HHsearch alignment of GI: 254780180 and MMDB domain: 1wdi_A_

>1wdi_A (A:) Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=1017.51  Aligned_cols=341  Identities=44%  Similarity=0.672  Sum_probs=319.9

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|||||+||+|+|||+|+++||+|||||++|+++.  .|+|+.|+||++||+||||||||||||+||||+|+|     
T Consensus         2 m~ls~fdf~LP~elIAq~P~~~Rd~sRLLVl~r~~g~--~i~h~~F~dl~~~L~~GDlLV~NdTkVipARL~g~k-----   74 (345)
T 1wdi_A            2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----   74 (345)
T ss_dssp             CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             9756769998959976899998611138999889998--576331623676479998999989989788999770-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             77650589981124866101122115643698579970578874---069999603557724999726786300025442
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV  157 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~  157 (360)
                      .+|++||++++++++++.|.|++||+||+|+|+++.|.+.....   .+.++++++.+.+.++..+.   .++.++|+++
T Consensus        75 ~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~---~~~~~~l~~~  151 (345)
T 1wdi_A           75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ---GDLVAHLEEV  151 (345)
T ss_dssp             TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEC---CCHHHHHHHH
T ss_conf             6897089998414576135421210567898988996377532212673799999706872798612---3168898875


Q ss_pred             HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             03578522212345652114331013456757400555688789999999997215530378731656657887410135
Q gi|254780180|r  158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD  237 (360)
Q Consensus       158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~  237 (360)
                      |+|||||||+|     +.|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++++
T Consensus       152 G~~PLPpYI~r-----~~d~e~YQTVyA~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~-~di~~  225 (345)
T 1wdi_A          152 GEVPLPPYIKA-----KIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK  225 (345)
T ss_dssp             CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------
T ss_pred             CCCCCCCHHCC-----CCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC-CCCCC
T ss_conf             47998810202-----4225667778616898552566877778999999997415056799962244446533-52235


Q ss_pred             CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH
Q ss_conf             66770007785999999998753798099962878998999985289846888722366574096114312552775545
Q gi|254780180|r  238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK  317 (360)
Q Consensus       238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~  317 (360)
                      |+||+|||+||++|+++||+||++|||||||||||||||||+++.+|.+++++|||||||+|||+|++||+||||||+||
T Consensus       226 H~mh~E~~~i~~~ta~~i~~ak~~G~RviAVGTT~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~  305 (345)
T 1wdi_A          226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR  305 (345)
T ss_dssp             --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCC
T ss_conf             78776599982999999999997399489984689999999997289866778302459649997748187455684780


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             7899999987198999999999998698261101022233
Q gi|254780180|r  318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 STllmLvsAFaG~e~~~~aY~~Ai~~~YrF~SyGDamLIl  345 (345)
T 1wdi_A          306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  345 (345)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             2999999995896999999999998798433313320219