BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] (378 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780178|ref|YP_003064591.1| queuine tRNA-ribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 378 Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/378 (100%), Positives = 378/378 (100%) Query: 1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG Sbjct: 1 MDKNFHFNLKAVSGSARLGEIITPRGVIKTPAFMPVGTAGTVKAMYFDQVRDLGADVILG 60 Query: 61 NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID 120 NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID Sbjct: 61 NAYHLMLRPGAERIARLGGLHKFIRWFKPILTDSGGFQVMSLSKLCSIDEQGVRFRSHID 120 Query: 121 GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ 180 GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ Sbjct: 121 GSLYRVSPEESVHIQNLLGSDIQMQLDECLALPAEDKELKRAMELSLRWAERSLVAFGNQ 180 Query: 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV Sbjct: 181 PGKALFGIVQGGDNINLRSFSAERLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPV 240 Query: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP Sbjct: 241 ERPHYLMGVGTPDDILKSVSYGVDMFDCVMPTRAGRHGLAFTRFGKINLRNARHIDDMRP 300 Query: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF Sbjct: 301 LDAESHCSALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAEDCFVDF 360 Query: 361 AMQTQENWKKGDIPPIFT 378 AMQTQENWKKGDIPPIFT Sbjct: 361 AMQTQENWKKGDIPPIFT 378 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 27.3 bits (59), Expect = 0.48, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 3/29 (10%) Query: 273 RAGRHGLAFTRFGKINLRNARHIDDMRPL 301 RAGRHG AFT K ++ +HID + L Sbjct: 338 RAGRHGKAFTLVAKEDI---KHIDAIEKL 363 >gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 24.6 bits (52), Expect = 2.6, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 308 SALRDYSRAYLHHLLRVNESLAGMILSWANLAYYQDLMKEIRSAIAED 355 S LR ++R +L + ES++ +++ WA + Y + +KEI + + E+ Sbjct: 89 SILRTHTRDQATNLAKRLESISSIVVDWA-MRYGKPSVKEIINNLREE 135 >gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 264 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Query: 204 RLKELDLKGYAIGGLAVGEPQEVMLHILSNVLPILPVERPHYLMGVGTP 252 RL EL GL V P + S + PILP+E H L+ +P Sbjct: 146 RLPEL-----VCDGLVVSTPIGSTAYNFSALGPILPLESRHLLLTPVSP 189 >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 23.1 bits (48), Expect = 7.3, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 48 DQVRDLGADVILGNA 62 +++R LG DVI GNA Sbjct: 485 EELRSLGIDVIYGNA 499 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.140 0.420 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 240,273 Number of Sequences: 1233 Number of extensions: 9766 Number of successful extensions: 22 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 6 length of query: 378 length of database: 328,796 effective HSP length: 75 effective length of query: 303 effective length of database: 236,321 effective search space: 71605263 effective search space used: 71605263 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)