Query gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 23 13:38:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780179.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13454 F0F1 ATP synthase sub 58.1 5.2 0.00013 20.8 1.4 20 47-66 36-55 (181)
2 PRK09174 F0F1 ATP synthase sub 55.1 6.9 0.00018 20.2 1.6 20 47-66 58-77 (204)
3 PRK06569 F0F1 ATP synthase sub 54.1 7.3 0.00019 20.0 1.6 20 47-66 15-34 (157)
4 KOG2948 consensus 43.7 14 0.00035 18.6 1.7 50 5-56 68-120 (327)
5 pfam06015 Chordopox_A30L Chord 26.9 26 0.00067 17.1 0.9 21 11-31 1-21 (71)
6 pfam03690 UPF0160 Uncharacteri 26.6 60 0.0015 15.2 2.7 44 19-62 76-121 (315)
7 PHA01078 putative upper collar 18.3 35 0.0009 16.4 0.1 20 9-28 136-155 (249)
8 PRK08354 putative aminotransfe 16.8 43 0.0011 16.0 0.2 13 9-21 5-17 (312)
9 KOG0668 consensus 15.8 53 0.0013 15.5 0.5 18 15-32 134-151 (338)
10 TIGR02896 spore_III_AF stage I 15.0 66 0.0017 15.0 0.8 29 47-75 7-35 (113)
No 1
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=58.09 E-value=5.2 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.560 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHCCCCH
Q ss_conf 49999999999974000337
Q gi|254780179|r 47 LIPVVFSILYFTISKSIFPL 66 (75)
Q Consensus 47 lipvvfsilyftisksifpl 66 (75)
..-|.|.||||.++|-++|-
T Consensus 36 Wl~i~F~ily~vl~k~~lPr 55 (181)
T PRK13454 36 WLLVTLVAIYFVLTRVALPR 55 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999988
No 2
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=55.08 E-value=6.9 Score=20.15 Aligned_cols=20 Identities=25% Similarity=0.723 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHCCCCH
Q ss_conf 49999999999974000337
Q gi|254780179|r 47 LIPVVFSILYFTISKSIFPL 66 (75)
Q Consensus 47 lipvvfsilyftisksifpl 66 (75)
..-+.|++|||-++|-+.|-
T Consensus 58 WL~I~F~~lY~~~sk~~lPr 77 (204)
T PRK09174 58 WLAITFGLFYLFLSRVILPR 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997603
No 3
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=54.07 E-value=7.3 Score=20.03 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHCCCCH
Q ss_conf 49999999999974000337
Q gi|254780179|r 47 LIPVVFSILYFTISKSIFPL 66 (75)
Q Consensus 47 lipvvfsilyftisksifpl 66 (75)
..-+.|++||+.+||-+.|-
T Consensus 15 WL~itF~~ly~~~sk~~lPr 34 (157)
T PRK06569 15 WLIVTFGLLYIFVYKFITPK 34 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998604
No 4
>KOG2948 consensus
Probab=43.67 E-value=14 Score=18.58 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=25.6
Q ss_pred ECCCCCCHHHCCCCHHHHHH--HHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHH
Q ss_conf 32655301201115025666--433544323445788987-52014999999999
Q gi|254780179|r 5 HQNSHKEEEIIDFNSNHLLS--SLSYCHYGKRLSTQYKTL-RKGILIPVVFSILY 56 (75)
Q Consensus 5 hqnshkeeeiidfnsnhlls--slsychygkrlstqyktl-rkgilipvvfsily 56 (75)
||.+-.|.---.| +--|| .|-|||||+++-.++-.. +..--++.+|--+|
T Consensus 68 HQr~F~ETfs~~~--~tKLSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kvY 120 (327)
T KOG2948 68 HQRGFFETFSPKY--KTKLSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKVY 120 (327)
T ss_pred HHHHHHHHCCCCC--CEEECCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 3421455318764--3033336400897419999998264578167999999999
No 5
>pfam06015 Chordopox_A30L Chordopoxvirus A30L protein. This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other.
Probab=26.89 E-value=26 Score=17.09 Aligned_cols=21 Identities=52% Similarity=0.536 Sum_probs=17.0
Q ss_pred CHHHCCCCHHHHHHHHHHHHH
Q ss_conf 012011150256664335443
Q gi|254780179|r 11 EEEIIDFNSNHLLSSLSYCHY 31 (75)
Q Consensus 11 eeeiidfnsnhllsslsychy 31 (75)
||.|-.-|-||||+.||-|.-
T Consensus 1 ~eDInEsnf~HlL~~Lsn~~~ 21 (71)
T pfam06015 1 EEDINESNFNHLLSNLSNNKD 21 (71)
T ss_pred CCCHHHHHHHHHHHHHHCCCC
T ss_conf 953108889999999726897
No 6
>pfam03690 UPF0160 Uncharacterized protein family (UPF0160). This family of proteins contains a large number of metal binding residues. The patterns are suggestive of a phosphoesterase function. The conserved DHH motif may mean this family is related to pfam01368.
Probab=26.59 E-value=60 Score=15.24 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=24.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 0256664--3354432344578898752014999999999997400
Q gi|254780179|r 19 SNHLLSS--LSYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKS 62 (75)
Q Consensus 19 snhllss--lsychygkrlstqyktlrkgilipvvfsilyftisks 62 (75)
.+..||| |-|.|||++.-.+.-..-..-.+..++.-+|-..-.+
T Consensus 76 ~~~~lSSaGLVy~hfG~~ii~~~~~~~~~e~i~~l~~kiy~~fi~~ 121 (315)
T pfam03690 76 DGTKLSSAGLVYKHFGKEIIRQLLKLLDEEDVELLYDKVYKSFVEE 121 (315)
T ss_pred CCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9986322133799988999998526688789999999999988434
No 7
>PHA01078 putative upper collar protein
Probab=18.30 E-value=35 Score=16.42 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=15.3
Q ss_pred CCCHHHCCCCHHHHHHHHHH
Q ss_conf 53012011150256664335
Q gi|254780179|r 9 HKEEEIIDFNSNHLLSSLSY 28 (75)
Q Consensus 9 hkeeeiidfnsnhllsslsy 28 (75)
..||.|||||+|...+.|.-
T Consensus 136 ~~E~~Ii~~~~~S~i~~L~E 155 (249)
T PHA01078 136 NAEDDIIDLTSNSVIPALTE 155 (249)
T ss_pred CCHHHEEECCCCCCCHHHHH
T ss_conf 81774255346640220188
No 8
>PRK08354 putative aminotransferase; Provisional
Probab=16.82 E-value=43 Score=15.97 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=9.3
Q ss_pred CCCHHHCCCCHHH
Q ss_conf 5301201115025
Q gi|254780179|r 9 HKEEEIIDFNSNH 21 (75)
Q Consensus 9 hkeeeiidfnsnh 21 (75)
-++|+||||++|-
T Consensus 5 ~~~~~iidfssN~ 17 (312)
T PRK08354 5 IRREGLIDFSASV 17 (312)
T ss_pred CCHHHCEEECCCC
T ss_conf 7866416607999
No 9
>KOG0668 consensus
Probab=15.80 E-value=53 Score=15.52 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=11.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 111502566643354432
Q gi|254780179|r 15 IDFNSNHLLSSLSYCHYG 32 (75)
Q Consensus 15 idfnsnhllsslsychyg 32 (75)
|.|-+-.||+.|+|||--
T Consensus 134 IryY~~elLkALdyCHS~ 151 (338)
T KOG0668 134 IRYYIYELLKALDYCHSM 151 (338)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999998688751
No 10
>TIGR02896 spore_III_AF stage III sporulation protein AF; InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved. .
Probab=15.02 E-value=66 Score=15.00 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 49999999999974000337888873179
Q gi|254780179|r 47 LIPVVFSILYFTISKSIFPLSHFKKHYRF 75 (75)
Q Consensus 47 lipvvfsilyftisksifplshfkkhyrf 75 (75)
..-+++-++.+||-.=+.|.|.+||+-||
T Consensus 7 v~~i~~~~llat~~e~LLP~~~lkKYvk~ 35 (113)
T TIGR02896 7 VTNIIVLILLATILEMLLPNSSLKKYVKF 35 (113)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999999999997679985179999
Done!