|+...++--.+..++. -+....+.-|.++...+++ T Consensus 32 Ls~~~~a~~~ye~~~GGiDfI--KDDE~l~~qpf~p~~eRv~~v~eai~kA~~ET------Ge~K~~y~NiTa~~~eeM~ 103 (265) T 1bwv_A 32 LSGKNYGRVVYEALKGGLDFV--XDDENINSQPFMRWRERYLFTMEAVNKASAAT------GEVKGHYLNVTAATMEEMY 103 (265) T ss_dssp CCHHHHHHHHHHHHHHTCSEE--ECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHH------TSCCEEEEECCCSSHHHHH T ss_pred CCHHHHHHHHHHHHHCCCEEE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH------CCEEEEEECCCCCCHHHHH T ss_conf 898999999999971676053--16755578777869999999999999999986------9823898406886499999 Q ss_pred HHHHHHHHHH Q ss_conf 9998876422 Q gi|254780178|r 199 SFSAERLKEL 208 (378) Q Consensus 199 ~~Sa~~l~~~ 208 (378) ++ ++...+. T Consensus 104 rr-ae~a~e~ 112 (265) T 1bwv_A 104 AR-ANFAKEL 112 (265) T ss_dssp HH-HHHHHHT T ss_pred HH-HHHHHHC T ss_conf 99-9999975 No 105 >>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} (A:780-1191) Probab=23.02 E-value=45 Score=13.50 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=42.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCC---CHH-------HHHHHHHHHHHCCCH-----HHHEEC-CCCHHHHHHHHHHHCCCC Q ss_conf 9887642223467664135675---167-------899899989850770-----331002-541018999999853898 Q gi|254780178|r 201 SAERLKELDLKGYAIGGLAVGE---PQE-------VMLHILSNVLPILPV-----ERPHYL-MGVGTPDDILKSVSYGVD 264 (378) Q Consensus 201 Sa~~l~~~~~~G~aIgGl~~ge---~~~-------~~~~ii~~~~~~LP~-----~kPr~l-~G~G~P~~i~~~v~~GvD 264 (378) -++.+.+.++|++.++|..-+. ... -....+..+.+.+.+ .-|... =|+.++.+|+.++++|.| T Consensus 230 ~a~~~~~~G~D~Iiv~g~ggg~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~i~viadGGI~~g~di~kALalGAd 309 (412) T 1ea0_A 230 IAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAE 309 (412) T ss_dssp HHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCS T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 99776636799999808998554171778753885489999999999997699761499953896889999999985877 Q ss_pred EEEECCE Q ss_conf 3662000 Q gi|254780178|r 265 MFDCVMP 271 (378) Q Consensus 265 lFD~~~p 271 (378) -.=..-| T Consensus 310 ~V~iG~~ 316 (412) T 1ea0_A 310 EFGIGTA 316 (412) T ss_dssp EEECCHH T ss_pred HHHHHHH T ss_conf 0517799 No 106 >>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} (A:) Probab=21.66 E-value=47 Score=13.32 Aligned_cols=138 Identities=12% Similarity=0.051 Sum_probs=67.2 Q ss_pred CCCCCHHHH-------HHCCCCEEEEEHHHHHHCCCHHHHHH------CC-CCHHHCCCCCCEEECCCCCCCCHHHHCCC Q ss_conf 688688999-------86099899932266573876899865------27-42011015772241145432101221022 Q gi|254780178|r 42 VKAMYFDQV-------RDLGADVILGNAYHLMLRPGAERIAR------LG-GLHKFIRWFKPILTDSGGFQVMSLSKLCS 107 (378) Q Consensus 42 v~~lt~~~l-------~~~g~~~il~Ntyhl~~~pg~~~i~~------~g-Glh~fl~~~~~ilTDSGgfQv~sl~~~~~ 107 (378) ....+++.+ .+.|++++=.|. -.-+|+.+.+.. .. -+...-..+-||.-||---++...+ T Consensus 23 ~~~~~~~~~~~~a~~~~~~GA~iIDIg~--~st~p~~~~i~~eee~~rl~~~v~~i~~~~~piSiDT~~~~v~~~a---- 96 (280) T 1eye_A 23 GCYLDLDDAVKHGLAMAAAGAGIVDVGG--ESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAA---- 96 (280) T ss_dssp CCCCSHHHHHHHHHHHHHTTCSEEEEEC--C--------------HHHHHHHHHHHHHTTCCEEEECSCHHHHHHH---- T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHH---- T ss_conf 8778999999999999988997899799--8789989868979999999999999986898089979869999999---- Q ss_pred CCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEEEHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC Q ss_conf 33331021014454158712999999987328977996012133--22115899999998899999998851---35888 Q gi|254780178|r 108 IDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLA--LPAEDKELKRAMELSLRWAERSLVAF---GNQPG 182 (378) Q Consensus 108 ~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD~~~~--~~~~~k~~~~sv~rT~~w~~~~~~~~---~~~~~ 182 (378) -+.|+..-+.++|.. ...+..++...-+..+++...+-.+ .....++.+..++.-.+|+++.++.. .-... T Consensus 97 -l~~G~~iINdisg~~---~~~~~~~l~~~~~~~vV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ 172 (280) T 1eye_A 97 -LQNGAQMVNDVSGGR---ADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPA 172 (280) T ss_dssp -HHTTCCEEEETTTTS---SCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGG T ss_pred -HHCCCCEEEECCCCC---CCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf -983998999888777---7611999999719989998279997555777765441999999999999999998699830 Q ss_pred CEEEEEC Q ss_conf 6055402 Q gi|254780178|r 183 KALFGIV 189 (378) Q Consensus 183 ~~lfgiV 189 (378) +.+|=|. T Consensus 173 ~iiiDPg 179 (280) T 1eye_A 173 RLVLDPG 179 (280) T ss_dssp GEEEECC T ss_pred HEEEECC T ss_conf 2899489 No 107 >>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} (A:) Probab=21.29 E-value=48 Score=13.27 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=10.2 Q ss_pred ECHHHHHHHHHHCCCCEEEE Q ss_conf 12999999987328977996 Q gi|254780178|r 126 VSPEESVHIQNLLGSDIQMQ 145 (378) Q Consensus 126 ltpe~~i~~q~~lg~DI~~~ 145 (378) +|-|-+.+..+.+|.+.++. T Consensus 68 ~TGeiS~~mLkd~g~~~vii 87 (244) T 2v5b_A 68 AGNADALASLKDYGISWVVL 87 (244) T ss_dssp CCCHHHHHHHHHTTCCEEEE T ss_pred CCCCCCHHHHHHHHHHHHHH T ss_conf 43215688898765224322 No 108 >>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain closure; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 1tpl_A 2tpl_A* 1c7g_A* (A:1-52,A:311-456) Probab=21.12 E-value=39 Score=13.87 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=25.1 Q ss_pred CEEECCCCCCCCH--------HHHCCCCCCCCEEEECCCCCCEEEECHHHH Q ss_conf 2241145432101--------221022333310210144541587129999 Q gi|254780178|r 89 PILTDSGGFQVMS--------LSKLCSIDEQGVRFRSHIDGSLYRVSPEES 131 (378) Q Consensus 89 ~ilTDSGgfQv~s--------l~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~ 131 (378) .+|||||-+.-.+ |+. +..+.||-...+.+|--+++..... T Consensus 46 DlLTDSGd~~yl~~Ri~qv~yLg~--~L~~aGVPiv~P~GGHav~iDA~~f 94 (198) T 2ez2_A 46 DLLTDSGQYEYIEHRVKQVRYLGD--KLKAAGVPIVEPVGGHAVFLDARRF 94 (198) T ss_dssp ECSCSSSCHHHHHHHHHHHHHHHH--HHHHTTCCBCSSCCSSEEEEEHHHH T ss_pred ECCCCCCCHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 761478867999999999999999--9986588765678864221204654 No 109 >>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} (A:) Probab=21.04 E-value=49 Score=13.24 Aligned_cols=35 Identities=11% Similarity=-0.062 Sum_probs=28.3 Q ss_pred HHHCCCHHHHEECCCCHHHHHHHHHHHCCCCEEEE Q ss_conf 98507703310025410189999998538983662 Q gi|254780178|r 234 VLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 234 ~~~~LP~~kPr~l~G~G~P~~i~~~v~~GvDlFD~ 268 (378) ....-....|...-|.-+|.++..+.+.|+|.+=. T Consensus 163 ~~~~~~~~~~v~~~GGi~~~d~~~~~~~Gadgv~v 197 (220) T 2fli_A 163 WRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVA 197 (220) T ss_dssp HHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEE T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEE T ss_conf 88750996389986867988999999879999997 No 110 >>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Zea mays} (A:344-376,A:518-876) Probab=20.97 E-value=49 Score=13.23 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=24.0 Q ss_pred HHHEECCC--CHHHHHHHHHHHCCCCEEEEC Q ss_conf 33100254--101899999985389836620 Q gi|254780178|r 241 ERPHYLMG--VGTPDDILKSVSYGVDMFDCV 269 (378) Q Consensus 241 ~kPr~l~G--~G~P~~i~~~v~~GvDlFD~~ 269 (378) ++|..+.| +|+|..+..++.+|||-|=|+ T Consensus 346 ~i~v~vCGe~a~dp~~i~~L~~lGi~~lSvs 376 (392) T 1vbg_A 346 NLKVGICGEHGGEPSSVAFFAKAGLDYVSCS 376 (392) T ss_dssp TCEEEEESGGGGSHHHHHHHHHTTCSEEEEC T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEC T ss_conf 9879982764569999999998799989988 No 111 >>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:) Probab=20.89 E-value=49 Score=13.22 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=7.3 Q ss_pred CCCHHHHHHCCCCEEEE Q ss_conf 86889998609989993 Q gi|254780178|r 44 AMYFDQVRDLGADVILG 60 (378) Q Consensus 44 ~lt~~~l~~~g~~~il~ 60 (378) .+++++|+++|++-++. T Consensus 79 eiS~~mL~d~G~~~vli 95 (256) T 1aw2_A 79 DMSPAMLKEFGATHIII 95 (256) T ss_dssp CCCHHHHHHHTCCEEEE T ss_pred CCCHHHHHHHHCCEEEE T ss_conf 01399886430231443 No 112 >>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} (A:1-71,A:296-426) Probab=20.83 E-value=49 Score=13.21 Aligned_cols=33 Identities=27% Similarity=0.517 Sum_probs=21.6 Q ss_pred EHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 0121332211589999999889999999885135 Q gi|254780178|r 146 LDECLALPAEDKELKRAMELSLRWAERSLVAFGN 179 (378) Q Consensus 146 LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~ 179 (378) |++.++.++-.= .+.+++..++|+.+....+.- T Consensus 40 ~~~~~~lp~av~-~~~~l~~n~~wmq~~~~~~~f 72 (202) T 3gwq_A 40 LNEDVSLPAAVL-YADRVEHNLKWXQAFVAEYGF 72 (202) T ss_dssp GGTCBCSSEEEE-EHHHHHHHHHHHHHHHHHHCC T ss_pred CCCCCCCCEEEE-CHHHHHHHHHHHHHHHHHCCC T ss_conf 443579963998-299999999999997744690 No 113 >>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:149-309) Probab=20.81 E-value=38 Score=13.97 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=14.1 Q ss_pred CCCEEECCCC-CCCCHHHHCC Q ss_conf 7722411454-3210122102 Q gi|254780178|r 87 FKPILTDSGG-FQVMSLSKLC 106 (378) Q Consensus 87 ~~~ilTDSGg-fQv~sl~~~~ 106 (378) ...+||.||| |.-+++..+. T Consensus 39 ~kiiLTASGGpFr~~~~~~l~ 59 (161) T 1q0q_A 39 VSILLTGSGGPFRETPLRDLA 59 (161) T ss_dssp EEEEEEECCCTTTTSCGGGGG T ss_pred EEEEEECCCCCHHCCCHHHHH T ss_conf 279995467504207677774 No 114 >>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} (A:112-235) Probab=20.75 E-value=36 Score=14.10 Aligned_cols=29 Identities=7% Similarity=0.227 Sum_probs=23.4 Q ss_pred CCCCCEEEECHHHHHHHHHHCCCCEEEEEH Q ss_conf 445415871299999998732897799601 Q gi|254780178|r 118 HIDGSLYRVSPEESVHIQNLLGSDIQMQLD 147 (378) Q Consensus 118 ~~dG~~~~ltpe~~i~~q~~lg~DI~~~LD 147 (378) +++|. ..++|++.+++.+.++|.++++.- T Consensus 70 pigg~-~~~~~~~a~~~~~~l~~k~viP~H 98 (124) T 3kl7_A 70 PVNQP-YTXTVSQAAKAARXFSPKILYPYH 98 (124) T ss_dssp ECCTT-TSCCHHHHHHHHHHHCCSEEEEES T ss_pred CCCCC-CCCCHHHHHHHHHHHCCCEEEEEC T ss_conf 99997-767999999999972999999946 No 115 >>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (A:) Probab=20.66 E-value=50 Score=13.19 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=26.1 Q ss_pred HHHHHHHHHCCCHHHHEEC-CCCHHHHHHHHHHHCCCCEEE Q ss_conf 9899989850770331002-541018999999853898366 Q gi|254780178|r 228 LHILSNVLPILPVERPHYL-MGVGTPDDILKSVSYGVDMFD 267 (378) Q Consensus 228 ~~ii~~~~~~LP~~kPr~l-~G~G~P~~i~~~v~~GvDlFD 267 (378) .+.+..+.. -.+.|... -|+++|.++..+.++|.|.+- T Consensus 194 ~~~v~~~~~--~~~ipii~~GGI~t~~dv~~a~~~GAd~V~ 232 (268) T 1qop_A 194 HHLIEKLKE--YHAAPALQGFGISSPEQVSAAVRAGAAGAI 232 (268) T ss_dssp HHHHHHHHH--TTCCCEEEESSCCSHHHHHHHHHTTCSEEE T ss_pred HHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEE T ss_conf 999999987--378974898325989999999863899999 No 116 >>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (B:475-637) Probab=20.65 E-value=49 Score=13.24 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=24.9 Q ss_pred CCCCCCCCHHHHCCCCCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEEE Q ss_conf 14543210122102233331021014454158712999999987328977996 Q gi|254780178|r 93 DSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQ 145 (378) Q Consensus 93 DSGgfQv~sl~~~~~~~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~lg~DI~~~ 145 (378) -++||.+..++ .-+|++.++....-++|++.. T Consensus 61 ~~~G~~v~~lg---------------------~~~p~~~~~a~~~~~~d~i~l 92 (163) T 1req_B 61 HIAGIDTPQVE---------------------GGTTAEIVEAFKKSGAQVADL 92 (163) T ss_dssp HHTTCBCCEEE---------------------CCCHHHHHHHHHHHTCSEEEE T ss_pred HHCCCCCCCCC---------------------CCCHHHHHHHHHHCCCCEEEE T ss_conf 84484203588---------------------899899999998659988999 No 117 >>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A (A:) Probab=20.47 E-value=50 Score=13.16 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=10.3 Q ss_pred CHHHHHHHHHHHCCCCEEEE Q ss_conf 10189999998538983662 Q gi|254780178|r 249 VGTPDDILKSVSYGVDMFDC 268 (378) Q Consensus 249 ~G~P~~i~~~v~~GvDlFD~ 268 (378) .|.-..++.+..+|.|-+-+ T Consensus 176 ~g~~~~~~~~l~~G~~G~i~ 195 (286) T 2r91_A 176 NGSDSLVFASFAVRLDGVVA 195 (286) T ss_dssp ECCGGGHHHHHHTTCSEECC T ss_pred CCCCCCCCHHHHHCCCEEEE T ss_conf 88642223667640550031 No 118 >>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* (B:) Probab=20.32 E-value=50 Score=13.14 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=78.6 Q ss_pred EEECHHHHHHHHHHC----------CCCEEEE------E-HHHCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHCCCCCCE Q ss_conf 871299999998732----------8977996------0-121332211-5-8999999988999999988513588860 Q gi|254780178|r 124 YRVSPEESVHIQNLL----------GSDIQMQ------L-DECLALPAE-D-KELKRAMELSLRWAERSLVAFGNQPGKA 184 (378) Q Consensus 124 ~~ltpe~~i~~q~~l----------g~DI~~~------L-D~~~~~~~~-~-k~~~~sv~rT~~w~~~~~~~~~~~~~~~ 184 (378) ..+|-+++-++++.+ |-|.+.. | +....+... + ++---|++.=.|++.+.+++-.+.-... T Consensus 159 ~~lt~~eI~~ii~~f~~AA~~A~~AGfDgVEIh~ahGyLl~QFlSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aIR~~vg~~ 238 (402) T 2hsa_B 159 RAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGAD 238 (402) T ss_dssp EECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCC T ss_conf 76899999999999999999998549527882003110688887754445664333100143124689987544244057 Q ss_pred E----------------EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC--CCCC--------CCHHHHHHHHHHHHHCC Q ss_conf 5----------------54023444366899998876422234676641--3567--------51678998999898507 Q gi|254780178|r 185 L----------------FGIVQGGDNINLRSFSAERLKELDLKGYAIGG--LAVG--------EPQEVMLHILSNVLPIL 238 (378) Q Consensus 185 l----------------fgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgG--l~~g--------e~~~~~~~ii~~~~~~L 238 (378) . ...+.||...|.-.+-++.+.+.++|.+-+.. .... .+..........+.. T Consensus 239 ~i~~~~~~~~~~~~~~~~~~~~~G~~~ee~~~~~~~l~~~GvD~i~vs~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 316 (402) T 2hsa_B 239 RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRN-- 316 (402) T ss_dssp GEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHH-- T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-- T ss_conf 622055124313456656417888889999878887403665418852565555566556646762112799999998-- Q ss_pred CHHHHEECCCCHHHHHHHHHHHCC-CCEEE Q ss_conf 703310025410189999998538-98366 Q gi|254780178|r 239 PVERPHYLMGVGTPDDILKSVSYG-VDMFD 267 (378) Q Consensus 239 P~~kPr~l~G~G~P~~i~~~v~~G-vDlFD 267 (378) -...|...-|..+|.+...+++.| +|+.= T Consensus 317 ~~~~pv~~~g~~~~~~a~~~l~~g~~D~v~ 346 (402) T 2hsa_B 317 AYQGTFICSGGYTRELGIEAVAQGDADLVS 346 (402) T ss_dssp HCSSCEEEESSCCHHHHHHHHHTTSCSEEE T ss_pred HCCCCEEEECCCCHHHHHHHHHCCCCCEEE T ss_conf 548988985898989999999869962731 No 119 >>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism, cytoplasm, hydrolase, manganese; 1.85A {Escherichia coli K12} PDB: 2r8t_A 3bih_A 1ni9_A 3d1r_A* (A:116-275) Probab=20.15 E-value=47 Score=13.36 Aligned_cols=111 Identities=17% Similarity=0.217 Sum_probs=52.7 Q ss_pred CCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 97799601213322115899999998899999998851358886055402344436689999887642223467664135 Q gi|254780178|r 140 SDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLA 219 (378) Q Consensus 140 ~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG~~~dLR~~Sa~~l~~~~~~G~aIgGl~ 219 (378) ||++|-==...|...+.-.+..+++.+++...+++.. .-. -|--+| +++.-.+.-++++.+.+..-..| + T Consensus 3 Pd~YM~Kiavgp~~~g~Idl~~p~~~Nl~~vA~algk---~v~-dltV~v---LdRpRH~~lI~eiR~~Gari~Li---~ 72 (160) T 3big_A 3 PDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGK---PLS-ELTVTI---LAKPRHDAVIAEMQQLGVRVFAI---P 72 (160) T ss_dssp CSSEEEEEEECGGGTTCCCTTSCHHHHHHHHHHHHTS---CGG-GCEEEE---ECSGGGHHHHHHHHHHTCEEEEE---S T ss_pred HHHHEEEEEECCCCCCEECCCCCHHHHHHHHHHHCCC---CHH-HCEEEE---EECCHHHHHHHHHHHCCCEEEEC---C T ss_conf 4762123464687788533899989999999998099---965-838999---85645799999999759918971---6 Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHEECCCC-HHHHHHHHHHH---CCCCEEE Q ss_conf 675167899899989850770331002541-01899999985---3898366 Q gi|254780178|r 220 VGEPQEVMLHILSNVLPILPVERPHYLMGV-GTPDDILKSVS---YGVDMFD 267 (378) Q Consensus 220 ~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~-G~P~~i~~~v~---~GvDlFD 267 (378) -| ++-..+...+|...--.+||+ |.|+-++.|.+ +|=+|.= T Consensus 73 DG-------DVa~ai~~~~~~sgvD~~~GiGGaPEGVlaAaAlkclGG~mqg 117 (160) T 3big_A 73 DG-------DVAASILTCMPDSEVDVLYGIGGAPEGVVSAAVIRALDGDMNG 117 (160) T ss_dssp SC-------SHHHHHHTTCTTSSCCEEEEEEEHHHHHHHHHHHHHHTCEEEE T ss_pred CC-------CHHHEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEE T ss_conf 76-------7678112136776326998638781899999999866981589 Done!