RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (378 letters) >3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing, zinc; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Length = 386 Score = 442 bits (1137), Expect = e-125 Identities = 204/370 (55%), Positives = 262/370 (70%), Gaps = 4/370 (1%) Query: 5 FHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYH 64 F F++ A G AR G I RGVI+TPAFMPVGTA TVKA+ + VR GAD+ILGN YH Sbjct: 14 FSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYH 73 Query: 65 LMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLY 124 LMLRPGAERIA+LGGLH F+ W +PILTDSGGFQVMSLS L E+GV F+SH+DGS + Sbjct: 74 LMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDGSRH 133 Query: 125 RVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKA 184 +SPE S+ IQ+LLGSDI M DEC PA +ME S+RWA+RS AF ++ +A Sbjct: 134 MLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQA 193 Query: 185 ----LFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240 LFGI QG NLR SA+ L E+ GYA+GGLA GE Q+ M +L +P+LP Sbjct: 194 ENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPMLPD 253 Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300 ++PHYLMGVG PDDI+ +V G+DMFDCV+PTR+GR+G AFT G IN+RNAR +D++P Sbjct: 254 DKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKP 313 Query: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360 LD+E HC+ + +SRAY+HHL+R E L M+++ N+A+YQ LM++IR +I+E F F Sbjct: 314 LDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQF 373 Query: 361 AMQTQENWKK 370 A + + Sbjct: 374 AQDFRARYFA 383 >1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582 Score = 349 bits (897), Expect = 6e-97 Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 38/365 (10%) Query: 2 DKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGN 61 DK F +KA G+ R+G++ I+TPA MPV + + ++ +G ++I+ N Sbjct: 5 DKMLKFEIKARDGAGRIGKLEVNGKKIETPAIMPVVNPKQM-VVEPKELEKMGFEIIITN 63 Query: 62 AYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDG 121 +Y + R A G+H+ + + I DSG FQ+M + Sbjct: 64 SYIIYKDEELRRKALELGIHRMLDYNGIIEVDSGSFQLMKYGSI---------------- 107 Query: 122 SLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQP 181 VS E + Q+ +G DI LD A ++ + +E++L A + Sbjct: 108 ---EVSNREIIEFQHRIGVDIGTFLDIPTPPDAPREQAVKELEITLSRAREAEEIKEI-- 162 Query: 182 GKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVL---PIL 238 + +QG +LR ++A RL ++ + + IGG+ ++ V+ L Sbjct: 163 --PMNATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMAL 220 Query: 239 PVERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDM 298 +RP +L G G P +V+ GVD+FD + T G L D Sbjct: 221 RPDRPVHLFGAGHPIVFALAVAMGVDLFDSASYALYAKDDRYMTPEGTKRLDEL----DY 276 Query: 299 RPLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFV 358 P C Y+ L + + + +L+ NL ++ +K ++ AI E Sbjct: 277 FPCS----CPVCSKYTPQELREMPKEERT---RLLALHNLWVIKEEIKRVKQAIKEGELW 329 Query: 359 DFAMQ 363 + Sbjct: 330 RLVDE 334 >2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, structural genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Length = 381 Score = 339 bits (871), Expect = 5e-94 Identities = 160/369 (43%), Positives = 222/369 (60%), Gaps = 2/369 (0%) Query: 6 HFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHL 65 F +K G ARLG + G ++TP FMPVGT +VK + + + GA++IL N +HL Sbjct: 14 EFEVKKTFGKARLGVMKLHHGAVETPVFMPVGTNASVKLLTPRDLEEAGAEIILSNTFHL 73 Query: 66 MLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHIDGSLYR 125 ML+PG E I GLH F+ W +PILTDSGGFQV SL K ID++GV FRS IDGS Sbjct: 74 MLKPGVEIIKLHRGLHNFMGWKRPILTDSGGFQVFSLPK-IRIDDEGVVFRSPIDGSKVF 132 Query: 126 VSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQPGKAL 185 ++PE S+ +Q LGSDI M D C A+ +E+K A E + RWA RS AF +AL Sbjct: 133 LNPEISMEVQIALGSDICMVFDHCPVPDADYEEVKEATERTYRWALRSKKAF-KTENQAL 191 Query: 186 FGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHY 245 FGIVQGG +LR SA +L + GYAIGGL++GE + + L + + LP ++P Y Sbjct: 192 FGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPEDKPRY 251 Query: 246 LMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRPLDAES 305 MG G+P+ IL+ V GVDMFD V PTR RHG A T GK+NL+ + + + P+D Sbjct: 252 FMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTWNGKLNLKASYNKRSLEPVDERC 311 Query: 306 HCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDFAMQTQ 365 C ++++R+Y+HHL E L ++L+ N+ + LMKE+R +I F + + Sbjct: 312 GCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVV 371 Query: 366 ENWKKGDIP 374 E + G + Sbjct: 372 EVYSSGGVN 380 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 5e-05 Identities = 82/451 (18%), Positives = 141/451 (31%), Gaps = 193/451 (42%) Query: 9 LKAV-SGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILGNAYHLML 67 +AV G+A+L I F G G YF+++RD L YH+++ Sbjct: 146 FRAVGEGNAQLVAI-----------F---GGQGNTDD-YFEELRD------LYQTYHVLV 184 Query: 68 RP----GAERIARLG------------GLHKFIRWFK--------------PILTDSGGF 97 AE ++ L GL + W + PI S Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPI---S--C 238 Query: 98 QVMSLSKL------CSIDEQGV---RFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDE 148 ++ + +L + G RS++ G+ + H Q L+ + Sbjct: 239 PLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGA--------TGHSQGLVTA-------- 280 Query: 149 CLALPAED------KELKRAMELSLRW-AERSLVAFGNQPGKAL-FGIVQGGDNINLRSF 200 +A+ D +++A+ + L + R A+ P +L I++ D Sbjct: 281 -VAIAETDSWESFFVSVRKAITV-LFFIGVRCYEAY---PNTSLPPSILE--D------- 326 Query: 201 SAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPI-------------LPVERPH-YL 246 S E V P ML I SN L LP + + Sbjct: 327 SLE------------NNEGVPSP---MLSI-SN-LTQEQVQDYVNKTNSHLPAGK-QVEI 368 Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNAR---HIDDMR---- 299 V +++ VS G P ++ +GL + LR A+ +D R Sbjct: 369 SLVNGAKNLV--VS-G--------PPQS-LYGLN------LTLRKAKAPSGLDQSRIPFS 410 Query: 300 -----------PLDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAY--Y----- 341 P+ + H L S L++ N S ++ Y Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-----KDIQIPVYDTFDG 465 Query: 342 QDLMKEIRSAIAEDCFVDFAMQTQE--NWKK 370 DL + + +I+E VD + W+ Sbjct: 466 SDL-RVLSGSISER-IVD--CIIRLPVKWET 492 Score = 35.3 bits (81), Expect = 0.025 Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 87/257 (33%) Query: 87 FKPILTDSGGFQVMSLSKLCSID-------EQGVRFRSHIDGSLYRVSPEESVHIQNLLG 139 FK D+ GF ++ + ++ E+G R R + ++ E++ Sbjct: 1653 FK----DTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF-----ETI------- 1696 Query: 140 SDIQMQLDECLALPAEDKEL-KRAMELSLRWAERSLVA---FGNQPGKALFGIVQGGDNI 195 D +++ ++ KE+ + + + R +E+ L++ F QP L Sbjct: 1697 VDGKLKTEKIF------KEINEHSTSYTFR-SEKGLLSATQF-TQPALTL---------- 1738 Query: 196 NLRSFSAERLKELDLKGY-----AIGGLAVGEPQEVMLHILSNVLPILP-VERPHY---L 246 + + E LK KG G ++GE L L++V+ I VE Y Sbjct: 1739 -MEKAAFEDLKS---KGLIPADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRGMT 1792 Query: 247 MGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFT---------RFGK----------I 287 M V P D L +YG ++ GR +F+ R GK Sbjct: 1793 MQVAVPRDELGRSNYG------MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846 Query: 288 NLRNARHI--DDMRPLD 302 N+ N +++ D+R LD Sbjct: 1847 NVENQQYVAAGDLRALD 1863 Score = 31.5 bits (71), Expect = 0.32 Identities = 47/287 (16%), Positives = 82/287 (28%), Gaps = 134/287 (46%) Query: 114 RFRSHIDGSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERS 173 F + +L+R E + + + G Q D+ +EL+ +L + Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGG--QGNTDDYF------EELR---DLYQTY--HV 182 Query: 174 LVAFGNQPGKALFGIVQGGDNINLRSFSAERLKEL-----DLKGYAIGGLAVGEPQEVM- 227 LV GD I FSAE L EL D + GL ++ Sbjct: 183 LV----------------GDLI---KFSAETLSELIRTTLDAEKVFTQGL------NILE 217 Query: 228 -LH----------ILSNVLPILPVERP--------HY-----LMGVGTPDDILKSVSYGV 263 L +LS +P+ P HY L+G TP ++ + G Sbjct: 218 WLENPSNTPDKDYLLS-----IPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLK-GA 270 Query: 264 DMFDCVMPTRAGRH--GLA----------FTRFGKINLRNARHIDDMRPL---DAESHCS 308 G H GL + F ++R A + L + + Sbjct: 271 ----------TG-HSQGLVTAVAIAETDSWESFFV-SVRKA-----ITVLFFIGVRCYEA 313 Query: 309 A--------------------------LRDYSRAYLH-HLLRVNESL 328 + + ++ + ++ + N L Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.32 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 8/32 (25%) Query: 155 EDKELKRAMELSLR-WAERSLVAFGNQPGKAL 185 E + LK+ ++ SL+ +A+ S A P A+ Sbjct: 18 EKQALKK-LQASLKLYADDS--A----PALAI 42 Score = 28.0 bits (61), Expect = 3.6 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 4/24 (16%) Query: 145 QLDECLALPAEDK----ELKRAME 164 +L L L A+D +K ME Sbjct: 24 KLQASLKLYADDSAPALAIKATME 47 >1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A Length = 81 Score = 27.1 bits (60), Expect = 7.0 Identities = 6/14 (42%), Positives = 13/14 (92%) Query: 155 EDKELKRAMELSLR 168 E++ +++A+ELSL+ Sbjct: 11 EEELIRKAIELSLK 24 Score = 26.8 bits (59), Expect = 9.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 155 EDKELKRAMELSLRWAERS 173 ED +LK A++ SLR AE + Sbjct: 54 EDPDLKAAIQESLREAEEA 72 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.140 0.420 Gapped Lambda K H 0.267 0.0507 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,386,932 Number of extensions: 161016 Number of successful extensions: 420 Number of sequences better than 10.0: 1 Number of HSP's gapped: 407 Number of HSP's successfully gapped: 17 Length of query: 378 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 284 Effective length of database: 3,414,294 Effective search space: 969659496 Effective search space used: 969659496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.3 bits)