HHsearch alignment for GI: 254780180 and conserved domain: pfam02547
>pfam02547 Queuosine_synth Queuosine biosynthesis protein. Queuosine (Q) biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). Q is a hypermodified nucleoside usually found at the first position of the anticodon of asparagine, aspartate, histidine, and tyrosine tRNAs.
Probab=100.00 E-value=0 Score=589.70 Aligned_cols=217 Identities=46% Similarity=0.754 Sum_probs=204.1
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
T Consensus 1 m~ls~fdy~LP~elIAq~P~~~Rd~sRLLv~~~~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k----- 72 (218)
T pfam02547 1 MKLSDFDYELPEELIAQYPAEPRDSSRLLVLDRETG---EIEHRRFSDLPDYLRPGDLLVFNDTRVIPARLFGRK----- 72 (218)
T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHHCCCCEEEECCCEEEEEEEEEEE-----
T ss_conf 953452889993897589999976454888988999---577767867698766598899738879998999994-----
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCC-CCCHHHHHHHHHC
Q ss_conf 776505899811248661011221156436985799705788740699996035577249997267-8630002544203
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSIS-GIELERQISLVGT 159 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~-~~~~~~~L~~~G~ 159 (360)
T Consensus 73 ~tgg~vEill~~~l~~~~w~~lik~~kk~k~G~~l~~~~-----~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~G~ 147 (218)
T pfam02547 73 ETGGKVEVLLLRPLDDGRWLALVKPSKKLKPGDTLEFGD-----GLKAEVLERLEEGGRLVRFQFEGGEDLLELLERYGH 147 (218)
T ss_pred CCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCC
T ss_conf 689989999985548986999996079999899999699-----818999998579866999993785319999997599
Q ss_pred CCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf 5785222123456521143310134567574005556887899999999972155303787316566578874
Q gi|254780180|r 160 IPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKV 232 (360)
Q Consensus 160 iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~ 232 (360)
T Consensus 148 ~PLPPYI--~R~~~~~D~~~YQTVfA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~i~~iTLHVG~GTF~Pvrv 218 (218)
T pfam02547 148 IPLPPYI--KRPDEEEDRERYQTVYAKKPGSVAAPTAGLHFTPELLERLKAKGVEIAFVTLHVGAGTFLPVRV 218 (218)
T ss_pred CCCCCCC--CCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC
T ss_conf 8998201--5776401266635201599984666868677999999999988984999998366987567529