Query         gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Mon May 23 02:36:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780179.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2caz_B Vacuolar protein sortin  12.9      76  0.0032   13.5   3.1   41   27-75     74-114 (155)
  2 2f6m_B Vacuolar protein sortin  10.7      91  0.0038   13.1   2.3   40   27-74     57-96  (109)
  3 2p22_B Vacuolar protein sortin   7.7      92  0.0039   13.1   0.6   40   27-74     66-105 (118)
  4 2hma_A Probable tRNA (5-methyl   6.0      72   0.003   13.6  -0.7   15   57-71    165-179 (376)
  5 2der_A TRNA-specific 2-thiouri   5.0 1.2E+02  0.0049   12.5  -0.1   14   58-71    174-187 (380)
  6 3b8e_G Na+/K+ ATPase gamma sub   4.5      78  0.0033   13.5  -1.3   10   39-48      1-10  (29)
  7 2jo1_A Phospholemman; FXYD1, N   4.2 1.9E+02   0.008   11.4   0.5   12   38-49     12-23  (72)
  8 2vvp_A Ribose-5-phosphate isom   3.5 1.4E+02  0.0058   12.2  -0.7   38   11-48     29-68  (162)
  9 2jp3_A FXYD domain-containing    3.4 2.4E+02    0.01   10.9   2.7   24   39-62     14-38  (67)
 10 3bz1_M PSII-M, photosystem II    3.4 2.4E+02    0.01   10.9   2.1   17   46-62     15-31  (36)

No 1  
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=12.93  E-value=76  Score=13.52  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             3544323445788987520149999999999974000337888873179
Q gi|254780179|r   27 SYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYRF   75 (75)
Q Consensus        27 sychygkrlstqyktlrkgilipvvfsilyftisksifplshfkkhyrf   75 (75)
                      .|-.--.||-.|||++.+.+.-..        +++.+..+..|.+.|+.
T Consensus        74 eYt~tC~rLL~QYKt~l~~~~~~~--------v~~~f~~le~F~~~Y~l  114 (155)
T 2caz_B           74 QYTNTVDKLLKQFKVYLNSQNKEE--------INKHFQSIEAFCDTYNI  114 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSSCHH--------HHHHTCSHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------HHCCCCCHHHHHHHHCC
T ss_conf             999999999999999998610365--------53137999999999788


No 2  
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protein sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=10.71  E-value=91  Score=13.12  Aligned_cols=40  Identities=18%  Similarity=0.237  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             354432344578898752014999999999997400033788887317
Q gi|254780179|r   27 SYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYR   74 (75)
Q Consensus        27 sychygkrlstqyktlrkgilipvvfsilyftisksifplshfkkhyr   74 (75)
                      .|-.--.||-.|||++.+.+.-+.|-        +..-.+..|.+.|+
T Consensus        57 eYt~~c~rLl~QYK~~~~~~~~~~v~--------~~~~~le~F~~~y~   96 (109)
T 2f6m_B           57 QYTNTVDKLLKQFKVYLNSQNKEEIN--------KHFQSIEAFADTYN   96 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTTTHHH--------HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCCHHHHHHHHC
T ss_conf             89999999999999999870006652--------03688999999978


No 3  
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=7.73  E-value=92  Score=13.09  Aligned_cols=40  Identities=18%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             354432344578898752014999999999997400033788887317
Q gi|254780179|r   27 SYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYR   74 (75)
Q Consensus        27 sychygkrlstqyktlrkgilipvvfsilyftisksifplshfkkhyr   74 (75)
                      .|-.--.||-.|||++.+...-+.|        ++....+..|.+.|+
T Consensus        66 eYt~~c~rLl~QYK~~~~~~~~~~v--------~~~~~~le~F~~~y~  105 (118)
T 2p22_B           66 QYTNTVDKLLKQFKVYLNSQNKEEI--------NKHFQSIEAFADTYN  105 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCCCHHHHHHHHC
T ss_conf             8999999999999999987201665--------203798999999878


No 4  
>2hma_A Probable tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=5.98  E-value=72  Score=13.64  Aligned_cols=15  Identities=40%  Similarity=0.837  Sum_probs=9.5

Q ss_pred             HHHHHCCCCHHHHHH
Q ss_conf             997400033788887
Q gi|254780179|r   57 FTISKSIFPLSHFKK   71 (75)
Q Consensus        57 ftisksifplshfkk   71 (75)
                      -.+++.+|||.++.|
T Consensus       165 ~~L~~~iFPLG~~~K  179 (376)
T 2hma_A          165 EQLQKTMFPLGHLEK  179 (376)
T ss_dssp             HHHTTEECTTTTCCH
T ss_pred             HHHHCCCCCCCCCCH
T ss_conf             788366688899977


No 5  
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=5.03  E-value=1.2e+02  Score=12.53  Aligned_cols=14  Identities=36%  Similarity=0.838  Sum_probs=7.9

Q ss_pred             HHHHCCCCHHHHHH
Q ss_conf             97400033788887
Q gi|254780179|r   58 TISKSIFPLSHFKK   71 (75)
Q Consensus        58 tisksifplshfkk   71 (75)
                      .+++.+|||.++.|
T Consensus       174 ~L~~~~FPLG~~~K  187 (380)
T 2der_A          174 QIAQSLFPVGELEK  187 (380)
T ss_dssp             HHHHEECCGGGSCH
T ss_pred             HHCCEEECCCCCCH
T ss_conf             50554768978855


No 6  
>3b8e_G Na+/K+ ATPase gamma subunit transcript variant A; P-type ATPase, cation pump, membrane protein, hydrolase, ATP-binding, calcium transport; HET: PC1; 3.50A {Sus scrofa} PDB: 3kdp_G*
Probab=4.48  E-value=78  Score=13.49  Aligned_cols=10  Identities=60%  Similarity=0.963  Sum_probs=6.1

Q ss_pred             HHHHHHCCHH
Q ss_conf             8987520149
Q gi|254780179|r   39 YKTLRKGILI   48 (75)
Q Consensus        39 yktlrkgili   48 (75)
                      |.|.|+|-||
T Consensus         1 yetvr~ggli   10 (29)
T 3b8e_G            1 YETVRNGGLI   10 (29)
T ss_dssp             CTTTSTTSSG
T ss_pred             CCCEECCCEE
T ss_conf             9442338675


No 7  
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.21  E-value=1.9e+02  Score=11.42  Aligned_cols=12  Identities=33%  Similarity=0.603  Sum_probs=9.4

Q ss_pred             HHHHHHHCCHHH
Q ss_conf             889875201499
Q gi|254780179|r   38 QYKTLRKGILIP   49 (75)
Q Consensus        38 qyktlrkgilip   49 (75)
                      .|.|||.|=||-
T Consensus        12 DY~tLRiGGLi~   23 (72)
T 2jo1_A           12 DYQSLQIGGLVI   23 (72)
T ss_dssp             STHHHHHHHHHH
T ss_pred             CHHHHEECCCHH
T ss_conf             417850544245


No 8  
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=3.53  E-value=1.4e+02  Score=12.17  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=23.7

Q ss_pred             CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHH
Q ss_conf             01201115025666433544323445788987--520149
Q gi|254780179|r   11 EEEIIDFNSNHLLSSLSYCHYGKRLSTQYKTL--RKGILI   48 (75)
Q Consensus        11 eeeiidfnsnhllsslsychygkrlstqyktl--rkgili   48 (75)
                      .-|++|+...-.-++..|-.|+++++.....-  ..||++
T Consensus        29 g~ev~D~G~~~~~~~~dYpd~a~~va~~v~~~~~~~GIli   68 (162)
T 2vvp_A           29 GHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVL   68 (162)
T ss_dssp             TCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             9989967998666778725899998887436877779998


No 9  
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.42  E-value=2.4e+02  Score=10.91  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=0.0

Q ss_pred             HHHHHHCCH-HHHHHHHHHHHHHHC
Q ss_conf             898752014-999999999997400
Q gi|254780179|r   39 YKTLRKGIL-IPVVFSILYFTISKS   62 (75)
Q Consensus        39 yktlrkgil-ipvvfsilyftisks   62 (75)
                      |.+||.|=| +.+|.-++-..|--|
T Consensus        14 y~tLRigGLi~a~vlf~~GiliilS   38 (67)
T 2jp3_A           14 WESLQLGGLIFGGLLCIAGIALALS   38 (67)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHEECCCHHHHHHHHHHHHHHHC
T ss_conf             1784143415799999999999986


No 10 
>3bz1_M PSII-M, photosystem II reaction center protein M; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_M* 2axt_M* 3bz2_M* 3kzi_M* 3a0b_M* 3a0h_M*
Probab=3.35  E-value=2.4e+02  Score=10.87  Aligned_cols=17  Identities=35%  Similarity=0.784  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHHHC
Q ss_conf             14999999999997400
Q gi|254780179|r   46 ILIPVVFSILYFTISKS   62 (75)
Q Consensus        46 ilipvvfsilyftisks   62 (75)
                      |++|.+|-+..+.-..|
T Consensus        15 ilvPt~FLlILyvqT~s   31 (36)
T 3bz1_M           15 VLVPSVFLIILYVQTES   31 (36)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHEEEECC
T ss_conf             99988887653144133


Done!