RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780179|ref|YP_003064592.1| hypothetical protein CLIBASIA_00310 [Candidatus Liberibacter asiaticus str. psy62] (75 letters) >d2f6mb1 a.2.17.2 (B:15-118) Vacuolar protein sorting-associated protein 28, VPS28 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 104 Score = 22.8 bits (49), Expect = 8.0 Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 8/41 (19%) Query: 34 RLSTQYKTLRKGILIPVVFSILYFTISKSIFPLSHFKKHYR 74 +L Q+K + +K + F Y Sbjct: 59 KLLKQFKVYLNSQNKEEI--------NKHFQSIEAFADTYN 91 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.327 0.140 0.417 Gapped Lambda K H 0.267 0.0623 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 284,018 Number of extensions: 10087 Number of successful extensions: 37 Number of sequences better than 10.0: 1 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 8 Length of query: 75 Length of database: 2,407,596 Length adjustment: 42 Effective length of query: 33 Effective length of database: 1,830,936 Effective search space: 60420888 Effective search space used: 60420888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 47 (22.1 bits)