HHsearch alignment of GI: 254780180 and MMDB domain: 1vky_A_1-76_174-347
>1vky_A (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=761.60 Aligned_cols=238 Identities=47% Similarity=0.782 Sum_probs=231.5
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
|++|+|||+||+|||||+|+++||+|||||+||+++ +|.|+.|+||++||+|||||||||||||
T Consensus 13 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVldr~~g---~i~h~~F~dl~~~l~~gDllV~NdTkVi------------- 76 (250)
T 1vky_A 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVI------------- 76 (250)
T ss_dssp ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECC-------------
T ss_pred EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEE-------------
T ss_conf 488783989895997689999964044889988999---2787567656864799989999799998-------------
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360)
T Consensus 77 -------------------------------------------------------------------------------- 76 (250)
T 1vky_A 77 -------------------------------------------------------------------------------- 76 (250)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360)
Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360)
|||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus 77 ----------------------VyAk~~GsvAAPTAGLHFt~~ll~~l~~kGv~~~~iTLHvG~gTF~pv~~e~i~~H~m 134 (250)
T 1vky_A 77 ----------------------VYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 134 (250)
T ss_dssp ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred ----------------------HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf ----------------------9764258543676886778999999998499268899997355565765542356787
Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL 320 (360)
Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl 320 (360)
|+|||+||++|+++||+||++|+|||||||||+|||||+++ +|.++++.|||||||+|||+|++||+||||||+|+|||
T Consensus 135 h~E~~~I~~~ta~~i~~ak~~g~riiAVGTT~~RaLEsa~~-~g~~~~~~G~T~lfI~Pgy~fkvvd~LiTNFH~P~STL 213 (250)
T 1vky_A 135 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 213 (250)
T ss_dssp CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCHH
T ss_conf 77299982999999999997199589984589999999987-42577767752469899998718186554683770399
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 9999987198999999999998698261101022233
Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
|||||||+|+++++++|++||+++||||||||||||+
T Consensus 214 lmLvsAFag~~~~~~aY~~Ai~~~YrF~syGDamLIl 250 (250)
T 1vky_A 214 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 250 (250)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf 9999984896999999999998799613424120219