RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780178|ref|YP_003064591.1| queuine
tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(378 letters)
>gnl|CDD|178873 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.
Length = 366
Score = 639 bits (1650), Expect = 0.0
Identities = 202/358 (56%), Positives = 249/358 (69%), Gaps = 1/358 (0%)
Query: 5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH 64
F L G AR G + TP GV++TPAFMPVGT GTVK M +++++ GA +ILGN YH
Sbjct: 3 MKFELIKTDGRARRGRLTTPHGVVETPAFMPVGTYGTVKGMTPEELKETGAQIILGNTYH 62
Query: 65 LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124
L LRPG E I + GGLHKF+ W PILTDSGGFQV SLS L I E+GV FRSHIDGS +
Sbjct: 63 LWLRPGLEIIKKHGGLHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKH 122
Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP-GK 183
++PE+S+ IQ LGSDI M DEC PA K++ME +LRWAERS A +
Sbjct: 123 FLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDYAKKSMERTLRWAERSRDAHDRLENDQ 182
Query: 184 ALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERP 243
ALFGIVQGG +LR SA+ L E+D GYAIGGL+VGEP+E M IL + P+LP ++P
Sbjct: 183 ALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKP 242
Query: 244 HYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDA 303
YLMGVGTP+D+++ V+ GVDMFDCVMPTR R+G FT FG++N+RNA++ +D RPLD
Sbjct: 243 RYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTSFGRLNIRNAKYKEDTRPLDP 302
Query: 304 ESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFA 361
E C R+YSRAYLHHL R E L + + NL YYQ LM+EIR AI E F +F
Sbjct: 303 ECDCYTCRNYSRAYLHHLFRAGEILGARLNTIHNLHYYQRLMEEIREAIEEGRFEEFR 360
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase,
queuosine-34-forming. This tRNA-guanine
transglycosylase (tgt) catalyzes an exchange for the
guanine base at position 34 of many tRNAs; this
nucleotide is subsequently modified to queuosine. The
Archaea have a closely related enzyme that catalyzes a
base exchange for guanine at position 15 in some tRNAs,
a site that is subsequently converted to the
archaeal-specific modified base archaeosine
(7-formamidino-7-deazaguanosine), while Archaeoglobus
fulgidus has both enzymes.
Length = 368
Score = 459 bits (1183), Expect = e-130
Identities = 192/355 (54%), Positives = 248/355 (69%), Gaps = 1/355 (0%)
Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLM 66
F L+ AR+G++ TP G ++TP FMPVGT GTVK + +++ GA++IL N YHL
Sbjct: 1 FELQKTDKHARVGKLNTPHGSVETPVFMPVGTLGTVKGLTPEELEATGAEIILANTYHLW 60
Query: 67 LRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRV 126
LRPG + + LGGLHKF++W PILTDSGGFQV SLS L I+E+GV F+S IDGS +
Sbjct: 61 LRPGQKIVKELGGLHKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFL 120
Query: 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGK-AL 185
+PE+S+ IQ LGSDI M DEC PA+ +++ E +LRWAER L A + K AL
Sbjct: 121 TPEKSMEIQYALGSDIIMAFDECTPYPADRDYAEKSTERTLRWAERCLEAHDRRGNKQAL 180
Query: 186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY 245
FGIVQGG +LRS SAE L ELD GYAIGGL+VGEP+E ML IL + P+LP ++P Y
Sbjct: 181 FGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPKDKPRY 240
Query: 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAES 305
LMGVGTP+D+L ++ G+DMFDCVMPTR R+G F G+IN++NA++ DD RPLD E
Sbjct: 241 LMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVTEGRINIKNAKYKDDTRPLDEEC 300
Query: 306 HCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360
C ++YSRAYL HL+R NE L + + NL +Y LM++IR AI ED F+ F
Sbjct: 301 DCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHFYLRLMEKIRQAILEDRFLSF 355
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine transglycosylases, various
specificities. Different tRNA-guanine transglycosylases
catalyze different tRNA base modifications. Two guanine
base substitutions by different enzymes described by the
model are involved in generating queuosine at position
34 in bacterial tRNAs and archaeosine at position 15 in
archaeal tRNAs. This model is designed for fragment
searching, so the superfamily is used loosely.
Length = 367
Score = 439 bits (1130), Expect = e-124
Identities = 183/354 (51%), Positives = 239/354 (67%)
Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLM 66
F +K G AR+G + TP G ++TP FMPVGT GTVK + ++++ GA +IL N YHL
Sbjct: 1 FEIKKTDGHARVGRLKTPHGSVETPVFMPVGTLGTVKGLTPEELKKTGAQIILANTYHLY 60
Query: 67 LRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYRV 126
LRPG + +A LGGLHKF++W PILTDSGGFQV SL L I+E+GV F+S IDGS +
Sbjct: 61 LRPGQKIVALLGGLHKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPIDGSKIFL 120
Query: 127 SPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALF 186
+PE+ + IQ LGSDI M LDEC PA+ + ++E +LRWAE SL + ALF
Sbjct: 121 TPEKIMEIQYALGSDIIMALDECTPPPADYDYAEESLERTLRWAEESLEYHKRRNENALF 180
Query: 187 GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYL 246
GIVQGG +LR SAE L ELD GYAIGG++VGEP+ ML IL +V P+LP ++P YL
Sbjct: 181 GIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKDKPRYL 240
Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESH 306
MGVGTP+ + +VS G+DMFDCV PTR R+G T G+I ++NA++ DD RPLD
Sbjct: 241 MGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTTEGRIKIKNAKYKDDTRPLDEPCD 300
Query: 307 CSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360
C ++YSRAYL HL+R NE L + + NL + L+++IR AI ED + F
Sbjct: 301 CYVCKNYSRAYLRHLIRCNELLGARLATEHNLHFSFRLIEKIRQAILEDRLLSF 354
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional.
Length = 372
Score = 272 bits (698), Expect = 9e-74
Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 25/375 (6%)
Query: 1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60
M F ++ AR+G I T G+I TPAF+PV T G +K + + ++
Sbjct: 1 MALKFELLHQSKKSRARVGRIETAHGIIDTPAFVPVATNGALKGV----LDHSNIPLMFC 56
Query: 61 NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSL------------------ 102
N YHL++ PG E IA +GGLH+FI PI+TDSGGFQ+ SL
Sbjct: 57 NTYHLLVHPGTEAIAAMGGLHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGG 116
Query: 103 SKLCSIDEQGVRFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRA 162
S + I ++GV F+S+ DG +SPE SV Q LG+DI + LDE L A+ ++
Sbjct: 117 SSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLGADIIIPLDELLPFHADPTYFLQS 176
Query: 163 MELSLRWAERSLVAFGNQPG-KALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVG 221
+ + W +RSL P ++++G++ GG + + R + +++L G AIGG ++G
Sbjct: 177 CQRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG-SLG 235
Query: 222 EPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAF 281
+ + M+ ++ L ERP +L+G+G I +V +G+D FD PT+A RHGL
Sbjct: 236 KNLQEMVEVVGVTTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLIL 295
Query: 282 TRFGKINLRNARHIDDMRPLDAESHCSA-LRDYSRAYLHHLLRVNESLAGMILSWANLAY 340
T+ G + + N R+ D+ P++ C A SRAYL HL +V+E AG+ S NL +
Sbjct: 296 TKQGPLKINNQRYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHH 355
Query: 341 YQDLMKEIRSAIAED 355
Q +MKEIR I D
Sbjct: 356 MQQVMKEIREQILND 370
>gnl|CDD|184121 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 639
Score = 108 bits (273), Expect = 2e-24
Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 32/267 (11%)
Query: 7 FNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAG--TVKAMYFDQVRDLGADVILGNAYH 64
F +KA R+G++ T I+TP MPV TV D+++ LG D+++ N+Y
Sbjct: 2 FEIKARDALGRIGKLKTNGKKIETPTIMPVINPKKQTVDP---DEIKKLGFDIVITNSYI 58
Query: 65 LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124
+ P A G+H I + PI+TDSG FQ LS ++
Sbjct: 59 IYKTPELREKALEKGIHSLIGFDGPIMTDSGSFQ---LSVYGDVE--------------- 100
Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA 184
V+ E + Q +G DI LD ++ + +E +L A+ ++ A
Sbjct: 101 -VTNREIIEFQEKIGVDIGTILDIPTPPDVSREKAEEDLEETLERAKEAIEIKEKL---A 156
Query: 185 LFGIVQGGDNINLRSFSAERLKELDLKGYAIGG----LAVGEPQEVMLHILSNVLPILPV 240
L G VQG +LR SAE + +++ Y IG + ++++ I+++ + LP
Sbjct: 157 LNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGAVVPLMESYRYRDLVDIIINSKMH-LPT 215
Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFD 267
+P +L G G P +V+ G D+FD
Sbjct: 216 NKPVHLFGAGHPMFFALAVALGCDLFD 242
>gnl|CDD|184120 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase;
Provisional.
Length = 487
Score = 101 bits (253), Expect = 4e-22
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 48/276 (17%)
Query: 6 HFNLKAVSGSARLGEIITPRGVIKTPAFMPV--GTAGTVKAMYFDQVRDLGADVILGNAY 63
F ++ + R+G++ TP GV++TPA PV + D++++ GA++++ N+Y
Sbjct: 4 VFEIRDKDLAGRIGKLKTPHGVVETPALFPVINPNKQEISP---DELKEFGAEILITNSY 60
Query: 64 HLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSL 123
++ R E+ A GLHK + + PI+TDSG +Q++ G ++
Sbjct: 61 -IIYRSLREK-ALEKGLHKLLGFDGPIMTDSGSYQLL---------VYG-----DVE--- 101
Query: 124 YRVSPEESVHIQNLLGSDIQMQLDECLALP----AEDKELKRAMELSLRWAERSLVAFGN 179
V+ EE + Q +GSDI + LD +P + +E + +E +L E +
Sbjct: 102 --VTNEEILEFQRKIGSDIGVPLD----IPTPPDVDYEEAEEELEETLERLEEAAELI-- 153
Query: 180 QPGKALF-GIVQGGDNINLRSFSAERLKELDLKGYAIGGLAV-------GEPQEVMLHIL 231
Q G L+ VQGG +LR SA +L Y IG + + +V+L
Sbjct: 154 QDGDMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAK 213
Query: 232 SNVLPILPVERPHYLMGVGTPDDILKSVSYGVDMFD 267
L P +L G G P +V+ G D+FD
Sbjct: 214 RG----LGPGAPVHLFGAGHPMMFALAVALGCDLFD 245
>gnl|CDD|161875 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase,
archaeosine-15-forming. This tRNA-guanine
transglycosylase (tgt) differs from the tgt of E. coli
and other Bacteria in the site of action and the
modification that results. It exchanges
7-cyano-7-deazaguanine (preQ0) with guanine at position
15 of archaeal tRNA; this nucleotide is subsequently
converted to archaeosine, found exclusively in the
Archaea. This enzyme from Haloferax volcanii has been
purified, characterized, and partially sequenced and is
the basis for identifying this family. In contrast,
bacterial tgt catalyzes the exchange of preQ0 or preQ1
for the guanine base at position 34; this nucleotide is
subsequently modified to queuosine. Archeoglobus
fulgidus has both enzymes, while some other Archaea have
just this one.
Length = 540
Score = 52.2 bits (125), Expect = 2e-07
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 130 ESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKALFGIV 189
E + Q +GSDI LD + + +E++L R + L V
Sbjct: 2 EIIEFQRHIGSDIGTPLDIPTPPDVDYARAESELEITLE-RARESIELLEGAENLLNVPV 60
Query: 190 QGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEV-----MLHILSNVLPILPVERPH 244
QG + +LR F+A +L Y IG AV E + ++ LP P
Sbjct: 61 QGSTHPDLRRFAAGEAAKLGGDIYPIG--AVVPLMEAYRYRDLARVILESRSALPPVEPI 118
Query: 245 YLMGVGTPDDILKSVSYGVDMFD 267
+L G G P +V+ G D+FD
Sbjct: 119 HLFGCGHPMLFALAVALGCDLFD 141
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component
regulatory system with RcsB and YojN; Provisional.
Length = 924
Score = 30.3 bits (69), Expect = 0.80
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 300 PLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWA-NLAYYQDL 344
PL A+S CSA+ + R L ESLA + W N + DL
Sbjct: 81 PLFADSDCSAMSNTWRGSL-------ESLAWFMRYWRDNFSAAYDL 119
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 223 PQEVMLHILSNVLPI 237
P+EV+ HI +N LP+
Sbjct: 522 PREVINHITANYLPL 536
>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional.
Length = 310
Score = 30.3 bits (69), Expect = 0.85
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 33 FMPVGTAGTVKAMYFDQVRDLGADVIL-GNAYHLMLRPGAERIARLGGL 80
F+P TA K ++R LGA+V++ G Y L A G L
Sbjct: 97 FVP-ETAPPAKV---ARLRALGAEVVVVGAEYADALEAAQAFAAETGAL 141
>gnl|CDD|182527 PRK10534, PRK10534, L-threonine aldolase; Provisional.
Length = 333
Score = 29.3 bits (66), Expect = 1.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 48 DQVRDLGADVILGNAYHLMLRPGAERIARLG 78
+Q+R+ GADV+ + L +R G E+ A LG
Sbjct: 261 EQLREAGADVMRQDTNMLFVRVGEEQAAALG 291
>gnl|CDD|183680 PRK12683, PRK12683, transcriptional regulator CysB-like protein;
Reviewed.
Length = 309
Score = 27.7 bits (62), Expect = 4.6
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 27 VIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLMLRPGAERIA-RLGGL----- 80
VIKT + +G G V AM +D RD G + + HL R+ R G
Sbjct: 229 VIKTYVELGMGV-GIVAAMAYDPQRDTGLVAL--DTDHL-FEANTTRVGLRRGAYLRGYA 284
Query: 81 HKFIRWFKPILT 92
++FI F P L+
Sbjct: 285 YRFIELFAPHLS 296
>gnl|CDD|182450 PRK10426, PRK10426, alpha-glucosidase; Provisional.
Length = 635
Score = 27.7 bits (62), Expect = 4.8
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 157 KELKRAMELSLRWAERSLVAF--------GNQPGK 183
+KR EL LRW E AF GN+PG
Sbjct: 467 FGMKRTKELLLRWCE--FSAFTPVMRTHEGNRPGD 499
>gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha.
Length = 808
Score = 27.6 bits (61), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 188 IVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLH 229
I+ G NIN RS R E+ + GY L+ +P +H
Sbjct: 670 IIIGSANINQRSMDGARDSEIAMGGYQPYHLSTRQPARGQIH 711
>gnl|CDD|161796 TIGR00272, DPH2, diphthamide biosynthesis protein 2. This protein
has been shown in Saccharomyces cerevisiae to be one of
several required for the modification of a particular
histidine residue of translation elongation factor 2 to
diphthamide. This modified site can then become the
target for ADP-ribosylation by diphtheria toxin.
Length = 496
Score = 27.2 bits (60), Expect = 7.7
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 198 RSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTPDDILK 257
R ++ G +G L V +E + + I + HYL VG P+
Sbjct: 271 RYKLVHVARDAGCIGIVVGTLGVRNTRETINEL---RKMIKTAGKKHYLFVVGKPNPAKL 327
Query: 258 SVSYGVDMF 266
+ +D+F
Sbjct: 328 ANFEDIDIF 336
>gnl|CDD|183432 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 26.8 bits (59), Expect = 8.3
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 251 TPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAESHCSAL 310
+ + + S++Y D+FD R RH R + R +D++ LDAE L
Sbjct: 2986 SAEGLGASLTYATDLFDARTVERLARHWQNLLR--GMVENPQRSVDELAMLDAEERGQLL 3043
Query: 311 RDYSRAYLHH 320
++ +
Sbjct: 3044 EAWNATAAEY 3053
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.140 0.420
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,508,463
Number of extensions: 437581
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 24
Length of query: 378
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 283
Effective length of database: 3,941,713
Effective search space: 1115504779
Effective search space used: 1115504779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)