HHsearch alignment for GI: 254780180 and conserved domain: COG0809
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1038.03 Aligned_cols=344 Identities=51% Similarity=0.815 Sum_probs=330.9
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
T Consensus 1 m~~~~fdf~LPeelIAq~P~~~R~~sRLLvl~~~~~---~~~h~~F~dl~dyl~~GD~LVfNdTrVIpARl~G~k~---- 73 (348)
T COG0809 1 MRLSDFDFDLPEELIAQYPAEPRDSSRLLVLDRKTG---EIEHRTFYDLIDYLNPGDLLVFNDTRVIPARLFGRKH---- 73 (348)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCC---CEECCCHHHHHHHCCCCCEEEEECCEEECHHEEECCC----
T ss_conf 956557888997897169998676533899847888---3332545456753487878998368076032050027----
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCC-CHHHHHHHHHC
Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786-30002544203
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGI-ELERQISLVGT 159 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~-~~~~~L~~~G~ 159 (360)
T Consensus 74 ~~g~~vEvll~~~~~~~~w~al~~~~kr~k~G~~i~f~~~-----l~a~v~e~~~~g~~~l~F~~~~~~~l~e~L~~~G~ 148 (348)
T COG0809 74 ESGGKVEVLLERRLDDNRWLALIKPSKRLKAGDEIYFGDG-----LKATVLERLEHGLRLLEFDYEGIFSLLELLEKYGE 148 (348)
T ss_pred CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCC-----CEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCC
T ss_conf 8896599998726178827999432567888998994798-----26999996288529999945785059999997599
Q ss_pred CCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 57852221234565211433101345675740055568878999999999721553037873165665788741013566
Q gi|254780180|r 160 IPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHI 239 (360)
Q Consensus 160 iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~ 239 (360)
T Consensus 149 ~PLPPYI~--~~~~~~d~~~YQTVYak~~GsvAAPTAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~ 226 (348)
T COG0809 149 MPLPPYIK--RKLDELDRDRYQTVYAKEPGSVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHK 226 (348)
T ss_pred CCCCCCCC--CCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf 89981338--7622124443246642588720047687778999999999779539999999646554341204433444
Q ss_pred CCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf 77000778599999999875379809996287899899998528984688872236657409611431255277554578
Q gi|254780180|r 240 MHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST 319 (360)
Q Consensus 240 mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 319 (360)
T Consensus 227 MH~E~~~v~~eta~~i~~~k~~GgRIiaVGTTs~R~LEsa~~~~~-~~~~sg~T~IFI~PGy~~~~vD~LiTNFHlPkST 305 (348)
T COG0809 227 MHSEYYEVPQETADAINAAKARGGRIIAVGTTSVRTLESAAREAG-LKAFSGWTDIFIYPGYRFKVVDALITNFHLPKST 305 (348)
T ss_pred CCHHHEECCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC-CCCCCCCCCEEECCCCCCEECCEEHCCCCCCCCH
T ss_conf 305523259999999999997398499981615777887751377-6767676217862798526701100047687238
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCCCC
Q ss_conf 9999998719899999999999869826110102223367
Q gi|254780180|r 320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK 359 (360)
Q Consensus 320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~~~ 359 (360)
T Consensus 306 LlMLVsAFaG~~~~~~aY~~Ai~~~YRFfSyGDamlI~~~ 345 (348)
T COG0809 306 LLMLVSAFAGREELLAAYKHAIEQKYRFFSYGDAMLILRN 345 (348)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCEEEEEEC
T ss_conf 9999998628799999999999846545312677998636