HHsearch results for GI: 254780178 and protein with PDBid: 1rqb_A

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transferase; HET: KCX; 1.90A {Propionibacterium freudenreichiisubsp} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=94.27  E-value=0.3  Score=27.08  Aligned_cols=219  Identities=16%  Similarity=0.176  Sum_probs=114.8

Q ss_pred             HHHHHHHHCCCCEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHHHHHHH
Q ss_conf             999998732897799601213322115899999998899999998851358886055402344-4366899998876422
Q gi|254780178|r  130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIVQGG-DNINLRSFSAERLKEL  208 (378)
Q Consensus       130 ~~i~~q~~lg~DI~~~LD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~lfgiVqGG-~~~dLR~~Sa~~l~~~  208 (378)
                      ..++.-..-+-|++-.+|.....    ...+.++    ..+++    ... .-+..+...-++ ..+|.-...++.+.+.
T Consensus       121 ~~v~~s~~~g~~~~r~~~~~~~~----~~~~~~~----~~~~~----~g~-~~~~~~~~~~~~~~~~~~~~~~a~~l~~~  187 (539)
T 1rqb_A          121 RFVDKSAENGMDVFRVFDAMNDP----RNMAHAM----AAVKK----AGK-HAQGTICYTISPVHTVEGYVKLAGQLLDM  187 (539)
T ss_dssp             HHHHHHHHTTCCEEEECCTTCCT----HHHHHHH----HHHHH----TTC-EEEEEEECCCSTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCHHHCCCCHHHHH----HHHHHHH----HHHHH----CCC-EEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             99999998451666168679999----9889999----99997----699-56899995578877899999999998725


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHEECCCC----HHHHHHHHHHHCCCCEEEECCEEECCCCCCCCC--
Q ss_conf             23467664135675167899899989850770331002541----018999999853898366200000233200245--
Q gi|254780178|r  209 DLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGV----GTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT--  282 (378)
Q Consensus       209 ~~~G~aIgGl~~ge~~~~~~~ii~~~~~~LP~~kPr~l~G~----G~P~~i~~~v~~GvDlFD~~~ptr~Ar~G~~~t--  282 (378)
                      +.+.+.|.--.....-+...+++..+...+|.+.|.++++-    --....+.|++.|+|.|||+..-.-.+-|..-+  
T Consensus       188 Gad~I~l~Dt~G~~~P~~v~~lv~~lk~~~~~~~~i~~H~Hnt~Gla~An~laAieaGad~vD~ai~glGg~tgnp~~E~  267 (539)
T 1rqb_A          188 GADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTES  267 (539)
T ss_dssp             TCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBHHH
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
T ss_conf             98789955866665899999999999986586443256634887629999999998599999968656788888976999


Q ss_pred             ------CCC---CHHHHH----HHHCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ------621---002101----2322368855986698133688989998868578508999999999999999999999
Q gi|254780178|r  283 ------RFG---KINLRN----ARHIDDMRPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIR  349 (378)
Q Consensus       283 ------~~g---~i~l~~----~~~~~d~~pi~~~C~C~~C~~ytraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR  349 (378)
                            ..|   -+|+..    +.|..+..+.-....... .--+.-|.|      ++=|..+         ..+..+.+
T Consensus       268 vv~~L~~~g~~t~id~~~l~~i~~~~~~~r~~y~~~~~~~-~~~~~v~~~------~~PGG~~---------snl~~q~~  331 (539)
T 1rqb_A          268 VAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKT-LVDTSIFKS------QIPGGML---------SNMESQLR  331 (539)
T ss_dssp             HHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSC-SCCCTHHHH------CCCHHHH---------HHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCEEEEC------CCCCCCC---------CCHHHHHH
T ss_conf             9999863898887689999999999999998743576544-566501333------8984503---------56688998


Q ss_pred             HHHHCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9998599899999999985327998665
Q gi|254780178|r  350 SAIAEDCFVDFAMQTQENWKKGDIPPIF  377 (378)
Q Consensus       350 ~aI~~g~f~~~~~~~~~~~~~~~~~~~~  377 (378)
                      +.=..++|.+-.+++-+.++..-.|+.-
T Consensus       332 ~~g~~~~~~ev~~e~~~v~~~lG~~~~V  359 (539)
T 1rqb_A          332 AQGAEDKMDEVMAEVPRVRKAAGFPPLV  359 (539)
T ss_dssp             TTSCCTTHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             6784766999999999999976999730