BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780178|ref|YP_003064591.1| queuine
tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (378 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 378

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/378 (100%), Positives = 378/378 (100%)

Query: 1   MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60
           MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG
Sbjct: 1   MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60

Query: 61  NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID 120
           NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID
Sbjct: 61  NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID 120

Query: 121 GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ 180
           GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ
Sbjct: 121 GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ 180

Query: 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240
           PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV
Sbjct: 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240

Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300
           ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP
Sbjct: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300

Query: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360
           LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF
Sbjct: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360

Query: 361 AMQTQENWKKGDIPPIFT 378
           AMQTQENWKKGDIPPIFT
Sbjct: 361 AMQTQENWKKGDIPPIFT 378


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 27.3 bits (59), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 273 RAGRHGLAFTRFGKINLRNARHIDDMRPL 301
           RAGRHG AFT   K ++   +HID +  L
Sbjct: 338 RAGRHGKAFTLVAKEDI---KHIDAIEKL 363


>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 24.6 bits (52), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 308 SALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED 355
           S LR ++R    +L +  ES++ +++ WA + Y +  +KEI + + E+
Sbjct: 89  SILRTHTRDQATNLAKRLESISSIVVDWA-MRYGKPSVKEIINNLREE 135


>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 24.3 bits (51), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)

Query: 204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTP 252
           RL EL        GL V  P     +  S + PILP+E  H L+   +P
Sbjct: 146 RLPEL-----VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189


>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 609

 Score = 23.1 bits (48), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 48  DQVRDLGADVILGNA 62
           +++R LG DVI GNA
Sbjct: 485 EELRSLGIDVIYGNA 499


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,273
Number of Sequences: 1233
Number of extensions: 9766
Number of successful extensions: 22
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 378
length of database: 328,796
effective HSP length: 75
effective length of query: 303
effective length of database: 236,321
effective search space: 71605263
effective search space used: 71605263
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)