HHsearch alignment of GI: 254780180 and MMDB domain: 1yy3_A_1-67_171-346
>1yy3_A (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=769.15 Aligned_cols=238 Identities=49% Similarity=0.815 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
|++|+|||+||+|||||+|+++||+|||||++|+++ +|+|..|+||++||+||||||||||||
T Consensus 5 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVl~r~~g---~i~h~~F~dl~~~l~~gDllV~NdTkV-------------- 67 (243)
T 1yy3_A 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRV-------------- 67 (243)
T ss_dssp ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCS--------------
T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEE--------------
T ss_conf 724114889994897589999975242778988999---167765633686479998999989998--------------
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360)
T Consensus 68 -------------------------------------------------------------------------------- 67 (243)
T 1yy3_A 68 -------------------------------------------------------------------------------- 67 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360)
Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360)
|||+++|||||||||||||++||++|++|||++++||||||+|||+||++|++++|+|
T Consensus 68 ----------------------VyAk~~GSVAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHvG~gTF~pv~~e~i~~H~m 125 (243)
T 1yy3_A 68 ----------------------VYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 125 (243)
T ss_dssp ------------------------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred ----------------------HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf ----------------------9730689832885655679999999998598599999863455445655543345788
Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf 700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST 319 (360)
Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St 319 (360)
|+|||+||++|+++||+||++|+|||||||||+|+|||+++. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus 126 h~E~~~i~~~ta~~In~ak~~g~RiiAVGTT~~RaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LiTNFH~P~St 205 (243)
T 1yy3_A 126 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS 205 (243)
T ss_dssp CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCH
T ss_conf 87389964999999999997499199970368999999986249960678863196977989776808765367277029
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 99999987198999999999998698261101022233
Q gi|254780180|r 320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
||||||||+|+++|+++|++||+++||||||||||||+
T Consensus 206 llmLvsAFaG~~~~~~aY~~Ai~~~YRF~syGDamLIl 243 (243)
T 1yy3_A 206 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII 243 (243)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf 99999995897999999999998798502523210219