Query gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 75
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Mon May 23 01:36:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780179.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f6mb1 a.2.17.2 (B:15-118) Va 16.0 36 0.0026 14.0 2.3 40 27-74 52-91 (104)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 5.6 91 0.0067 11.9 2.2 14 45-58 14-27 (36)
3 d1x3zb1 a.189.1.1 (B:253-309) 3.4 1.2E+02 0.0086 11.3 0.1 21 33-53 29-50 (57)
4 d2ibaa1 d.96.1.4 (A:1-136) Ura 3.3 64 0.0046 12.7 -1.4 13 44-56 71-83 (136)
5 d2vvpa1 c.121.1.1 (A:3-158) Al 2.8 1.1E+02 0.0078 11.5 -0.7 37 12-48 28-66 (156)
6 d1fuia1 b.43.2.1 (A:356-591) L 2.6 1.5E+02 0.011 10.8 -0.1 27 15-43 167-193 (236)
7 d1njqa_ g.37.1.3 (A:) SUPERMAN 2.5 1.4E+02 0.0099 11.0 -0.5 8 5-12 24-31 (37)
8 d1mwva1 a.93.1.3 (A:35-440) Ca 2.4 1.8E+02 0.013 10.3 1.3 33 3-35 17-50 (406)
9 d1go4a_ d.135.1.1 (A:) The spi 2.2 1.9E+02 0.014 10.2 0.0 22 51-75 21-42 (196)
10 d1y1oa_ c.52.1.28 (A:) Recombi 2.2 94 0.0069 11.8 -1.6 15 58-72 73-87 (168)
No 1
>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.01 E-value=36 Score=13.99 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf 354432344578898752014999999999997400033788887317
Q gi|254780179|r 27 SYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYR 74 (75)
Q Consensus 27 sychygkrlstqyktlrkgilipvvfsilyftisksifplshfkkhyr 74 (75)
.|-.--.||-.|||++.+.+.-+.| ++..-.+..|.+.|+
T Consensus 52 eYt~~c~rLl~QyK~~~~~~~~~~v--------~~~f~~le~F~~~y~ 91 (104)
T d2f6mb1 52 QYTNTVDKLLKQFKVYLNSQNKEEI--------NKHFQSIEAFADTYN 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTTHH--------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCCCHHHHHHHHC
T ss_conf 8999999999999999987105776--------220699999999977
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.65 E-value=91 Score=11.85 Aligned_cols=14 Identities=36% Similarity=0.757 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 01499999999999
Q gi|254780179|r 45 GILIPVVFSILYFT 58 (75)
Q Consensus 45 gilipvvfsilyft 58 (75)
=|+||.+|-+..+.
T Consensus 14 FilvPt~FLliLyv 27 (36)
T d2axtm1 14 FVLVPSVFLIILYV 27 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHE
T ss_conf 99998999887512
No 3
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.42 E-value=1.2e+02 Score=11.27 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHCCHH-HHHHH
Q ss_conf 3445788987520149-99999
Q gi|254780179|r 33 KRLSTQYKTLRKGILI-PVVFS 53 (75)
Q Consensus 33 krlstqyktlrkgili-pvvfs 53 (75)
..+|+.|..||..|+- |-+|-
T Consensus 29 e~ls~ryp~lre~im~npe~fi 50 (57)
T d1x3zb1 29 ENISARYPQLREHIMANPEVFV 50 (57)
T ss_dssp HHHHTTCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHH
T ss_conf 9998766799999975979999
No 4
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=3.26 E-value=64 Score=12.68 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=7.9
Q ss_pred HCCHHHHHHHHHH
Q ss_conf 2014999999999
Q gi|254780179|r 44 KGILIPVVFSILY 56 (75)
Q Consensus 44 kgilipvvfsily 56 (75)
.|+.-|--|.+.-
T Consensus 71 ~~~~s~E~Fa~~L 83 (136)
T d2ibaa1 71 NPVTPPELFGSIL 83 (136)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
T ss_conf 7999989999999
No 5
>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.75 E-value=1.1e+02 Score=11.47 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHCCHH
Q ss_conf 120111502566643354432344578898--7520149
Q gi|254780179|r 12 EEIIDFNSNHLLSSLSYCHYGKRLSTQYKT--LRKGILI 48 (75)
Q Consensus 12 eeiidfnsnhllsslsychygkrlstqykt--lrkgili 48 (75)
-|++|+...-.-++..|-.++++++..... ...||++
T Consensus 28 ~~viD~G~~~~~~~~dYpd~a~~va~~v~~~~~~~GIli 66 (156)
T d2vvpa1 28 HEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVL 66 (156)
T ss_dssp CEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 989966997666777544789999998603556658986
No 6
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=2.63 E-value=1.5e+02 Score=10.76 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11150256664335443234457889875
Q gi|254780179|r 15 IDFNSNHLLSSLSYCHYGKRLSTQYKTLR 43 (75)
Q Consensus 15 idfnsnhllsslsychygkrlstqyktlr 43 (75)
-.+.+||- +.+|-|.|..|-|--.-||
T Consensus 167 ~nwGANH~--~~~yGHiGadlitLasmLR 193 (236)
T d1fuia1 167 ANWGANHG--VLTIGHVGADFITLASMLR 193 (236)
T ss_dssp HTCSSSEE--EEEESCCHHHHHHHHHHHT
T ss_pred HHCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_conf 74478653--2111136789999999878
No 7
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=2.45 E-value=1.4e+02 Score=10.95 Aligned_cols=8 Identities=38% Similarity=0.816 Sum_probs=0.0
Q ss_pred ECCCCCCH
Q ss_conf 32655301
Q gi|254780179|r 5 HQNSHKEE 12 (75)
Q Consensus 5 hqnshkee 12 (75)
|+++|+.+
T Consensus 24 H~~~Hr~~ 31 (37)
T d1njqa_ 24 HMNVHRRD 31 (37)
T ss_dssp HHHTTCCS
T ss_pred HHHHHCCH
T ss_conf 17654032
No 8
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}
Probab=2.40 E-value=1.8e+02 Score=10.26 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred EEECCCCCCHHH-CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 343265530120-111502566643354432344
Q gi|254780179|r 3 LLHQNSHKEEEI-IDFNSNHLLSSLSYCHYGKRL 35 (75)
Q Consensus 3 llhqnshkeeei-idfnsnhllsslsychygkrl 35 (75)
.|||++.+..-+ -|||-..-+.+|.|+..-+.+
T Consensus 17 ~l~~~~~~~~p~~~~~~y~~~~~~lD~~alk~di 50 (406)
T d1mwva1 17 ILHRHSSLSDPMGKDFNYAQAFEKLDLAAVKRDL 50 (406)
T ss_dssp GGSCSCGGGCCSCTTCCHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHH
T ss_conf 1356876569898887789998750599999999
No 9
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.25 E-value=1.9e+02 Score=10.18 Aligned_cols=22 Identities=32% Similarity=0.711 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 9999999974000337888873179
Q gi|254780179|r 51 VFSILYFTISKSIFPLSHFKKHYRF 75 (75)
Q Consensus 51 vfsilyftisksifplshfkkhyrf 75 (75)
+-+|||. ..|||-+.|++...|
T Consensus 21 i~~ILY~---RgiyP~~~F~~~~~~ 42 (196)
T d1go4a_ 21 INSILYQ---RGIYPSETFTRVQKY 42 (196)
T ss_dssp HHHHHHH---TTSSCGGGEEEEEET
T ss_pred HHHHHHH---CCCCCHHHCHHHEEC
T ss_conf 9999997---047996886132577
No 10
>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related factor A (PrfA) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=2.21 E-value=94 Score=11.78 Aligned_cols=15 Identities=47% Similarity=0.851 Sum_probs=0.0
Q ss_pred HHHHCCCCHHHHHHH
Q ss_conf 974000337888873
Q gi|254780179|r 58 TISKSIFPLSHFKKH 72 (75)
Q Consensus 58 tisksifplshfkkh 72 (75)
|-+|.-|||+.++.|
T Consensus 73 T~~ktsFpl~ni~~H 87 (168)
T d1y1oa_ 73 TKNKTAFPLKNFHAH 87 (168)
T ss_dssp ECCSSEEEGGGSCHH
T ss_pred CCCCCEECHHHCCHH
T ss_conf 368870453307799
Done!