RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780178|ref|YP_003064591.1| queuine
tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)



>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase,
           metal-binding, queuosine biosynthesis, tRNA processing,
           zinc; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A*
           1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A*
           1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A*
           1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
          Length = 386

 Score =  442 bits (1137), Expect = e-125
 Identities = 204/370 (55%), Positives = 262/370 (70%), Gaps = 4/370 (1%)

Query: 5   FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH 64
           F F++ A  G AR G I   RGVI+TPAFMPVGTA TVKA+  + VR  GAD+ILGN YH
Sbjct: 14  FSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYH 73

Query: 65  LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124
           LMLRPGAERIA+LGGLH F+ W +PILTDSGGFQVMSLS L    E+GV F+SH+DGS +
Sbjct: 74  LMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDGSRH 133

Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA 184
            +SPE S+ IQ+LLGSDI M  DEC   PA       +ME S+RWA+RS  AF ++  +A
Sbjct: 134 MLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQA 193

Query: 185 ----LFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240
               LFGI QG    NLR  SA+ L E+   GYA+GGLA GE Q+ M  +L   +P+LP 
Sbjct: 194 ENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPMLPD 253

Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300
           ++PHYLMGVG PDDI+ +V  G+DMFDCV+PTR+GR+G AFT  G IN+RNAR  +D++P
Sbjct: 254 DKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKP 313

Query: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360
           LD+E HC+  + +SRAY+HHL+R  E L  M+++  N+A+YQ LM++IR +I+E  F  F
Sbjct: 314 LDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQF 373

Query: 361 AMQTQENWKK 370
           A   +  +  
Sbjct: 374 AQDFRARYFA 383


>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel,
           riken structural genomics/proteomics initiative, RSGI;
           2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1
           d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
          Length = 582

 Score =  349 bits (897), Expect = 6e-97
 Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 38/365 (10%)

Query: 2   DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGN 61
           DK   F +KA  G+ R+G++      I+TPA MPV     +  +   ++  +G ++I+ N
Sbjct: 5   DKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITN 63

Query: 62  AYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDG 121
           +Y +       R A   G+H+ + +   I  DSG FQ+M    +                
Sbjct: 64  SYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSI---------------- 107

Query: 122 SLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP 181
               VS  E +  Q+ +G DI   LD      A  ++  + +E++L  A  +        
Sbjct: 108 ---EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEI-- 162

Query: 182 GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVL---PIL 238
              +   +QG    +LR ++A RL  ++ + + IGG+           ++  V+     L
Sbjct: 163 --PMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMAL 220

Query: 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDM 298
             +RP +L G G P     +V+ GVD+FD        +     T  G   L       D 
Sbjct: 221 RPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDEL----DY 276

Query: 299 RPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFV 358
            P      C     Y+   L  + +   +    +L+  NL   ++ +K ++ AI E    
Sbjct: 277 FPCS----CPVCSKYTPQELREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELW 329

Query: 359 DFAMQ 363
               +
Sbjct: 330 RLVDE 334


>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural
           genomics, joint center for structural genomics, JCSG;
           1.90A {Thermotoga maritima}
          Length = 381

 Score =  339 bits (871), Expect = 5e-94
 Identities = 160/369 (43%), Positives = 222/369 (60%), Gaps = 2/369 (0%)

Query: 6   HFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHL 65
            F +K   G ARLG +    G ++TP FMPVGT  +VK +    + + GA++IL N +HL
Sbjct: 14  EFEVKKTFGKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHL 73

Query: 66  MLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYR 125
           ML+PG E I    GLH F+ W +PILTDSGGFQV SL K   ID++GV FRS IDGS   
Sbjct: 74  MLKPGVEIIKLHRGLHNFMGWKRPILTDSGGFQVFSLPK-IRIDDEGVVFRSPIDGSKVF 132

Query: 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKAL 185
           ++PE S+ +Q  LGSDI M  D C    A+ +E+K A E + RWA RS  AF     +AL
Sbjct: 133 LNPEISMEVQIALGSDICMVFDHCPVPDADYEEVKEATERTYRWALRSKKAF-KTENQAL 191

Query: 186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY 245
           FGIVQGG   +LR  SA +L  +   GYAIGGL++GE + + L +    +  LP ++P Y
Sbjct: 192 FGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPEDKPRY 251

Query: 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAES 305
            MG G+P+ IL+ V  GVDMFD V PTR  RHG A T  GK+NL+ + +   + P+D   
Sbjct: 252 FMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTWNGKLNLKASYNKRSLEPVDERC 311

Query: 306 HCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365
            C   ++++R+Y+HHL    E L  ++L+  N+ +   LMKE+R +I    F +   +  
Sbjct: 312 GCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVV 371

Query: 366 ENWKKGDIP 374
           E +  G + 
Sbjct: 372 EVYSSGGVN 380


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 82/451 (18%), Positives = 141/451 (31%), Gaps = 193/451 (42%)

Query: 9   LKAV-SGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLML 67
            +AV  G+A+L  I           F   G  G     YF+++RD      L   YH+++
Sbjct: 146 FRAVGEGNAQLVAI-----------F---GGQGNTDD-YFEELRD------LYQTYHVLV 184

Query: 68  RP----GAERIARLG------------GLHKFIRWFK--------------PILTDSGGF 97
                  AE ++ L             GL   + W +              PI   S   
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI---S--C 238

Query: 98  QVMSLSKL------CSIDEQGV---RFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDE 148
            ++ + +L        +   G      RS++ G+        + H Q L+ +        
Sbjct: 239 PLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGA--------TGHSQGLVTA-------- 280

Query: 149 CLALPAED------KELKRAMELSLRW-AERSLVAFGNQPGKAL-FGIVQGGDNINLRSF 200
            +A+   D        +++A+ + L +   R   A+   P  +L   I++  D       
Sbjct: 281 -VAIAETDSWESFFVSVRKAITV-LFFIGVRCYEAY---PNTSLPPSILE--D------- 326

Query: 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI-------------LPVERPH-YL 246
           S E                V  P   ML I SN L               LP  +    +
Sbjct: 327 SLE------------NNEGVPSP---MLSI-SN-LTQEQVQDYVNKTNSHLPAGK-QVEI 368

Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNAR---HIDDMR---- 299
             V    +++  VS G        P ++  +GL       + LR A+    +D  R    
Sbjct: 369 SLVNGAKNLV--VS-G--------PPQS-LYGLN------LTLRKAKAPSGLDQSRIPFS 410

Query: 300 -----------PLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAY--Y----- 341
                      P+ +  H   L   S      L++ N S         ++    Y     
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-----KDIQIPVYDTFDG 465

Query: 342 QDLMKEIRSAIAEDCFVDFAMQTQE--NWKK 370
            DL + +  +I+E   VD     +    W+ 
Sbjct: 466 SDL-RVLSGSISER-IVD--CIIRLPVKWET 492



 Score = 35.3 bits (81), Expect = 0.025
 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 87/257 (33%)

Query: 87   FKPILTDSGGFQVMSLSKLCSID-------EQGVRFRSHIDGSLYRVSPEESVHIQNLLG 139
            FK    D+ GF ++ +     ++       E+G R R +    ++     E++       
Sbjct: 1653 FK----DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF-----ETI------- 1696

Query: 140  SDIQMQLDECLALPAEDKEL-KRAMELSLRWAERSLVA---FGNQPGKALFGIVQGGDNI 195
             D +++ ++        KE+ + +   + R +E+ L++   F  QP   L          
Sbjct: 1697 VDGKLKTEKIF------KEINEHSTSYTFR-SEKGLLSATQF-TQPALTL---------- 1738

Query: 196  NLRSFSAERLKELDLKGY-----AIGGLAVGEPQEVMLHILSNVLPILP-VERPHY---L 246
             +   + E LK    KG         G ++GE     L  L++V+ I   VE   Y    
Sbjct: 1739 -MEKAAFEDLKS---KGLIPADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRGMT 1792

Query: 247  MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT---------RFGK----------I 287
            M V  P D L   +YG      ++    GR   +F+         R GK           
Sbjct: 1793 MQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846

Query: 288  NLRNARHI--DDMRPLD 302
            N+ N +++   D+R LD
Sbjct: 1847 NVENQQYVAAGDLRALD 1863



 Score = 31.5 bits (71), Expect = 0.32
 Identities = 47/287 (16%), Positives = 82/287 (28%), Gaps = 134/287 (46%)

Query: 114 RFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERS 173
            F    + +L+R   E +  +  + G   Q   D+        +EL+   +L   +    
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYF------EELR---DLYQTY--HV 182

Query: 174 LVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL-----DLKGYAIGGLAVGEPQEVM- 227
           LV                GD I    FSAE L EL     D +     GL       ++ 
Sbjct: 183 LV----------------GDLI---KFSAETLSELIRTTLDAEKVFTQGL------NILE 217

Query: 228 -LH----------ILSNVLPILPVERP--------HY-----LMGVGTPDDILKSVSYGV 263
            L           +LS     +P+  P        HY     L+G  TP ++   +  G 
Sbjct: 218 WLENPSNTPDKDYLLS-----IPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLK-GA 270

Query: 264 DMFDCVMPTRAGRH--GLA----------FTRFGKINLRNARHIDDMRPL---DAESHCS 308
                      G H  GL           +  F   ++R A     +  L       + +
Sbjct: 271 ----------TG-HSQGLVTAVAIAETDSWESFFV-SVRKA-----ITVLFFIGVRCYEA 313

Query: 309 A--------------------------LRDYSRAYLH-HLLRVNESL 328
                                      + + ++  +  ++ + N  L
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.32
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 8/32 (25%)

Query: 155 EDKELKRAMELSLR-WAERSLVAFGNQPGKAL 185
           E + LK+ ++ SL+ +A+ S  A    P  A+
Sbjct: 18  EKQALKK-LQASLKLYADDS--A----PALAI 42



 Score = 28.0 bits (61), Expect = 3.6
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 4/24 (16%)

Query: 145 QLDECLALPAEDK----ELKRAME 164
           +L   L L A+D      +K  ME
Sbjct: 24  KLQASLKLYADDSAPALAIKATME 47


>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger
           esential for function;...; stable, non-interacting
           alpha-helices; NMR {Saccharomyces cerevisiae} SCOP:
           j.105.1.1 PDB: 1q0w_A
          Length = 81

 Score = 27.1 bits (60), Expect = 7.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)

Query: 155 EDKELKRAMELSLR 168
           E++ +++A+ELSL+
Sbjct: 11  EEELIRKAIELSLK 24



 Score = 26.8 bits (59), Expect = 9.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 155 EDKELKRAMELSLRWAERS 173
           ED +LK A++ SLR AE +
Sbjct: 54  EDPDLKAAIQESLREAEEA 72


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.323    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,386,932
Number of extensions: 161016
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 17
Length of query: 378
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 284
Effective length of database: 3,414,294
Effective search space: 969659496
Effective search space used: 969659496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)