Query gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 75 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Mon May 23 02:33:53 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780179.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1v54_D Cytochrome C oxidase s 13.1 1.1E+02 0.0032 13.5 2.5 42 21-62 57-101 (107) 2 >1m22_A Peptide amidase, PAM; 11.1 56 0.0017 15.0 -0.2 21 8-28 30-50 (83) 3 >1gpp_A Endonuclease PI-SCEI; 9.4 94 0.0028 13.8 0.5 28 7-34 98-125 (174) 4 >2b9w_A Putative aminooxidase; 8.6 1.4E+02 0.0042 12.9 1.1 30 5-39 160-189 (191) 5 >1kob_A Twitchin; kinase, intr 6.6 1.6E+02 0.0047 12.7 0.6 19 12-30 10-28 (249) 6 >2ong_A 4S-limonene synthase; 6.5 1.7E+02 0.005 12.5 0.7 29 12-40 111-139 (167) 7 >3bz1_M PSII-M, photosystem II 6.1 2.1E+02 0.0063 12.0 2.1 17 46-62 15-31 (36) 8 >1sqj_A OXG-RCBH, oligoxyloglu 5.9 1.1E+02 0.0031 13.6 -0.7 27 12-38 37-63 (77) 9 >2a2a_A Death-associated prote 5.5 1.5E+02 0.0045 12.7 -0.0 20 11-30 16-35 (224) 10 >3b8e_G Na+/K+ ATPase gamma su 5.5 86 0.0025 14.1 -1.3 10 39-48 1-10 (29) No 1 >>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:1-107) Probab=13.06 E-value=1.1e+02 Score=13.54 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.5 Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHC Q ss_conf 566643354432344---578898752014999999999997400 Q gi|254780179|r 21 HLLSSLSYCHYGKRL---STQYKTLRKGILIPVVFSILYFTISKS 62 (75) Q Consensus 21 hllsslsychygkrl---stqyktlrkgilipvvfsilyftisks 62 (75) -.+--+|||..|.|. +-+.|+.-.|.++-+.||++.|-..+. T Consensus 57 kAlYrisFg~t~pe~~~~~gewk~v~g~v~~~i~~s~~lf~~~r~ 101 (107) T 1v54_D 57 VELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 101 (107) T ss_dssp HHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999854644546489996456899999999999999999999 No 2 >>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} (A:316-398) Probab=11.05 E-value=56 Score=15.04 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=15.1 Q ss_pred CCCCHHHCCCCHHHHHHHHHH Q ss_conf 553012011150256664335 Q gi|254780179|r 8 SHKEEEIIDFNSNHLLSSLSY 28 (75) Q Consensus 8 shkeeeiidfnsnhllsslsy 28 (75) -+--++||.||..|--..+.| T Consensus 30 vrSLadlIaFN~~h~~~~l~~ 50 (83) T 1m22_A 30 LRSLADLIAFNQAHSKQELGL 50 (83) T ss_dssp CCSHHHHHHHHHHTHHHHSSS T ss_pred CCHHHHHHHHHHHHHHCCCCC T ss_conf 200678888887532001221 No 3 >>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} (A:1-97,A:161-237) Probab=9.42 E-value=94 Score=13.84 Aligned_cols=28 Identities=21% Similarity=-0.051 Sum_probs=22.0 Q ss_pred CCCCCHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 6553012011150256664335443234 Q gi|254780179|r 7 NSHKEEEIIDFNSNHLLSSLSYCHYGKR 34 (75) Q Consensus 7 nshkeeeiidfnsnhllsslsychygkr 34 (75) ..+...-.|...+.-|++.||||--++. T Consensus 98 ~~~~~~y~~~~~~~~l~~vl~~~~~~~~ 125 (174) T 1gpp_A 98 NKAYFEWTIEARDLSLLGSHVRKATYQT 125 (174) T ss_dssp SSSEEEEEEEGGGGGGSCHHHHHHCBEE T ss_pred CCCEEEEEEEECHHHHHHHHHHHHHHEE T ss_conf 5313899875122566766665541100 No 4 >>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424) Probab=8.63 E-value=1.4e+02 Score=12.93 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=19.1 Q ss_pred ECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 32655301201115025666433544323445788 Q gi|254780179|r 5 HQNSHKEEEIIDFNSNHLLSSLSYCHYGKRLSTQY 39 (75) Q Consensus 5 hqnshkeeeiidfnsnhllsslsychygkrlstqy 39 (75) ..|.--..||..|..- -..|||.|.|-|.+ T Consensus 160 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 189 (191) T 2b9w_A 160 RRNTFYAGEIMSFGNF-----DEVCHYSKDLVTRF 189 (191) T ss_dssp GGGEEECSGGGSCSSH-----HHHHHHHHHHHHHH T ss_pred CCCEEEECCCCCCCHH-----HHHHHHHHHHHHHH T ss_conf 9976983211256738-----99999999999986 No 5 >>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} (A:139-387) Probab=6.59 E-value=1.6e+02 Score=12.67 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=7.7 Q ss_pred HHHCCCCHHHHHHHHHHHH Q ss_conf 1201115025666433544 Q gi|254780179|r 12 EEIIDFNSNHLLSSLSYCH 30 (75) Q Consensus 12 eeiidfnsnhllsslsych 30 (75) |+.+-.-...+++.|.||| T Consensus 10 e~~~~~~~~qll~gl~yLH 28 (249) T 1kob_A 10 EAEVINYMRQACEGLKHMH 28 (249) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999 No 6 >>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* (A:49-215) Probab=6.50 E-value=1.7e+02 Score=12.52 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=20.8 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 12011150256664335443234457889 Q gi|254780179|r 12 EEIIDFNSNHLLSSLSYCHYGKRLSTQYK 40 (75) Q Consensus 12 eeiidfnsnhllsslsychygkrlstqyk 40 (75) +|+..|.+.||-+.++.++..+.++.+.+ T Consensus 111 deA~~Ft~~~L~~~~~~~~~~~~l~~~V~ 139 (167) T 2ong_A 111 ESAREFATKFLEEKVNEGGVDGDLLTRIA 139 (167) T ss_dssp HHHHHHHHHHHHHHHHSSCSSSHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 99999999999998715899966999999 No 7 >>3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3a0b_M* 3a0h_M* (M:) Probab=6.07 E-value=2.1e+02 Score=11.99 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=11.1 Q ss_pred CHHHHHHHHHHHHHHHC Q ss_conf 14999999999997400 Q gi|254780179|r 46 ILIPVVFSILYFTISKS 62 (75) Q Consensus 46 ilipvvfsilyftisks 62 (75) +|+|.||-|..+--+.| T Consensus 15 vlvPtvFLiiLyiqt~s 31 (36) T 3bz1_M 15 VLVPSVFLIILYVQTES 31 (36) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHEEEEECC T ss_conf 99978876530576144 No 8 >>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} (A:11-16,A:370-440) Probab=5.85 E-value=1.1e+02 Score=13.59 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=17.3 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 120111502566643354432344578 Q gi|254780179|r 12 EEIIDFNSNHLLSSLSYCHYGKRLSTQ 38 (75) Q Consensus 12 eeiidfnsnhllsslsychygkrlstq 38 (75) -||--|||||.|-.-.+--||-+--|. T Consensus 37 l~IDPfDSdh~lYGTGatiygt~dLt~ 63 (77) T 1sqj_A 37 VLIDPFNPEHLMYGTGATIWATDTLSR 63 (77) T ss_dssp EEECTTCTTCEEEECSSCEEEESCGGG T ss_pred EEECCCCCCEEEEEECCCEEEECCCCC T ss_conf 560788897289884242584024662 No 9 >>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A (A:98-321) Probab=5.49 E-value=1.5e+02 Score=12.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=7.9 Q ss_pred CHHHCCCCHHHHHHHHHHHH Q ss_conf 01201115025666433544 Q gi|254780179|r 11 EEEIIDFNSNHLLSSLSYCH 30 (75) Q Consensus 11 eeeiidfnsnhllsslsych 30 (75) .|+.+-+-...+++.|.||| T Consensus 16 ~e~~~~~i~~qil~al~ylH 35 (224) T 2a2a_A 16 SEEEATSFIKQILDGVNYLH 35 (224) T ss_dssp EHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 09999999999887778898 No 10 >>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} (G:) Probab=5.45 E-value=86 Score=14.05 Aligned_cols=10 Identities=60% Similarity=0.963 Sum_probs=0.0 Q ss_pred HHHHHHCCHH Q ss_conf 8987520149 Q gi|254780179|r 39 YKTLRKGILI 48 (75) Q Consensus 39 yktlrkgili 48 (75) |.|.|+|-|| T Consensus 1 yetvr~ggli 10 (29) T 3b8e_G 1 YETVRNGGLI 10 (29) T ss_dssp CTTTSTTSSG T ss_pred CCCEECCCEE T ss_conf 9443338674 Done!