RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780179|ref|YP_003064592.1| hypothetical protein
CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional.
          Length = 591

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 33  KRLSTQYKTLRKGILIPVVFSI----LYFTISKSIFPLSHF 69
           KR +     +   + IP V  I    L+ T+ K+  PL +F
Sbjct: 420 KRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAALPLPYF 460


>gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 520

 Score = 24.2 bits (53), Expect = 7.1
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 23  LSSLSYCHYGKRLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHF 69
           LS+                    + + +  ++  FTI  +IFP  HF
Sbjct: 199 LSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPN-HF 244


>gnl|CDD|162112 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam
           antibiotics, the antitumor agent, bestatin, and various
           protease inhibitors). 
          Length = 654

 Score = 24.0 bits (52), Expect = 9.1
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 46  ILIPVVFSILYFTISKSIFPLSHFKK 71
           I +P+   I+Y  I+K     +  +K
Sbjct: 295 IFVPIFDYIVYPAIAKCGTRFTSLRK 320


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,185,225
Number of extensions: 56654
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 14
Length of query: 75
Length of database: 5,994,473
Length adjustment: 45
Effective length of query: 30
Effective length of database: 5,022,113
Effective search space: 150663390
Effective search space used: 150663390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.0 bits)