Query         gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Mon May 23 02:33:53 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780179.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1v54_D Cytochrome C oxidase s  13.1 1.1E+02  0.0032   13.5   2.5   42   21-62     57-101 (107)
  2 >1m22_A Peptide amidase, PAM;   11.1      56  0.0017   15.0  -0.2   21    8-28     30-50  (83)
  3 >1gpp_A Endonuclease PI-SCEI;    9.4      94  0.0028   13.8   0.5   28    7-34     98-125 (174)
  4 >2b9w_A Putative aminooxidase;   8.6 1.4E+02  0.0042   12.9   1.1   30    5-39    160-189 (191)
  5 >1kob_A Twitchin; kinase, intr   6.6 1.6E+02  0.0047   12.7   0.6   19   12-30     10-28  (249)
  6 >2ong_A 4S-limonene synthase;    6.5 1.7E+02   0.005   12.5   0.7   29   12-40    111-139 (167)
  7 >3bz1_M PSII-M, photosystem II   6.1 2.1E+02  0.0063   12.0   2.1   17   46-62     15-31  (36)
  8 >1sqj_A OXG-RCBH, oligoxyloglu   5.9 1.1E+02  0.0031   13.6  -0.7   27   12-38     37-63  (77)
  9 >2a2a_A Death-associated prote   5.5 1.5E+02  0.0045   12.7  -0.0   20   11-30     16-35  (224)
 10 >3b8e_G Na+/K+ ATPase gamma su   5.5      86  0.0025   14.1  -1.3   10   39-48      1-10  (29)

No 1  
>>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:1-107)
Probab=13.06  E-value=1.1e+02  Score=13.54  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf             566643354432344---578898752014999999999997400
Q gi|254780179|r   21 HLLSSLSYCHYGKRL---STQYKTLRKGILIPVVFSILYFTISKS   62 (75)
Q Consensus        21 hllsslsychygkrl---stqyktlrkgilipvvfsilyftisks   62 (75)
                      -.+--+|||..|.|.   +-+.|+.-.|.++-+.||++.|-..+.
T Consensus        57 kAlYrisFg~t~pe~~~~~gewk~v~g~v~~~i~~s~~lf~~~r~  101 (107)
T 1v54_D           57 VELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH  101 (107)
T ss_dssp             HHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999854644546489996456899999999999999999999


No 2  
>>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} (A:316-398)
Probab=11.05  E-value=56  Score=15.04  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=15.1

Q ss_pred             CCCCHHHCCCCHHHHHHHHHH
Q ss_conf             553012011150256664335
Q gi|254780179|r    8 SHKEEEIIDFNSNHLLSSLSY   28 (75)
Q Consensus         8 shkeeeiidfnsnhllsslsy   28 (75)
                      -+--++||.||..|--..+.|
T Consensus        30 vrSLadlIaFN~~h~~~~l~~   50 (83)
T 1m22_A           30 LRSLADLIAFNQAHSKQELGL   50 (83)
T ss_dssp             CCSHHHHHHHHHHTHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHCCCCC
T ss_conf             200678888887532001221


No 3  
>>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} (A:1-97,A:161-237)
Probab=9.42  E-value=94  Score=13.84  Aligned_cols=28  Identities=21%  Similarity=-0.051  Sum_probs=22.0

Q ss_pred             CCCCCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             6553012011150256664335443234
Q gi|254780179|r    7 NSHKEEEIIDFNSNHLLSSLSYCHYGKR   34 (75)
Q Consensus         7 nshkeeeiidfnsnhllsslsychygkr   34 (75)
                      ..+...-.|...+.-|++.||||--++.
T Consensus        98 ~~~~~~y~~~~~~~~l~~vl~~~~~~~~  125 (174)
T 1gpp_A           98 NKAYFEWTIEARDLSLLGSHVRKATYQT  125 (174)
T ss_dssp             SSSEEEEEEEGGGGGGSCHHHHHHCBEE
T ss_pred             CCCEEEEEEEECHHHHHHHHHHHHHHEE
T ss_conf             5313899875122566766665541100


No 4  
>>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424)
Probab=8.63  E-value=1.4e+02  Score=12.93  Aligned_cols=30  Identities=33%  Similarity=0.623  Sum_probs=19.1

Q ss_pred             ECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             32655301201115025666433544323445788
Q gi|254780179|r    5 HQNSHKEEEIIDFNSNHLLSSLSYCHYGKRLSTQY   39 (75)
Q Consensus         5 hqnshkeeeiidfnsnhllsslsychygkrlstqy   39 (75)
                      ..|.--..||..|..-     -..|||.|.|-|.+
T Consensus       160 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  189 (191)
T 2b9w_A          160 RRNTFYAGEIMSFGNF-----DEVCHYSKDLVTRF  189 (191)
T ss_dssp             GGGEEECSGGGSCSSH-----HHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCHH-----HHHHHHHHHHHHHH
T ss_conf             9976983211256738-----99999999999986


No 5  
>>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} (A:139-387)
Probab=6.59  E-value=1.6e+02  Score=12.67  Aligned_cols=19  Identities=16%  Similarity=0.015  Sum_probs=7.7

Q ss_pred             HHHCCCCHHHHHHHHHHHH
Q ss_conf             1201115025666433544
Q gi|254780179|r   12 EEIIDFNSNHLLSSLSYCH   30 (75)
Q Consensus        12 eeiidfnsnhllsslsych   30 (75)
                      |+.+-.-...+++.|.|||
T Consensus        10 e~~~~~~~~qll~gl~yLH   28 (249)
T 1kob_A           10 EAEVINYMRQACEGLKHMH   28 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999


No 6  
>>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* (A:49-215)
Probab=6.50  E-value=1.7e+02  Score=12.52  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=20.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             12011150256664335443234457889
Q gi|254780179|r   12 EEIIDFNSNHLLSSLSYCHYGKRLSTQYK   40 (75)
Q Consensus        12 eeiidfnsnhllsslsychygkrlstqyk   40 (75)
                      +|+..|.+.||-+.++.++..+.++.+.+
T Consensus       111 deA~~Ft~~~L~~~~~~~~~~~~l~~~V~  139 (167)
T 2ong_A          111 ESAREFATKFLEEKVNEGGVDGDLLTRIA  139 (167)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             99999999999998715899966999999


No 7  
>>3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3a0b_M* 3a0h_M* (M:)
Probab=6.07  E-value=2.1e+02  Score=11.99  Aligned_cols=17  Identities=35%  Similarity=0.784  Sum_probs=11.1

Q ss_pred             CHHHHHHHHHHHHHHHC
Q ss_conf             14999999999997400
Q gi|254780179|r   46 ILIPVVFSILYFTISKS   62 (75)
Q Consensus        46 ilipvvfsilyftisks   62 (75)
                      +|+|.||-|..+--+.|
T Consensus        15 vlvPtvFLiiLyiqt~s   31 (36)
T 3bz1_M           15 VLVPSVFLIILYVQTES   31 (36)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHEEEEECC
T ss_conf             99978876530576144


No 8  
>>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} (A:11-16,A:370-440)
Probab=5.85  E-value=1.1e+02  Score=13.59  Aligned_cols=27  Identities=19%  Similarity=0.204  Sum_probs=17.3

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             120111502566643354432344578
Q gi|254780179|r   12 EEIIDFNSNHLLSSLSYCHYGKRLSTQ   38 (75)
Q Consensus        12 eeiidfnsnhllsslsychygkrlstq   38 (75)
                      -||--|||||.|-.-.+--||-+--|.
T Consensus        37 l~IDPfDSdh~lYGTGatiygt~dLt~   63 (77)
T 1sqj_A           37 VLIDPFNPEHLMYGTGATIWATDTLSR   63 (77)
T ss_dssp             EEECTTCTTCEEEECSSCEEEESCGGG
T ss_pred             EEECCCCCCEEEEEECCCEEEECCCCC
T ss_conf             560788897289884242584024662


No 9  
>>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A (A:98-321)
Probab=5.49  E-value=1.5e+02  Score=12.73  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=7.9

Q ss_pred             CHHHCCCCHHHHHHHHHHHH
Q ss_conf             01201115025666433544
Q gi|254780179|r   11 EEEIIDFNSNHLLSSLSYCH   30 (75)
Q Consensus        11 eeeiidfnsnhllsslsych   30 (75)
                      .|+.+-+-...+++.|.|||
T Consensus        16 ~e~~~~~i~~qil~al~ylH   35 (224)
T 2a2a_A           16 SEEEATSFIKQILDGVNYLH   35 (224)
T ss_dssp             EHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             09999999999887778898


No 10 
>>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} (G:)
Probab=5.45  E-value=86  Score=14.05  Aligned_cols=10  Identities=60%  Similarity=0.963  Sum_probs=0.0

Q ss_pred             HHHHHHCCHH
Q ss_conf             8987520149
Q gi|254780179|r   39 YKTLRKGILI   48 (75)
Q Consensus        39 yktlrkgili   48 (75)
                      |.|.|+|-||
T Consensus         1 yetvr~ggli   10 (29)
T 3b8e_G            1 YETVRNGGLI   10 (29)
T ss_dssp             CTTTSTTSSG
T ss_pred             CCCEECCCEE
T ss_conf             9443338674


Done!