RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780179|ref|YP_003064592.1| hypothetical protein
CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62]
         (75 letters)



>d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated
          protein 28, VPS28 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 104

 Score = 22.8 bits (49), Expect = 8.0
 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 8/41 (19%)

Query: 34 RLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYR 74
          +L  Q+K          +        +K    +  F   Y 
Sbjct: 59 KLLKQFKVYLNSQNKEEI--------NKHFQSIEAFADTYN 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 284,018
Number of extensions: 10087
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)