Query         gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 360
No_of_seqs    165 out of 1731
Neff          6.3 
Searched_HMMs 33803
Date          Mon May 23 02:36:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780180.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1wdi_A Hypothetical protein T 100.0       0       0 1017.5  24.5  341    1-357     2-345 (345)
  2 >1yy3_A S-adenosylmethionine:t 100.0       0       0  769.1  17.3  238    1-357     5-243 (243)
  3 >1vky_A S-adenosylmethionine:t 100.0       0       0  761.6  18.9  238    1-357    13-250 (250)
  4 >1yy3_A S-adenosylmethionine:t  99.9 1.3E-23 3.9E-28  190.2   9.0  103   67-182     1-103 (103)
  5 >1vky_A S-adenosylmethionine:t  99.9 1.4E-22 4.2E-27  182.8   6.5   97   68-182     1-97  (97)
  6 >2wbq_A L-arginine beta-hydrox  87.0    0.78 2.3E-05   26.6   3.9   11  107-117   206-216 (265)
  7 >1ds1_A Clavaminate synthase 1  85.5    0.79 2.3E-05   26.5   3.2   20   52-71    186-205 (247)
  8 >2og5_A Putative oxygenase; no  83.2     1.1 3.3E-05   25.4   3.2   24   43-66     84-107 (357)
  9 >3im1_A Protein SNU246, PRE-mR  66.7     2.9 8.7E-05   22.4   1.7   19  199-217     6-24  (40)
 10 >2iye_A Copper-transporting AT  64.3     5.6 0.00017   20.4   2.8   80  195-279    36-118 (164)
 11 >2ho4_A Haloacid dehalogenase-  60.9     5.2 0.00015   20.7   2.1   43  178-220     5-47  (140)
 12 >1nx8_A CARC, carbapenem synth  60.0     9.1 0.00027   18.9   3.2   19   47-65     30-48  (217)
 13 >2r6f_A Excinuclease ABC subun  56.5     4.9 0.00014   20.9   1.3   72  181-272    87-170 (204)
 14 >1a3w_A Pyruvate kinase; allos  54.9      15 0.00045   17.3   3.9   57   44-120    40-96  (99)
 15 >3gg8_A Pyruvate kinase; malar  53.5      16 0.00047   17.1   5.4   76   23-119    16-92  (96)
 16 >2oyc_A PLP phosphatase, pyrid  52.9     9.2 0.00027   18.9   2.3   43  177-219    18-60  (166)
 17 >2vf7_A UVRA2, excinuclease AB  52.1     7.7 0.00023   19.4   1.8   60  193-272   118-182 (204)
 18 >3hqn_D Pyruvate kinase, PK; T  50.7      16 0.00048   17.1   3.2   55   45-119    40-94  (98)
 19 >1e0t_A Pyruvate kinase, PK; p  49.1      19 0.00055   16.7   5.0   80   19-119    12-92  (96)
 20 >1vjr_A 4-nitrophenylphosphata  48.0      13 0.00039   17.8   2.4   92  176-269    13-114 (145)
 21 >2vf7_A UVRA2, excinuclease AB  45.0       9 0.00027   18.9   1.2   72  181-272    98-182 (201)
 22 >2hx1_A Predicted sugar phosph  43.3      18 0.00054   16.7   2.6  116  177-302    11-135 (162)
 23 >3hvb_A Protein FIMX; EAL phos  37.8      27  0.0008   15.5   3.0   85  198-282   321-411 (437)
 24 >3khd_A Pyruvate kinase; malar  35.2      30 0.00088   15.2   5.1   54   45-119    38-91  (95)
 25 >1xne_A Hypothetical protein P  33.8      29 0.00086   15.3   2.4   66  107-192    33-102 (113)
 26 >3gr4_A Pyruvate kinase isozym  33.6      31 0.00093   15.0   3.8   54   45-119    43-96  (100)
 27 >1vim_A Hypothetical protein A  33.6      32 0.00093   15.0   3.1   78  248-339   102-179 (200)
 28 >2bo9_A Carboxypeptidase A4; m  33.5      32 0.00093   15.0   2.8  125  208-345   182-308 (308)
 29 >1yv9_A Hydrolase, haloacid de  33.4      17  0.0005   17.0   1.1   99  179-281     4-109 (154)
 30 >1w91_A Beta-xylosidase; MAD,   33.2      23 0.00068   16.0   1.8   31  193-223     1-32  (128)
 31 >1omh_A TRWC protein; protein-  31.9      14 0.00043   17.5   0.6   25  193-217   189-213 (223)
 32 >1pca_A Procarboxypeptidase A   29.8      13 0.00038   17.8   0.0  103  215-329   285-391 (403)
 33 >3dnp_A Stress response protei  29.7      24  0.0007   15.9   1.3   40  180-219     6-46  (175)
 34 >3i1m_B 30S ribosomal protein   29.4      26 0.00078   15.6   1.5   20  250-269   123-142 (196)
 35 >2q7t_A Protein TRAI, DNA heli  29.2      37  0.0011   14.5   2.4   27  192-218   192-218 (248)
 36 >2hbw_A NLP/P60 protein; YP_32  29.1      37  0.0011   14.5   2.4   13  106-118    73-85  (150)
 37 >2o7i_A Oligopeptide ABC trans  27.5      23 0.00069   16.0   1.0  111   94-211    35-161 (169)
 38 >2i9e_A Triosephosphate isomer  27.5      31 0.00093   15.0   1.7  132  180-348    62-206 (259)
 39 >1wui_S Periplasmic [NIFE] hyd  26.5      41  0.0012   14.2   3.6   62  213-293    66-128 (180)
 40 >2om6_A Probable phosphoserine  26.4      32 0.00094   15.0   1.5   74  202-281    20-109 (150)
 41 >3hv8_A Protein FIMX; EAL phos  26.3      41  0.0012   14.2   4.3   83  201-283   155-243 (268)
 42 >1wde_A Probable diphthine syn  26.2      21 0.00064   16.2   0.6  107  110-218     6-117 (120)
 43 >1jr2_A Uroporphyrinogen-III s  26.1      42  0.0012   14.2   2.2   16  264-279   102-117 (147)
 44 >3knz_A Putative sugar binding  25.9      42  0.0012   14.1   4.9   42  248-302    77-118 (149)
 45 >1jmc_A Protein (replication p  25.9      42  0.0012   14.1   3.5   20   99-118    62-82  (127)
 46 >2r6f_A Excinuclease ABC subun  25.5      42  0.0013   14.1   2.0   61  192-272   124-189 (212)
 47 >2nlz_A Cephalosporin acylase;  24.5      44  0.0013   13.9   2.1   18  199-216    15-32  (38)
 48 >1dl5_A Protein-L-isoaspartate  23.8      45  0.0013   13.9   1.9   48  180-232   201-251 (253)
 49 >3epr_A Hydrolase, haloacid de  23.8      31 0.00092   15.1   1.1  100  180-281     5-108 (154)
 50 >3bkw_A MLL3908 protein, S-ade  23.8      46  0.0014   13.9   3.6   79  197-278    71-162 (201)
 51 >3bbo_D Ribosomal protein L1;   23.7      22 0.00064   16.2   0.2   10  149-158    50-59  (88)
 52 >2e28_A Pyruvate kinase, PK; a  23.2      47  0.0014   13.8   6.5   81   19-119    11-92  (96)
 53 >1yqt_A RNAse L inhibitor; ATP  22.8      35   0.001   14.7   1.2   31  193-223   184-219 (276)
 54 >2qi9_C Vitamin B12 import ATP  22.6      30 0.00088   15.2   0.8   64  193-281   159-231 (249)
 55 >1zcz_A Bifunctional purine bi  22.6      48  0.0014   13.7   3.0   25  190-218   106-130 (133)
 56 >2pcj_A ABC transporter, lipop  22.6      36  0.0011   14.6   1.2   33  193-225   166-203 (224)
 57 >2obb_A Hypothetical protein;   22.2      40  0.0012   14.3   1.4   23  246-268    24-46  (142)
 58 >3krs_A Triosephosphate isomer  21.8      47  0.0014   13.7   1.7  126  180-348    86-230 (271)
 59 >1wcw_A Uroporphyrinogen III s  21.5      51  0.0015   13.5   3.2   36  244-279    16-61  (114)
 60 >2yz2_A Putative ABC transport  21.4      40  0.0012   14.3   1.2   55  193-272   164-223 (266)
 61 2k1g_A Solution Nmr Structure   21.2      49  0.0014   13.7   1.6   14  106-119    65-78  (135)
 62 >1aw2_A Triosephosphate isomer  20.6      50  0.0015   13.6   1.6   63  181-272    66-133 (256)
 63 >3d8t_A Uroporphyrinogen-III s  20.3      53  0.0016   13.4   4.0   35  245-279    18-62  (116)
 64 >2vpq_A Acetyl-COA carboxylase  20.1      54  0.0016   13.4   1.8   28  251-278    13-40  (104)
 65 >3gfz_A Klebsiella pneumoniae   20.0      54  0.0016   13.3   2.2   86  198-283   141-233 (264)

No 1  
>>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:)
Probab=100.00  E-value=0  Score=1017.51  Aligned_cols=341  Identities=44%  Similarity=0.672  Sum_probs=319.9

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|||||+||+|+|||+|+++||+|||||++|+++.  .|+|+.|+||++||+||||||||||||+||||+|+|     
T Consensus         2 m~ls~fdf~LP~elIAq~P~~~Rd~sRLLVl~r~~g~--~i~h~~F~dl~~~L~~GDlLV~NdTkVipARL~g~k-----   74 (345)
T 1wdi_A            2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----   74 (345)
T ss_dssp             CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             9756769998959976899998611138999889998--576331623676479998999989989788999770-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             77650589981124866101122115643698579970578874---069999603557724999726786300025442
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV  157 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~  157 (360)
                      .+|++||++++++++++.|.|++||+||+|+|+++.|.+.....   .+.++++++.+.+.++..+.   .++.++|+++
T Consensus        75 ~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~---~~~~~~l~~~  151 (345)
T 1wdi_A           75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ---GDLVAHLEEV  151 (345)
T ss_dssp             TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEC---CCHHHHHHHH
T ss_conf             6897089998414576135421210567898988996377532212673799999706872798612---3168898875


Q ss_pred             HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             03578522212345652114331013456757400555688789999999997215530378731656657887410135
Q gi|254780180|r  158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD  237 (360)
Q Consensus       158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~  237 (360)
                      |+|||||||+|     +.|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++++
T Consensus       152 G~~PLPpYI~r-----~~d~e~YQTVyA~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~-~di~~  225 (345)
T 1wdi_A          152 GEVPLPPYIKA-----KIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK  225 (345)
T ss_dssp             CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------
T ss_pred             CCCCCCCHHCC-----CCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC-CCCCC
T ss_conf             47998810202-----4225667778616898552566877778999999997415056799962244446533-52235


Q ss_pred             CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH
Q ss_conf             66770007785999999998753798099962878998999985289846888722366574096114312552775545
Q gi|254780180|r  238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK  317 (360)
Q Consensus       238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~  317 (360)
                      |+||+|||+||++|+++||+||++|||||||||||||||||+++.+|.+++++|||||||+|||+|++||+||||||+||
T Consensus       226 H~mh~E~~~i~~~ta~~i~~ak~~G~RviAVGTT~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~  305 (345)
T 1wdi_A          226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR  305 (345)
T ss_dssp             --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCC
T ss_conf             78776599982999999999997399489984689999999997289866778302459649997748187455684780


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             7899999987198999999999998698261101022233
Q gi|254780180|r  318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 STllmLvsAFaG~e~~~~aY~~Ai~~~YrF~SyGDamLIl  345 (345)
T 1wdi_A          306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  345 (345)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             2999999995896999999999998798433313320219


No 2  
>>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} (A:1-67,A:171-346)
Probab=100.00  E-value=0  Score=769.15  Aligned_cols=238  Identities=49%  Similarity=0.815  Sum_probs=231.8

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|+|||+||+|||||+|+++||+|||||++|+++   +|+|..|+||++||+||||||||||||              
T Consensus         5 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVl~r~~g---~i~h~~F~dl~~~l~~gDllV~NdTkV--------------   67 (243)
T 1yy3_A            5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRV--------------   67 (243)
T ss_dssp             ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCS--------------
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEE--------------
T ss_conf             724114889994897589999975242778988999---167765633686479998999989998--------------


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (243)
T 1yy3_A           68 --------------------------------------------------------------------------------   67 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                                            |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|++++|+|
T Consensus        68 ----------------------VyAk~~GSVAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHvG~gTF~pv~~e~i~~H~m  125 (243)
T 1yy3_A           68 ----------------------VYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM  125 (243)
T ss_dssp             ------------------------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred             ----------------------HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------9730689832885655679999999998598599999863455445655543345788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
                      |+|||+||++|+++||+||++|+|||||||||+|+|||+++. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus       126 h~E~~~i~~~ta~~In~ak~~g~RiiAVGTT~~RaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LiTNFH~P~St  205 (243)
T 1yy3_A          126 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS  205 (243)
T ss_dssp             CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCH
T ss_conf             87389964999999999997499199970368999999986249960678863196977989776808765367277029


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             99999987198999999999998698261101022233
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       206 llmLvsAFaG~~~~~~aY~~Ai~~~YRF~syGDamLIl  243 (243)
T 1yy3_A          206 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII  243 (243)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             99999995897999999999998798502523210219


No 3  
>>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:1-76,A:174-347)
Probab=100.00  E-value=0  Score=761.60  Aligned_cols=238  Identities=47%  Similarity=0.782  Sum_probs=231.5

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|+|||+||+|||||+|+++||+|||||+||+++   +|.|+.|+||++||+|||||||||||||             
T Consensus        13 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVldr~~g---~i~h~~F~dl~~~l~~gDllV~NdTkVi-------------   76 (250)
T 1vky_A           13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVI-------------   76 (250)
T ss_dssp             ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECC-------------
T ss_pred             EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEE-------------
T ss_conf             488783989895997689999964044889988999---2787567656864799989999799998-------------


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (250)
T 1vky_A           77 --------------------------------------------------------------------------------   76 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                                            |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus        77 ----------------------VyAk~~GsvAAPTAGLHFt~~ll~~l~~kGv~~~~iTLHvG~gTF~pv~~e~i~~H~m  134 (250)
T 1vky_A           77 ----------------------VYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM  134 (250)
T ss_dssp             ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred             ----------------------HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------9764258543676886778999999998499268899997355565765542356787


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
                      |+|||+||++|+++||+||++|+|||||||||+|||||+++ +|.++++.|||||||+|||+|++||+||||||+|+|||
T Consensus       135 h~E~~~I~~~ta~~i~~ak~~g~riiAVGTT~~RaLEsa~~-~g~~~~~~G~T~lfI~Pgy~fkvvd~LiTNFH~P~STL  213 (250)
T 1vky_A          135 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL  213 (250)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCHH
T ss_conf             77299982999999999997199589984589999999987-42577767752469899998718186554683770399


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9999987198999999999998698261101022233
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||+|+++++++|++||+++||||||||||||+
T Consensus       214 lmLvsAFag~~~~~~aY~~Ai~~~YrF~syGDamLIl  250 (250)
T 1vky_A          214 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  250 (250)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9999984896999999999998799613424120219


No 4  
>>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} (A:68-170)
Probab=99.90  E-value=1.3e-23  Score=190.25  Aligned_cols=103  Identities=28%  Similarity=0.503  Sum_probs=92.1

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             88899876404677776505899811248661011221156436985799705788740699996035577249997267
Q gi|254780180|r   67 ITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSIS  146 (360)
Q Consensus        67 ipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~  146 (360)
                      |||||+|.|.    ++|++||++++++++++.|.||+||+||+|+|++|.|.+.    .+.++|+++.+.|.++++|+.+
T Consensus         1 ipARL~g~k~----~tG~~iEilll~~l~~~~w~~lvrp~kklk~G~~l~~~~~----~l~a~v~~~~~~g~~~~~f~~~   72 (103)
T 1yy3_A            1 LPARLFGTKE----DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDG----RLKAICTEELEHGGRKMEFQYD   72 (103)
T ss_dssp             CCEEEEEEES----SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTS----SSEEEEEEECTTSCEEEEEECS
T ss_pred             EEEEEEEEEC----CCCCEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC----CEEEEEEEEECCCCEEEEECCC
T ss_conf             8568997734----7884689987402468658999604555553129995377----2489999981588379997378


Q ss_pred             CCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC
Q ss_conf             863000254420357852221234565211433101
Q gi|254780180|r  147 GIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT  182 (360)
Q Consensus       147 ~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT  182 (360)
                      + ++.++|+++|+|||||||+|  +  ++|.+||||
T Consensus        73 ~-~~~~~l~~~G~iPLPPYI~R--~--~~D~erYQT  103 (103)
T 1yy3_A           73 G-IFYEVLESLGEMPLPPYIKE--Q--LDDKERYQT  103 (103)
T ss_dssp             S-CHHHHHHHHHTCCCCHHHHT--T--SSSCC----
T ss_pred             C-CHHHHHHHCCCCCCCCCCCC--C--CCHHHHHHH
T ss_conf             8-47999997189999933155--6--114999999


No 5  
>>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:77-173)
Probab=99.87  E-value=1.4e-22  Score=182.84  Aligned_cols=97  Identities=30%  Similarity=0.442  Sum_probs=88.2

Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf             88998764046777765058998112486610112211564369857997057887406999960355772499972678
Q gi|254780180|r   68 TAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISG  147 (360)
Q Consensus        68 pARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~  147 (360)
                      ||||+|+|     .+|++||++++++++++.|.||+||+|++|+|++|.|.+     .++++|+++.++|.++++|+.+ 
T Consensus         1 PARL~g~k-----~tG~~vEilll~~l~~~~w~~l~k~~k~~k~G~~l~~~~-----~~~~~v~~~~~~g~~~v~f~~~-   69 (97)
T 1vky_A            1 PARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ-   69 (97)
T ss_dssp             SCEEEEBC--------CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC-
T ss_pred             EEEEEEEE-----CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEECC-----CCCEEEEEECCCCEEEEECCCC-
T ss_conf             88999981-----334642047776426876999961665677886798527-----7406999861541367731675-


Q ss_pred             CCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC
Q ss_conf             63000254420357852221234565211433101
Q gi|254780180|r  148 IELERQISLVGTIPLPPYIARKRPIDARDYVDYQT  182 (360)
Q Consensus       148 ~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT  182 (360)
                        ++++|+++|+|||||||+|     +.|.+||||
T Consensus        70 --~~~~le~~G~iPLPPYI~r-----~~D~erYQT   97 (97)
T 1vky_A           70 --DDRLIFEKGRTPLPPYIKN-----EVPLERYQT   97 (97)
T ss_dssp             --CHHHHHHHC------------------------
T ss_pred             --CHHHHHHCCCCCCCCHHCC-----CCHHHHHHH
T ss_conf             --3577986599888932214-----315999999


No 6  
>>2wbq_A L-arginine beta-hydroxylase; oxidoreductase, non-heme Fe(II) hydroxylase, cbeta- hydroxylation, L-arginine oxygenase, NRPS, viomycin; HET: ZZU; 1.10A {Streptomyces vinaceus} PDB: 2wbp_A* 2wbo_A* (A:1-202,A:296-358)
Probab=87.04  E-value=0.78  Score=26.57  Aligned_cols=11  Identities=27%  Similarity=0.613  Sum_probs=6.0

Q ss_pred             CCCCCCCEEEE
Q ss_conf             64369857997
Q gi|254780180|r  107 KVIKKGDILHF  117 (360)
Q Consensus       107 kklk~G~~l~~  117 (360)
                      -+|++||.+.|
T Consensus       206 ~~l~~gd~~~~  216 (265)
T 2wbq_A          206 LVLDQGDVAFI  216 (265)
T ss_dssp             EECCTTCEEEE
T ss_pred             EECCCCCEEEE
T ss_conf             75089958999


No 7  
>>1ds1_A Clavaminate synthase 1; oxygenase, trifunctional enzyme, oxidoreductase,lyase; HET: AKG; 1.08A {Streptomyces clavuligerus} (A:1-181,A:259-324)
Probab=85.45  E-value=0.79  Score=26.55  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=15.4

Q ss_pred             HCCCCCEEEEECCCEEEEEE
Q ss_conf             26988799994795688899
Q gi|254780180|r   52 FLNSNDAIVFNNTKVITAQL   71 (360)
Q Consensus        52 ~L~~gDLLV~NnTKVipARL   71 (360)
                      .|+|||+++|||-+|+.+|=
T Consensus       186 ~l~pGd~~~~dN~r~lHgR~  205 (247)
T 1ds1_A          186 YLEPGDLLIVDNFRTTHART  205 (247)
T ss_dssp             CCCTTCEEEEETTTEEEEEC
T ss_pred             ECCCCCEEEEECCEEEECCC
T ss_conf             42899689997881136887


No 8  
>>2og5_A Putative oxygenase; non-ribosomal peptide synthesis, iron(II)/alpha- ketoglutarate dependent hydroxylase, jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB: 2og6_A 2og7_A* (A:)
Probab=83.21  E-value=1.1  Score=25.43  Aligned_cols=24  Identities=17%  Similarity=0.145  Sum_probs=12.9

Q ss_pred             EEEHHHHHHHCCCCCEEEEECCCE
Q ss_conf             101434787269887999947956
Q gi|254780180|r   43 DHLVSDLPAFLNSNDAIVFNNTKV   66 (360)
Q Consensus        43 h~~F~dl~~~L~~gDLLV~NnTKV   66 (360)
                      +..+..+.+.|..--++||.+.-+
T Consensus        84 ~~~~~~~~~~l~~~G~viirg~p~  107 (357)
T 2og5_A           84 RRDLAGFRRDSGPDGAIVLRGLPV  107 (357)
T ss_dssp             HHHHHHHHHCCTTTTEEEEECCCC
T ss_pred             HHHHHHHHHCCCCCCEEEECCCCC
T ss_conf             999999974148872799889985


No 9  
>>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular modeling; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A (A:159-198)
Probab=66.69  E-value=2.9  Score=22.43  Aligned_cols=19  Identities=21%  Similarity=0.600  Sum_probs=17.3

Q ss_pred             CCCHHHHHHHHHHCCCCEE
Q ss_conf             7899999999972155303
Q gi|254780180|r  199 HFTSNLLSRLISIGIKVYF  217 (360)
Q Consensus       199 HFt~~ll~~L~~kGi~~~~  217 (360)
                      |||++++++.+++||+..|
T Consensus         6 hf~~~~ikrc~~~~VesVf   24 (40)
T 3im1_A            6 HFNNKILEKCKEINVETVY   24 (40)
T ss_dssp             TCCHHHHHHHHHTTCCSHH
T ss_pred             CCCHHHHHHHHHCCCCCHH
T ss_conf             3789999999864479999


No 10 
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=64.27  E-value=5.6  Score=20.41  Aligned_cols=80  Identities=16%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC-HHHHHHHHHHHHCCCEEEEECHHH-
Q ss_conf             568878999999999721553037873165665788741013566770007785-999999998753798099962878-
Q gi|254780180|r  195 TAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID-APTAQALNSVKSRGGRIVSVGTTS-  272 (360)
Q Consensus       195 TAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~-~~~~~~I~~ak~~g~rIiAVGTT~-  272 (360)
                      |--|.=..+.++.|++.|+++.-+|     |-....-..--.+..++.=+..++ ++-.+.|+.-+.+|++|..||--. 
T Consensus        36 ~~~~P~a~e~I~~L~~~Gi~v~IiT-----GD~~~~a~~ia~~lgI~~v~a~v~p~~K~~iv~~L~~~g~~Va~VGDg~N  110 (164)
T 2iye_A           36 TGTLPNLKDYLEKLKNEGLKIIILS-----GDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVN  110 (164)
T ss_dssp             TTTTSCCHHHHHHHHGGGCEEEEEC-----SSCHHHHHHHHHHHTCSEEECSCCHHHHHHHHHHHHHTTCCEEEEECSTT
T ss_pred             CCCCCHHHHHHHHHHHCCCCEEEEC-----CCCCCCCHHHHHHHCHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             8523129999999997599279823-----87421101479985302534023578898888455225605899942310


Q ss_pred             -HHHHHHH
Q ss_conf             -9989999
Q gi|254780180|r  273 -LRLLETA  279 (360)
Q Consensus       273 -~R~LEs~  279 (360)
                       +-+|..|
T Consensus       111 D~~aL~~A  118 (164)
T 2iye_A          111 DAAALALA  118 (164)
T ss_dssp             THHHHHHS
T ss_pred             HHHHHHHC
T ss_conf             46688648


No 11 
>>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A (A:1-75,A:195-259)
Probab=60.88  E-value=5.2  Score=20.68  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=36.1

Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf             3310134567574005556887899999999972155303787
Q gi|254780180|r  178 VDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTL  220 (360)
Q Consensus       178 ~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTL  220 (360)
                      ++|..+|....|-+..-+--+.-+.++|++|+++|+.+..+|=
T Consensus         5 ~~~~~~~~d~d~~l~~~~~~~pg~~e~L~~L~~~G~~~~iiTN   47 (140)
T 2ho4_A            5 RALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVXVRFVTN   47 (140)
T ss_dssp             -CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEEC
T ss_pred             CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             5788999938994281990680099999999986998899948


No 12 
>>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} (A:1-153,A:210-273)
Probab=60.03  E-value=9.1  Score=18.91  Aligned_cols=19  Identities=16%  Similarity=0.258  Sum_probs=9.8

Q ss_pred             HHHHHHCCCCCEEEEECCC
Q ss_conf             3478726988799994795
Q gi|254780180|r   47 SDLPAFLNSNDAIVFNNTK   65 (360)
Q Consensus        47 ~dl~~~L~~gDLLV~NnTK   65 (360)
                      .+|-+.|-.--.+|+||-+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~   48 (217)
T 1nx8_A           30 ETIKNLLMRQGFVVVKNLD   48 (217)
T ss_dssp             HHHHHHHHHHCEEEECSCC
T ss_pred             HHHHHHHHHCCEEEECCCC
T ss_conf             9999999976899999999


No 13 
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:620-714,A:864-972)
Probab=56.46  E-value=4.9  Score=20.86  Aligned_cols=72  Identities=29%  Similarity=0.403  Sum_probs=43.8

Q ss_pred             CCCCCCCCCC-------CCCCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC
Q ss_conf             0134567574-------00555688789-----99999999721553037873165665788741013566770007785
Q gi|254780180|r  181 QTTYAKIQGS-------VAAPTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID  248 (360)
Q Consensus       181 QTVyA~~~GS-------VAAPTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~  248 (360)
                      |+-..+++-+       .-=||||||..     .++|.+|+++|..+..||.....=        ..      ..+..+ 
T Consensus        87 Q~~ig~npRa~~p~LliLDEPTsgLD~~~~~~l~~~L~~L~~~G~TVIiVtHdl~~i--------~~------aDrIiv-  151 (204)
T 2r6f_A           87 QSPIGRTPRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI--------KT------ADYIID-  151 (204)
T ss_dssp             SSCSCSSTTCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--------TT------CSEEEE-
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--------HH------CCEEEE-
T ss_conf             775678866899918999898768879999999999999997699999991789999--------75------999999-


Q ss_pred             HHHHHHHHHHHHCCCEEEEECHHH
Q ss_conf             999999998753798099962878
Q gi|254780180|r  249 APTAQALNSVKSRGGRIVSVGTTS  272 (360)
Q Consensus       249 ~~~~~~I~~ak~~g~rIiAVGTT~  272 (360)
                           .-......||++++.||..
T Consensus       152 -----L~~~~~~~~G~ii~~G~~e  170 (204)
T 2r6f_A          152 -----LGPEGGDRGGQIVAVGTPE  170 (204)
T ss_dssp             -----ECSSSTTSCCSEEEEESHH
T ss_pred             -----CCCCCCCCCCEEEEEECHH
T ss_conf             -----6887777893899985889


No 14 
>>1a3w_A Pyruvate kinase; allosteric regulation, tranferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} (A:89-187)
Probab=54.91  E-value=15  Score=17.30  Aligned_cols=57  Identities=11%  Similarity=0.043  Sum_probs=37.9

Q ss_pred             EEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCC
Q ss_conf             01434787269887999947956888998764046777765058998112486610112211564369857997057
Q gi|254780180|r   44 HLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ  120 (360)
Q Consensus        44 ~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~  120 (360)
                      -.+.+|.+.+++||.+.+.|-++                    ++...+..++..+.|.+..++.++...-+.+++.
T Consensus        40 v~~~~i~~~v~~Gd~IlidDG~i--------------------~l~V~~v~~~~~v~~~v~~~G~L~s~KgvnlPg~   96 (99)
T 1a3w_A           40 VDYKNITKVISAGRIIYVDDGVL--------------------SFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGT   96 (99)
T ss_dssp             BSCTTHHHHCCTTCEEEETTTTE--------------------EEECCBCCC--CEEEEBCSCCCCCSSCBEECTTC
T ss_pred             ECCCCCCCCCCCCCEEEEECCCE--------------------EEEEEEECCCEEEEEEECCCEEECCCCCCCCCCC
T ss_conf             32423100036771688635611--------------------4777541474145664035244025665567886


No 15 
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:106-201)
Probab=53.47  E-value=16  Score=17.14  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=41.6

Q ss_pred             CCCCEEEEE-CCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf             120313566-3788875315310143478726988799994795688899876404677776505899811248661011
Q gi|254780180|r   23 RDSARLMVV-HPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSV  101 (360)
Q Consensus        23 Rd~SRLLV~-~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~  101 (360)
                      +...++.+. +....+....-.-.+.+|.+.+++||.+.++|-++.                    +.+ ...++..+.|
T Consensus        16 ~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IlidDG~i~--------------------l~V-~~v~~~~i~~   74 (96)
T 3gg8_A           16 QQGATLKIVTDYNLIGDETTIACSYGALPQSVKPGNTILIADGSLS--------------------VKV-VEVGSDYVIT   74 (96)
T ss_dssp             CTTCEEEEESCTTCCCCSSEEEBSCTTHHHHCCTTCEEEETTTTEE--------------------EEE-EEECSSEEEE
T ss_pred             CCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCCEE--------------------EEE-EEECCEEEEE
T ss_conf             6998899966876689866798732422124788988998068404--------------------888-8402105887


Q ss_pred             HHHCCCCCCCCCEEEECC
Q ss_conf             221156436985799705
Q gi|254780180|r  102 YARPSKVIKKGDILHFFS  119 (360)
Q Consensus       102 l~kp~kklk~G~~l~~~~  119 (360)
                      .+..++.++...-+.|++
T Consensus        75 ~v~~~G~L~s~KgvnlPg   92 (96)
T 3gg8_A           75 QAQNTATIGERKNMNLPN   92 (96)
T ss_dssp             EESSCEEECSSCBEECTT
T ss_pred             ECCCCEEECCCCCCCCCC
T ss_conf             403560443530012222


No 16 
>>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* (A:1-90,A:231-306)
Probab=52.93  E-value=9.2  Score=18.85  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=36.9

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf             4331013456757400555688789999999997215530378
Q gi|254780180|r  177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVT  219 (360)
Q Consensus       177 ~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iT  219 (360)
                      .++|..+|....|.+.-.+.-+.=..++|++|+++|+.++-+|
T Consensus        18 ~~~~~~~~~d~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~ivT   60 (166)
T 2oyc_A           18 LGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS   60 (166)
T ss_dssp             HHHCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEE
T ss_pred             HHCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             9679999996988128899168109999999997799889995


No 17 
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:1-107,A:397-493)
Probab=52.14  E-value=7.7  Score=19.41  Aligned_cols=60  Identities=23%  Similarity=0.351  Sum_probs=39.5

Q ss_pred             CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE
Q ss_conf             5556887899-----99999997215530378731656657887410135667700077859999999987537980999
Q gi|254780180|r  193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS  267 (360)
Q Consensus       193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA  267 (360)
                      =||||||.-.     ++|.+|+++|..+..||.+...=        ...++.     ..|.       ..+-..+|+|++
T Consensus       118 EPTsgLDp~~~~~l~~~l~~L~~~G~TVI~VtHdl~~i--------~~ad~i-----i~i~-------~~~~~~~G~Iv~  177 (204)
T 2vf7_A          118 EPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVI--------RRADWL-----VDVG-------PEAGEKGGEILY  177 (204)
T ss_dssp             CTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH--------TTCSEE-----EEEC-------SSSGGGCCSEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH--------HHHHEE-----EECC-------CCCEEECCEEEC
T ss_conf             85355899999999999999860598189997678998--------632055-----7704-------773577325415


Q ss_pred             ECHHH
Q ss_conf             62878
Q gi|254780180|r  268 VGTTS  272 (360)
Q Consensus       268 VGTT~  272 (360)
                      .||..
T Consensus       178 ~Gtpe  182 (204)
T 2vf7_A          178 SGPPE  182 (204)
T ss_dssp             EECGG
T ss_pred             CCCHH
T ss_conf             67878


No 18 
>>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A (D:89-186)
Probab=50.67  E-value=16  Score=17.13  Aligned_cols=55  Identities=7%  Similarity=0.064  Sum_probs=30.4

Q ss_pred             EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC
Q ss_conf             143478726988799994795688899876404677776505899811248661011221156436985799705
Q gi|254780180|r   45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS  119 (360)
Q Consensus        45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~  119 (360)
                      .+.+|.+.+++||.+-+.|-++                    ++...+......+.|.+..+++++...-+.|++
T Consensus        40 ~~~~l~~~v~~G~~IlidDG~i--------------------~l~V~~v~~~~~v~~~v~~~G~L~s~KgvNlPg   94 (98)
T 3hqn_D           40 DYQNLSKVVRPGNYIYIDDGIL--------------------ILQVQSHEDEQTLECTVTNSHTISDRRGVNLPG   94 (98)
T ss_dssp             SCTTHHHHCCTTCEEEETTTTE--------------------EEEEEEEEETTEEEEEECSCEEEETTCBEECTT
T ss_pred             CCHHHHHHCCCCCEEEECCCEE--------------------EEEEEEECCCCEEEEEEECCEEEECCCCCCCCC
T ss_conf             5166686467899899818868--------------------999998638864999972785822797422589


No 19 
>>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} (A:71-166)
Probab=49.09  E-value=19  Score=16.67  Aligned_cols=80  Identities=4%  Similarity=-0.013  Sum_probs=40.2

Q ss_pred             CCCCCCCCEEEEE-CCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCC
Q ss_conf             9878120313566-378887531531014347872698879999479568889987640467777650589981124866
Q gi|254780180|r   19 PVFPRDSARLMVV-HPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPN   97 (360)
Q Consensus        19 P~~~Rd~SRLLV~-~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~   97 (360)
                      |..-+...++-+. ++...+....-.-.+.+|.+.+++||.+.++|-++.                    +.+. ..+++
T Consensus        12 ~i~l~~G~~i~l~~~~~~~~~~~~i~v~~~~l~~~v~~G~~IlidDG~i~--------------------l~V~-~v~~~   70 (96)
T 1e0t_A           12 DVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIG--------------------MEVT-AIEGN   70 (96)
T ss_dssp             CEEECTTCEEEEESCTTCCBBTTEEEBSCTTHHHHCCTTCEEEETTTTEE--------------------EEEE-EEETT
T ss_pred             EEEECCCCEEEEEECCCCCCCCCEEECCHHHHHHHCCCCCEEEEECCEEE--------------------EEEE-ECCCC
T ss_conf             68961899899981776689888885347898975679988999689899--------------------9999-54599


Q ss_pred             CHHHHHHCCCCCCCCCEEEECC
Q ss_conf             1011221156436985799705
Q gi|254780180|r   98 SWSVYARPSKVIKKGDILHFFS  119 (360)
Q Consensus        98 ~w~~l~kp~kklk~G~~l~~~~  119 (360)
                      ...|.+..++.++...-+.+++
T Consensus        71 ~i~~~v~~~G~L~s~KgvnlPg   92 (96)
T 1e0t_A           71 KVICKVLNNGDLGENKGVNLPG   92 (96)
T ss_dssp             EEEEEECSCEEECSSCEEECSS
T ss_pred             EEEEEEEECCEEECCCCEECCC
T ss_conf             7999998282970787322589


No 20 
>>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.40A {Thermotoga maritima} (A:1-85,A:212-271)
Probab=47.96  E-value=13  Score=17.77  Aligned_cols=92  Identities=15%  Similarity=0.078  Sum_probs=51.9

Q ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC--------CCCCCCC--HHE
Q ss_conf             143310134567574005556887899999999972155303787316566578874101--------3566770--007
Q gi|254780180|r  176 DYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDT--------DDHIMHS--EIG  245 (360)
Q Consensus       176 D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i--------~~h~mH~--E~~  245 (360)
                      -.++|+.++-...|-+.-=+.-+.=..+.|++|+++|++++.+|=.-+...  ....+.+        .+..+.+  |-.
T Consensus        13 ~~~~~~~~l~D~dgvl~~~~~~~pga~e~l~~L~~~G~~~~~vTN~~~~~~--~~~~~~l~~~gi~~~~d~i~~sp~~~i   90 (145)
T 1vjr_A           13 VLDKIELFILDXDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGA--QDYVRKLRNXGVDVPDDAVVTSKERXA   90 (145)
T ss_dssp             GGGGCCEEEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCH--HHHHHHHHHTTCCCCGGGEEEHGGGEE
T ss_pred             HHHCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCH--HHHHHHHHHCCCCCCCCEECCHCHHCC
T ss_conf             997499999928784687993582099999999976997899458998999--999999985155665232345811035


Q ss_pred             EECHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             785999999998753798099962
Q gi|254780180|r  246 FIDAPTAQALNSVKSRGGRIVSVG  269 (360)
Q Consensus       246 ~i~~~~~~~I~~ak~~g~rIiAVG  269 (360)
                      .|......-|.-|++-|-+.|.|-
T Consensus        91 ~VGDs~~~Di~~A~~aG~~ti~v~  114 (145)
T 1vjr_A           91 XVGDRLYTDVKLGKNAGIVSILVL  114 (145)
T ss_dssp             EEESCHHHHHHHHHHHTCEEEEES
T ss_pred             CCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             117781789999998799499989


No 21 
>>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* (A:494-600,A:749-842)
Probab=45.05  E-value=9  Score=18.95  Aligned_cols=72  Identities=28%  Similarity=0.407  Sum_probs=43.6

Q ss_pred             CCCCCCCCCC-CC-------CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE
Q ss_conf             0134567574-00-------5556887899-----999999972155303787316566578874101356677000778
Q gi|254780180|r  181 QTTYAKIQGS-VA-------APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI  247 (360)
Q Consensus       181 QTVyA~~~GS-VA-------APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i  247 (360)
                      ||--.+++=| .+       =||||||...     ++|.+|+++|..+..||.+...=        ...||.+     .+
T Consensus        98 QtpIGr~prs~~~~~lliLDEPtsgLD~~~~~~l~~~l~~l~~~g~TVivvtH~l~~i--------~~aD~ii-----~l  164 (201)
T 2vf7_A           98 QKPIGRTPRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV--------AASDWVL-----DI  164 (201)
T ss_dssp             SSCSCSSTTCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH--------TTCSEEE-----EE
T ss_pred             CCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH--------HHCCEEE-----EC
T ss_conf             5678888023889978999899778879999999999999997799899990889999--------7589999-----87


Q ss_pred             CHHHHHHHHHHHHCCCEEEEECHHH
Q ss_conf             5999999998753798099962878
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSVGTTS  272 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAVGTT~  272 (360)
                      ..       .+-.++|+|++.||..
T Consensus       165 ~~-------g~~~~~G~iv~~Gtp~  182 (201)
T 2vf7_A          165 GP-------GAGEDGGRLVAQGTPA  182 (201)
T ss_dssp             CS-------SSGGGCCSEEEEECHH
T ss_pred             CC-------CCCCCCCEEEEEECHH
T ss_conf             88-------7777893899983899


No 22 
>>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} (A:1-83,A:206-284)
Probab=43.26  E-value=18  Score=16.72  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=59.3

Q ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--HHEEE---CHHH
Q ss_conf             433101345675740055568878999999999721553037873165665788741013566770--00778---5999
Q gi|254780180|r  177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHS--EIGFI---DAPT  251 (360)
Q Consensus       177 ~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~--E~~~i---~~~~  251 (360)
                      .++|+.++-...|-+..-+.=+.-..++|++|+++|+.++.+|=.-.. +..-+ .+.+..+-+..  +...+   .+..
T Consensus        11 ~~~~~~~~~d~dg~l~~~~~~~pg~~~~L~~L~~~g~~~~i~Tn~~~~-~~~~~-~~~l~~~g~~~~f~~~~~s~~~KP~   88 (162)
T 2hx1_A           11 LPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASR-SPEQL-ADSYHKLGLFSITADKIISSDSQXF   88 (162)
T ss_dssp             GGGCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSS-CHHHH-HHHHHHTTCTTCCGGGEEEHSSHHH
T ss_pred             HHCCCEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHH-HHHHHCCCCCCCCHHEEECCCHHHH
T ss_conf             961999999187801739984831999999999869958999689998-76999-9885402444533103752262888


Q ss_pred             HHHHHHHHH----CCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
Q ss_conf             999998753----798099962878998999985289846888722366574096
Q gi|254780180|r  252 AQALNSVKS----RGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYR  302 (360)
Q Consensus       252 ~~~I~~ak~----~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~  302 (360)
                      ...+..+-+    ...+++-||-..-.=++.|..        .|+..+.|.+|..
T Consensus        89 ~~~~~~~~~~~~~~~~~~l~VgD~~~~Di~~A~~--------~G~~~i~v~~~~~  135 (162)
T 2hx1_A           89 XFAYDXLRQKXEISKREILXVGDTLHTDILGGNK--------FGLDTALVLTGNT  135 (162)
T ss_dssp             HHHHHHHHTTSCCCGGGEEEEESCTTTHHHHHHH--------HTCEEEEESSSSS
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHH--------CCCCEEEECCCCC
T ss_conf             9899887650599835499993880799999998--------7998999899999


No 23 
>>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1} (A:)
Probab=37.81  E-value=27  Score=15.48  Aligned_cols=85  Identities=9%  Similarity=-0.006  Sum_probs=62.9

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE------ECHHHHHHHHHHHHCCCEEEEECHH
Q ss_conf             8789999999997215530378731656657887410135667700077------8599999999875379809996287
Q gi|254780180|r  198 LHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF------IDAPTAQALNSVKSRGGRIVSVGTT  271 (360)
Q Consensus       198 LHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~------i~~~~~~~I~~ak~~g~rIiAVGTT  271 (360)
                      ..-..+.+++|++.|+.++-=-.-.|.++|..+..-.++--|++..+..      -..-....+.-++..|-.|||=|--
T Consensus       321 ~~~~~~~~~~l~~~G~~~~iddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~~~~~~~a~~~~~~viaegVe  400 (437)
T 3hvb_A          321 LKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVE  400 (437)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEETCSSSHHHHHTTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             23332345555554200120368988644999971899999989899851488637999999999999859958995689


Q ss_pred             HHHHHHHHHHC
Q ss_conf             89989999852
Q gi|254780180|r  272 SLRLLETATTE  282 (360)
Q Consensus       272 ~~R~LEs~~~~  282 (360)
                      +...++.+..-
T Consensus       401 ~~~~~~~l~~~  411 (437)
T 3hvb_A          401 SASVLATLWQA  411 (437)
T ss_dssp             SHHHHHHHHHH
T ss_pred             CHHHHHHHHHC
T ss_conf             39999999976


No 24 
>>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} (A:116-210)
Probab=35.18  E-value=30  Score=15.20  Aligned_cols=54  Identities=17%  Similarity=0.226  Sum_probs=32.3

Q ss_pred             EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC
Q ss_conf             143478726988799994795688899876404677776505899811248661011221156436985799705
Q gi|254780180|r   45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS  119 (360)
Q Consensus        45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~  119 (360)
                      .+.++.+.+++||.+.++|-++                    ++.+. ..+++...|.+..++.++...-+.+++
T Consensus        38 ~~~~l~~~v~~G~~IlidDG~i--------------------~l~V~-~v~~~~i~~~v~~~G~L~s~KginlPg   91 (95)
T 3khd_A           38 SYKKLPQSVKPGNIILIADGSV--------------------SCKVL-ETHEDHVITEVLNSAVIGERKNMNLPN   91 (95)
T ss_dssp             SCTTHHHHCCC-CEEEETTTTE--------------------EEEEE-EECSSCEEEEECC-CCCCSSCEEECTT
T ss_pred             ECHHHHHCCCCCCEEEEECCCC--------------------EEEEE-ECCCCEEEEEEECCCEECCCCEEECCC
T ss_conf             0302342168998899837960--------------------79999-726870689992096846885585167


No 25 
>>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} (A:)
Probab=33.83  E-value=29  Score=15.27  Aligned_cols=66  Identities=21%  Similarity=0.263  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCC
Q ss_conf             64369857997057887406999960355772499972678630002544203578522212345652114331013456
Q gi|254780180|r  107 KVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAK  186 (360)
Q Consensus       107 kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~  186 (360)
                      +++++||.|.|.+     .+.++|.+..       +|    .++.++++..|--=+=|=.    ++-+.-.+.|...|.+
T Consensus        33 ~~ik~GD~I~F~~-----~l~v~V~~i~-------~Y----~sF~~ll~~e~~~~v~p~~----~siee~~~~~~~~Y~~   92 (113)
T 1xne_A           33 KDIKRGDKIIFND-----LIPAEVVEVK-------KY----ETFRQVLREEPIDKIFPDK----PSFEKALKRFHNMYPK   92 (113)
T ss_dssp             TTCCTTCEEEETT-----TEEEEEEEEE-------EC----SSHHHHHHHSCHHHHCSSC----CCHHHHHHHHTTSSSS
T ss_pred             HHCCCCCEEEEEC-----CEEEEEEEEE-------EC----CCHHHHHHHCCHHHHCCCC----CCHHHHHHHHHHHCCH
T ss_conf             6189999999930-----1899998999-------83----9999999864987618999----9899999999967899


Q ss_pred             ----CCCCCC
Q ss_conf             ----757400
Q gi|254780180|r  187 ----IQGSVA  192 (360)
Q Consensus       187 ----~~GSVA  192 (360)
                          +.|.+|
T Consensus        93 ekE~~~GVla  102 (113)
T 1xne_A           93 WKEYRYGVLA  102 (113)
T ss_dssp             SCCCCCCCEE
T ss_pred             HHHHHCCEEE
T ss_conf             8987548899


No 26 
>>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* 2vgi_A* (A:137-236)
Probab=33.61  E-value=31  Score=15.03  Aligned_cols=54  Identities=2%  Similarity=-0.029  Sum_probs=31.1

Q ss_pred             EHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECC
Q ss_conf             143478726988799994795688899876404677776505899811248661011221156436985799705
Q gi|254780180|r   45 LVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS  119 (360)
Q Consensus        45 ~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~  119 (360)
                      .+.++.+.+++||.+-++|-++.                    +.+ ...++....|.+..+++++...-+.+++
T Consensus        43 ~~~~l~~~v~~G~~IlidDG~i~--------------------l~V-~~v~~~~i~~~v~~~G~L~s~KgvnlPg   96 (100)
T 3gr4_A           43 DYKNICKVVEVGSKIYVDDGLIS--------------------LQV-KQKGADFLVTEVENGGSLGSKKGVNLPG   96 (100)
T ss_dssp             SCTTHHHHCCTTCEEEETTTTEE--------------------EEE-EEECSSEEEEEEEECEEECSSCBEECTT
T ss_pred             ECCCCHHHCCCCCHHEEECCCEE--------------------EEE-EECCCCCEEEEEECCCEECCCCCCCEEE
T ss_conf             00013000343102101056316--------------------887-4036771279981483746666764100


No 27 
>>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:)
Probab=33.55  E-value=32  Score=15.02  Aligned_cols=78  Identities=9%  Similarity=0.082  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             59999999987537980999628789989999852898468887223665740961143125527755457899999987
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAF  327 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af  327 (360)
                      ++++.+.++.+|+.|.+||+|--..             -.+....+|+-|+.+..-.....-...+..+-.+++.++..+
T Consensus       102 t~~~~~~~~~ak~~g~~vi~IT~~~-------------~s~l~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (200)
T 1vim_A          102 TTSVVNISKKAKDIGSKLVAVTGKR-------------DSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMI  168 (200)
T ss_dssp             CHHHHHHHHHHHHHTCEEEEEESCT-------------TSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECC-------------CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             0237999999986235643664035-------------544323366799966886422233223706540799999999


Q ss_pred             HCHHHHHHHHHH
Q ss_conf             198999999999
Q gi|254780180|r  328 CGIEETKKMYQH  339 (360)
Q Consensus       328 ~G~~~~~~~Y~~  339 (360)
                      .+ +.+...+..
T Consensus       169 ~~-~~~~~~~~~  179 (200)
T 1vim_A          169 FL-DALVAEIMM  179 (200)
T ss_dssp             HH-HHHHHHHHH
T ss_pred             HH-HHHHHHHHH
T ss_conf             99-999999999


No 28 
>>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} (A:)
Probab=33.50  E-value=32  Score=15.02  Aligned_cols=125  Identities=21%  Similarity=0.257  Sum_probs=61.5

Q ss_pred             HHHHCCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCC
Q ss_conf             99721553037873165665-78874101356677000778599999999875379809996287899899998528984
Q gi|254780180|r  208 LISIGIKVYFVTLHVGAGTF-MPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGII  286 (360)
Q Consensus       208 L~~kGi~~~~iTLHVG~GTF-~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~  286 (360)
                      +.++.--..++++|-|.+.. -|-. ..-..+.-+.+...+....++.+.......   .-+|.. -..+   +...|..
T Consensus       182 ~~~~~~~~~~i~~Hs~~~~i~yp~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~---Y~~~G~~  253 (308)
T 2bo9_A          182 IQKHGNFKGFIDLHSYSQLLMYPYG-YSVKKAPDAEELDKVARLAAKALASVSGTE---YQVGPT-CTTV---YPASGSS  253 (308)
T ss_dssp             HHHHCCEEEEEEEEESSSEEEESCS-SCSSCCTTHHHHHHHHHHHHHHHHHHHCCC---CEEEEH-HHHT---CCCCSCH
T ss_pred             HHHCCCCEEEEEEECCCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC---CCCCCC-CCCC---CCCCCCH
T ss_conf             8742780399998228855860677-886679898999999999999999851977---645657-5622---0678858


Q ss_pred             CCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHH-HHHHCHHHHHHHHHHHHHCCC
Q ss_conf             68887223665740961143125527755457899999-987198999999999998698
Q gi|254780180|r  287 NPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLV-SAFCGIEETKKMYQHAISHAY  345 (360)
Q Consensus       287 ~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv-~Af~G~~~~~~~Y~~Ai~~~y  345 (360)
                      ..|.  -+..+.++|-+.+-|.--.+|++|.+.+.-++ ..+.|   ++..-+.+.++-|
T Consensus       254 ~Dw~--y~~~~~~~~T~El~~~g~~gf~~p~~~i~~~~~e~~~~---i~~~~~~i~~~~~  308 (308)
T 2bo9_A          254 IDWA--YDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG---LKTIMEHVRDNLY  308 (308)
T ss_dssp             HHHH--HHTTCCEEEEEEESCSSSSTTCCCGGGHHHHHHHHHHH---HHHHHHHHHTTCC
T ss_pred             HHHH--HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHCCC
T ss_conf             8877--54599379999968898788619989978899999999---9999999985589


No 29 
>>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, structural genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis V583} (A:1-74,A:185-264)
Probab=33.43  E-value=17  Score=16.96  Aligned_cols=99  Identities=13%  Similarity=0.206  Sum_probs=47.1

Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--CCCCC-CCC--CCCHHEEE-CHHHH
Q ss_conf             31013456757400555688789999999997215530378731656657887--41013-566--77000778-59999
Q gi|254780180|r  179 DYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK--VEDTD-DHI--MHSEIGFI-DAPTA  252 (360)
Q Consensus       179 ~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~--~~~i~-~h~--mH~E~~~i-~~~~~  252 (360)
                      +||.++..-.|-+.-=.--+.-+.+.|++|+++|+.+..+|=--.    ..++  .+.+. +..  .....+.- ..+..
T Consensus         4 ~~~~~~~D~DGtl~~~~~~~p~~~e~l~~L~~~Gi~~~i~Tn~~~----~~~~~~~~~l~~~~~~~~~~~~~~kp~p~~~   79 (154)
T 1yv9_A            4 DYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTT----KSPETVAQRLANEFDIHVPASLVYTAKAIIM   79 (154)
T ss_dssp             SCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCS----SCHHHHHHHHHHHSCCCCCGGGEEEHSHHHH
T ss_pred             CCCEEEEECCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCC----CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
T ss_conf             788999918992084998381399999999977997899938999----9879999999875075533120477816778


Q ss_pred             H-HHHHHHHCCCEEEEECHHHHHHHHHHHH
Q ss_conf             9-9998753798099962878998999985
Q gi|254780180|r  253 Q-ALNSVKSRGGRIVSVGTTSLRLLETATT  281 (360)
Q Consensus       253 ~-~I~~ak~~g~rIiAVGTT~~R~LEs~~~  281 (360)
                      + .+....-...+++.||-....-++.|..
T Consensus        80 ~~~~~~~~~~~~~~~~vgdd~~~Di~~A~~  109 (154)
T 1yv9_A           80 ERAIAHLGVEKEQVIMVGDNYETDIQSGIQ  109 (154)
T ss_dssp             HHHHHHHCSCGGGEEEEESCTTTHHHHHHH
T ss_pred             HHHHHHHCCCCCEEEEECCCHHHHHHHHHH
T ss_conf             788998489845499989962789999998


No 30 
>>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} (A:199-326)
Probab=33.24  E-value=23  Score=15.99  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=22.4

Q ss_pred             CCCCCC-CCCHHHHHHHHHHCCCCEEEEEECC
Q ss_conf             555688-7899999999972155303787316
Q gi|254780180|r  193 APTAGL-HFTSNLLSRLISIGIKVYFVTLHVG  223 (360)
Q Consensus       193 APTAGL-HFt~~ll~~L~~kGi~~~~iTLHVG  223 (360)
                      |=|||- +|+++.|+-.++.++.+.||.+|.=
T Consensus         1 ~~~~~~~~w~~~fl~~~~~~~~p~DFig~n~Y   32 (128)
T 1w91_A            1 AICGGSDEWITDFLHFCAERRVPVDFVSRHAY   32 (128)
T ss_dssp             EECSSCTHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf             46778731248999999835997777997205


No 31 
>>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase, DNA replication, transferase/DNA complex; HET: DNA; 1.95A {Escherichia coli} (A:1-223)
Probab=31.92  E-value=14  Score=17.45  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=16.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf             5556887899999999972155303
Q gi|254780180|r  193 APTAGLHFTSNLLSRLISIGIKVYF  217 (360)
Q Consensus       193 APTAGLHFt~~ll~~L~~kGi~~~~  217 (360)
                      ++.+|-.|-.+|.+.|++.|+++..
T Consensus       189 ~~~~~~~y~~~L~~~L~~lG~~~~~  213 (223)
T 1omh_A          189 TRYLGAVYNAELAHELQKLGYQLRY  213 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999999999999999975858764


No 32 
>>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET: CIT; 2.00A {Sus scrofa} (A:)
Probab=29.82  E-value=13  Score=17.83  Aligned_cols=103  Identities=20%  Similarity=0.280  Sum_probs=59.9

Q ss_pred             CEEEEEECCCCC-CCCC--CCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             303787316566-5788--7410135667700077859999999987537980999628789989999852898468887
Q gi|254780180|r  215 VYFVTLHVGAGT-FMPV--KVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSG  291 (360)
Q Consensus       215 ~~~iTLHVG~GT-F~Pi--~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g  291 (360)
                      .++|++|-+..- +-|-  +.+..   .-+.|...+....+.+|.+..   +.-..+|+-+ ..|   +...|....|..
T Consensus       285 ~~~i~~HSyg~~il~P~g~~~~~~---~~~~~l~~~~~~~a~ai~~~~---g~~Y~~g~~~-~~l---Y~~~G~s~Dw~y  354 (403)
T 1pca_A          285 KAFISIHSYSQLLLYPYGYKTQSP---ADKSELNQIAKSAVAALKSLY---GTSYKYGSII-TVI---YQASGGVIDWTY  354 (403)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHH---CCCCCCCCCC-CCC---CCCCCCHHHHHC
T ss_conf             799995378976883677877799---899999999999999988862---9877548865-634---247766777753


Q ss_pred             CCCEEECCCCCCEEEEEEEECCCCCHHHHHH-HHHHHHC
Q ss_conf             2236657409611431255277554578999-9998719
Q gi|254780180|r  292 FTNIFITPGYRFRAVDILMSNFHLPKSTLLM-LVSAFCG  329 (360)
Q Consensus       292 ~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~-Lv~Af~G  329 (360)
                      .  ..|...|.+.+-|.--.+|++|.|...- --..|+|
T Consensus       355 ~--~~~~~s~t~EL~d~g~~gF~lP~~~I~~~~~E~~~~  391 (403)
T 1pca_A          355 N--QGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLA  391 (403)
T ss_dssp             ---------------------------------------
T ss_pred             C--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             1--799389999975898899789999999999999999


No 33 
>>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis} (A:1-85,A:201-290)
Probab=29.72  E-value=24  Score=15.92  Aligned_cols=40  Identities=23%  Similarity=0.255  Sum_probs=15.3

Q ss_pred             HCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCEEEE
Q ss_conf             1013456757400555688-789999999997215530378
Q gi|254780180|r  180 YQTTYAKIQGSVAAPTAGL-HFTSNLLSRLISIGIKVYFVT  219 (360)
Q Consensus       180 YQTVyA~~~GSVAAPTAGL-HFt~~ll~~L~~kGi~~~~iT  219 (360)
                      |+-+|....|..-.+..-+ --+.++|++|+++|+.+..+|
T Consensus         6 ik~i~~DiDgTl~~~~~~i~~~~~e~l~~l~~~Gi~~~ivT   46 (175)
T 3dnp_A            6 KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVT   46 (175)
T ss_dssp             CCEEEECCCCCCSCTTSCCCHHHHHHHHHHHHTTCEEEEBC
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             77899988888448969419999999999997899999989


No 34 
>>3i1m_B 30S ribosomal protein S2; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 2qal_B* 1p87_B 2aw7_B 2avy_B 2i2u_B 2i2p_B* 2qan_B* 2qb9_B* 2qbb_B* 2qbd_B 2qbf_B ... (B:46-241)
Probab=29.42  E-value=26  Score=15.60  Aligned_cols=20  Identities=10%  Similarity=0.122  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHCCCEEEEEC
Q ss_conf             99999998753798099962
Q gi|254780180|r  250 PTAQALNSVKSRGGRIVSVG  269 (360)
Q Consensus       250 ~~~~~I~~ak~~g~rIiAVG  269 (360)
                      +...+|++|..-|-+|||+-
T Consensus       123 ~~~~ai~Ea~~l~IPvI~iv  142 (196)
T 3i1m_B          123 HEHIAIKEANNLGIPVFAIV  142 (196)
T ss_dssp             GGHHHHHHHHHHTCCEEEEC
T ss_pred             CCHHHHHHHHHCCCCEEEEC
T ss_conf             10899999997599767523


No 35 
>>2q7t_A Protein TRAI, DNA helicase I; relaxase, hydrolase, conjugation; HET: TMP; 2.42A {Escherichia coli} PDB: 2q7u_A* 2a0i_A 1p4d_A (A:1-248)
Probab=29.20  E-value=37  Score=14.53  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=22.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             055568878999999999721553037
Q gi|254780180|r  192 AAPTAGLHFTSNLLSRLISIGIKVYFV  218 (360)
Q Consensus       192 AAPTAGLHFt~~ll~~L~~kGi~~~~i  218 (360)
                      +++.+|..+..+|-++|++.|+++...
T Consensus       192 ~~~~~g~~y~~~La~~l~~lGy~~~~~  218 (248)
T 2q7t_A          192 NQIAFGRLYREKLKEQVEALGYETEVV  218 (248)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCCCEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             999999999999999999759764650


No 36 
>>2hbw_A NLP/P60 protein; YP_323898.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: UNL; 1.05A {Anabaena variabilis atcc 29413} PDB: 2evr_A 2fg0_A (A:86-235)
Probab=29.06  E-value=37  Score=14.51  Aligned_cols=13  Identities=23%  Similarity=0.416  Sum_probs=5.9

Q ss_pred             CCCCCCCCEEEEC
Q ss_conf             5643698579970
Q gi|254780180|r  106 SKVIKKGDILHFF  118 (360)
Q Consensus       106 ~kklk~G~~l~~~  118 (360)
                      ...+++||.+.|.
T Consensus        73 ~~~~~pGDlif~~   85 (150)
T 2hbw_A           73 IDELAPGDLVFFG   85 (150)
T ss_dssp             GGGCCTTCEEEEE
T ss_pred             HHHCCCCCEEEEC
T ss_conf             6782578888857


No 37 
>>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A* (A:30-167,A:562-592)
Probab=27.54  E-value=23  Score=15.98  Aligned_cols=111  Identities=14%  Similarity=0.188  Sum_probs=57.0

Q ss_pred             CCCCCHHHHHHCCCCCCCCCEEEEC----------CCCC-C--C-CEEEEEEECCCCCCEEEEECCCCCCHHHHHH-HHH
Q ss_conf             4866101122115643698579970----------5788-7--4-0699996035577249997267863000254-420
Q gi|254780180|r   94 VSPNSWSVYARPSKVIKKGDILHFF----------SQDG-Q--S-RLEATVIDKWNTGEILLVFSISGIELERQIS-LVG  158 (360)
Q Consensus        94 ~~~~~w~~l~kp~kklk~G~~l~~~----------~~~~-~--~-~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~-~~G  158 (360)
                      .++..|..-+|++-+|..|..+.-.          +... .  . .-...-++..++..+.+.|..+...+...+. ..+
T Consensus        35 ~d~~t~tf~LR~gv~fsDG~piTAeDV~~s~~~~~~~~~~~~~~~~~~i~~ve~~dd~tv~i~l~~p~~~~~~~l~~~~~  114 (169)
T 2o7i_A           35 VDDKTLRIYIRPEARWSDGVPITADDFVYALELTKELGIGPGGGWDTYIEYVKAVDTKVVEFKAKEENLNYFQFLSYSLG  114 (169)
T ss_dssp             EETTEEEEEECTTCBCTTSCBCCHHHHHHHHHHHHHHTCSTTTTHHHHEEEEEEEETTEEEEEECSTTCCHHHHHHHHHT
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCEEEEECCCCEEEEEECCCCCHHHHHHHCCCC
T ss_conf             59978999938959928989926999999999986058886311233025999857968999965788036555312311


Q ss_pred             CCCCCHHHCCCCCCCCCCHHHHCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             357852221234565211433101345-67574005556887899999999972
Q gi|254780180|r  159 TIPLPPYIARKRPIDARDYVDYQTTYA-KIQGSVAAPTAGLHFTSNLLSRLISI  211 (360)
Q Consensus       159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA-~~~GSVAAPTAGLHFt~~ll~~L~~k  211 (360)
                      -+|+|--+..+-. +..+...-+--.. -.+|.++.|||      .+++.|.+.
T Consensus       115 ~~ilpk~~~e~~~-~~~~~~~~~~P~~~~~~~~~~~~~~------~~~~~~~~~  161 (169)
T 2o7i_A          115 AQPMPKHVYERIR-AQMNIKDWINDLGTVDEGGIEIPTA------KIFEDLQKA  161 (169)
T ss_dssp             CCCCCHHHHHHHH-HHSCGGGCCCCCSBCC-CCSBEEHH------HHHHHHHHT
T ss_pred             CCCCCHHHHHHCC-CHHCCCCCCCCCCCCCCCCEEEEHH------HHHHHHHHH
T ss_conf             2247187776312-1001222222315100474662078------999999887


No 38 
>>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:)
Probab=27.51  E-value=31  Score=15.03  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=71.2

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH----HEEECHHHHHHH
Q ss_conf             1013456757400555688789999999997215530378731656657887410135667700----077859999999
Q gi|254780180|r  180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE----IGFIDAPTAQAL  255 (360)
Q Consensus       180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E----~~~i~~~~~~~I  255 (360)
                      =|.|+....|+---     +.+.++|..   -|++.+.|    |                 |||    +.+.++...+++
T Consensus        62 AQnv~~~~~Ga~TG-----evS~~~L~d---~G~~~vli----G-----------------HSERR~~f~Etd~~i~~Kv  112 (259)
T 2i9e_A           62 AQNCYKVPKGAFTG-----EISPAMIKD---VGADWVIL----G-----------------HSERRQIFGESDELIAEKV  112 (259)
T ss_dssp             ESCCCSSSSBSCTT-----CCCHHHHHH---TTCCEEEE----S-----------------CHHHHHTSCCCHHHHHHHH
T ss_pred             EEECCCCCHHHHHH-----HHHHHHHHH---CCCCCEEC----C-----------------CHHCCCCCCCCCHHHHHHH
T ss_conf             22111211034565-----654999987---08530220----2-----------------4310310004668888999


Q ss_pred             HHHHHCC-CEEEEECHHHH-H----HHHHHHHCC-CCCCCCCCCCCEEE--CCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             9875379-80999628789-9----899998528-98468887223665--74096114312552775545789999998
Q gi|254780180|r  256 NSVKSRG-GRIVSVGTTSL-R----LLETATTED-GIINPWSGFTNIFI--TPGYRFRAVDILMSNFHLPKSTLLMLVSA  326 (360)
Q Consensus       256 ~~ak~~g-~rIiAVGTT~~-R----~LEs~~~~~-~~~~~~~g~T~lfI--~Pg~~f~~vd~LiTNFH~P~Stll~Lv~A  326 (360)
                      ..+.+.| ..|+|||.|.. |    +.+.+..+. ..+.....+.++.|  -|.+-..      |+= .|.....--+.+
T Consensus       113 ~~al~~gl~pIiCVGE~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~iIAYEPvwAIG------tg~-~as~~~i~~v~~  185 (259)
T 2i9e_A          113 CHALESGLKVIACIGETLEEREAGKTEEVVFRQTKAIAAKVNDWSNVVIAYEPVWAIG------TGK-TATPQQAQDVHK  185 (259)
T ss_dssp             HHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHCSCCTTEEEEECCGGGTT------SSS-CCCHHHHHHHHH
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHC------CCC-CCCCHHHHHHHH
T ss_conf             9998677856999457532332012221687777653022234456799856477505------676-666145677888


Q ss_pred             HHCHHHHHHHHHHHHHCCCEEE
Q ss_conf             7198999999999998698261
Q gi|254780180|r  327 FCGIEETKKMYQHAISHAYRFY  348 (360)
Q Consensus       327 f~G~~~~~~~Y~~Ai~~~yrF~  348 (360)
                      ++ |+.+.+.|...+..+.|.+
T Consensus       186 ~I-r~~l~~~~~~~~~~~v~Il  206 (259)
T 2i9e_A          186 AL-RQWICENIDAKVGNSIRIQ  206 (259)
T ss_dssp             HH-HHHHHHHTCHHHHHHCEEE
T ss_pred             HH-HHHHHHCCCHHHCCCCCEE
T ss_conf             99-9888630145453678688


No 39 
>>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} (S:1-180)
Probab=26.47  E-value=41  Score=14.20  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=38.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECH-HHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             5530378731656657887410135667700077859-999999987537980999628789989999852898468887
Q gi|254780180|r  213 IKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDA-PTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSG  291 (360)
Q Consensus       213 i~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~-~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g  291 (360)
                      -.-++|.+=-|.=|           .+|+..|+.+.. ...+.+.+++.+-+-||||||        |+...|.......
T Consensus        66 ~~~~diliVeG~v~-----------~~~~~~~~~~~~~~~~e~~~~~~~~ak~vVA~Gt--------CA~~GGi~a~~~~  126 (180)
T 1wui_S           66 SPHGFIAVVEGGIP-----------TAANGIYGKVANHTMLDICSRILPKAQAVIAYGT--------CATFGGVQAAKPN  126 (180)
T ss_dssp             CTTCEEEEEESBEE-----------CGGGGTTBEETTEEHHHHHHHHGGGSSEEEEESH--------HHHHCCGGGSTTC
T ss_pred             CCCCEEEEEECCCC-----------CCCCCCEEEECCCHHHHHHHHHHHCCCEEEEEEC--------CHHCCCCCCCCCC
T ss_conf             56775999836776-----------7665302444780499999998404988999842--------0202796556799


Q ss_pred             CC
Q ss_conf             22
Q gi|254780180|r  292 FT  293 (360)
Q Consensus       292 ~T  293 (360)
                      .|
T Consensus       127 ~t  128 (180)
T 1wui_S          127 PT  128 (180)
T ss_dssp             TT
T ss_pred             CC
T ss_conf             76


No 40 
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235)
Probab=26.45  E-value=32  Score=15.00  Aligned_cols=74  Identities=15%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHCCCCEEEEE--------------ECCCCC-CCC-CCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEE
Q ss_conf             9999999972155303787--------------316566-578-874101356677000778599999999875379809
Q gi|254780180|r  202 SNLLSRLISIGIKVYFVTL--------------HVGAGT-FMP-VKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRI  265 (360)
Q Consensus       202 ~~ll~~L~~kGi~~~~iTL--------------HVG~GT-F~P-i~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rI  265 (360)
                      .++|++|+++|++++=+|=              +.|+.- |.- +.++++...|-|.+.|.      ..+.+..-...++
T Consensus        20 ~e~L~~L~~~G~~l~i~TN~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~KP~~~~~~------~~~~~~~~~p~~~   93 (150)
T 2om6_A           20 KEALQFVKERGLKTAVIGNVXFWPGSYTRLLLERFGLXEFIDKTFFADEVLSYKPRKEXFE------KVLNSFEVKPEES   93 (150)
T ss_dssp             HHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHH------HHHHHTTCCGGGE
T ss_pred             HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH------HHHHHHCCCCCCC
T ss_conf             9999999871881433115776628999999876400222223334334466674157777------8999960333224


Q ss_pred             EEECHHHHHHHHHHHH
Q ss_conf             9962878998999985
Q gi|254780180|r  266 VSVGTTSLRLLETATT  281 (360)
Q Consensus       266 iAVGTT~~R~LEs~~~  281 (360)
                      +.||-+...=+++|..
T Consensus        94 i~VGD~~~~Di~~A~~  109 (150)
T 2om6_A           94 LHIGDTYAEDYQGARK  109 (150)
T ss_dssp             EEEESCTTTTHHHHHH
T ss_pred             EEECCCCHHHHHHHHH
T ss_conf             0443672866999998


No 41 
>>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A (A:)
Probab=26.31  E-value=41  Score=14.18  Aligned_cols=83  Identities=8%  Similarity=-0.031  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC-----HHHH-HHHHHHHHCCCEEEEECHHHHH
Q ss_conf             999999999721553037873165665788741013566770007785-----9999-9999875379809996287899
Q gi|254780180|r  201 TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID-----APTA-QALNSVKSRGGRIVSVGTTSLR  274 (360)
Q Consensus       201 t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~-----~~~~-~~I~~ak~~g~rIiAVGTT~~R  274 (360)
                      ..+.+..|++.|+.++-=-.--|.+.|.-+..-.+.--+++..+..--     ...+ ..+.-++..|-+|||-|-.+..
T Consensus       155 ~~~~~~~l~~~G~~laldd~g~~~~~~~~l~~l~~~~ikid~~~~~~~~~~~~~~~~~~~~~~a~~~~~~via~gVe~~~  234 (268)
T 3hv8_A          155 AKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSIVPFVESAS  234 (268)
T ss_dssp             HHHHHHHHHHTTCEEEEEEETCSSSTTGGGGTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEEEECCCCSHH
T ss_pred             HHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf             88888777654200354048887663667777777786326888864300200679999999999849968999379499


Q ss_pred             HHHHHHHCC
Q ss_conf             899998528
Q gi|254780180|r  275 LLETATTED  283 (360)
Q Consensus       275 ~LEs~~~~~  283 (360)
                      .++.+...+
T Consensus       235 ~~~~l~~~G  243 (268)
T 3hv8_A          235 VLATLWQAG  243 (268)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHCC
T ss_conf             999999769


No 42 
>>1wde_A Probable diphthine synthase; structural genomics, conserved hypothetical protein, riken structural genomics/proteomics initiative, RSGI; 2.00A {Aeropyrum pernix} (A:1-120)
Probab=26.24  E-value=21  Score=16.22  Aligned_cols=107  Identities=14%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             CCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCC-CCC
Q ss_conf             6985799705788740699996035577249997267863000254420357852221234565211433101345-675
Q gi|254780180|r  110 KKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTYA-KIQ  188 (360)
Q Consensus       110 k~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA-~~~  188 (360)
                      +.|......-+.+...++.+..+.......++........+.+.+....+.+-..+..+.  .+....+..+-+.. ...
T Consensus         6 ~~g~l~~VG~GpG~~~lT~~a~~~L~~ad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   83 (120)
T 1wde_A            6 EAVTLLLVGWGYAPGXQTLEALDAVRRADVVYVESYTXPGSSWLYKSVVEAAGEARVVEA--SRRDLEERSREIVSRALD   83 (120)
T ss_dssp             CCCEEEEEECBSSTTCCCHHHHHHHHHCSEEEEECSSSTTCHHHHHHHHHHHTSSSEEEC--CHHHHHTSHHHHTCCSSC
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHHC
T ss_conf             761899999647950788999999986999999067772453332656776167623245--535599999999999737


Q ss_pred             CCCCCCCCCCCC--C--HHHHHHHHHHCCCCEEE
Q ss_conf             740055568878--9--99999999721553037
Q gi|254780180|r  189 GSVAAPTAGLHF--T--SNLLSRLISIGIKVYFV  218 (360)
Q Consensus       189 GSVAAPTAGLHF--t--~~ll~~L~~kGi~~~~i  218 (360)
                      |-|+.-+.|=.+  +  ..+++.+++.|+++.-|
T Consensus        84 ~~V~~l~~GDP~iy~~~~~l~~~~~~~g~~v~vi  117 (120)
T 1wde_A           84 AVVAVVTAGDPXVATTHSSLAAEALEAGVAVRYI  117 (120)
T ss_dssp             CEEEEEESBCTTSSSSHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf             9959996689864543999999998458967980


No 43 
>>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286)
Probab=26.10  E-value=42  Score=14.15  Aligned_cols=16  Identities=25%  Similarity=0.530  Sum_probs=14.0

Q ss_pred             EEEEECHHHHHHHHHH
Q ss_conf             0999628789989999
Q gi|254780180|r  264 RIVSVGTTSLRLLETA  279 (360)
Q Consensus       264 rIiAVGTT~~R~LEs~  279 (360)
                      +.+|+|-|+.|+||+.
T Consensus       102 K~~aiGptt~ral~a~  117 (147)
T 1jr2_A          102 KFAAIGPTTARALAAQ  117 (147)
T ss_dssp             EEEESSHHHHHHHHHT
T ss_pred             EEEEECHHHHHHHHHC
T ss_conf             9999999999999976


No 44 
>>3knz_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.50A {Salmonella enterica subsp} (A:34-182)
Probab=25.87  E-value=42  Score=14.13  Aligned_cols=42  Identities=12%  Similarity=0.024  Sum_probs=25.5

Q ss_pred             CHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCC
Q ss_conf             5999999998753798099962878998999985289846888722366574096
Q gi|254780180|r  248 DAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYR  302 (360)
Q Consensus       248 ~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~  302 (360)
                      ++++.+.++.+|++|-++|+|-             +..-.+.....|+.|+.+..
T Consensus        77 t~~~~~~~~~ak~~g~~~i~iT-------------~~~~s~l~~~ad~~i~~~~~  118 (149)
T 3knz_A           77 SLSTLAAXERARNVGHITASXA-------------GVAPATIDRAADYILTVPCG  118 (149)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEE-------------SSSSCGGGGGCSEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCC-------------CCCCCHHHHCCCCHHCCCCC
T ss_conf             8899999987665202202578-------------87862766304500114434


No 45 
>>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} (A:1-127)
Probab=25.87  E-value=42  Score=14.13  Aligned_cols=20  Identities=10%  Similarity=0.132  Sum_probs=11.2

Q ss_pred             HHHHH-HCCCCCCCCCEEEEC
Q ss_conf             01122-115643698579970
Q gi|254780180|r   99 WSVYA-RPSKVIKKGDILHFF  118 (360)
Q Consensus        99 w~~l~-kp~kklk~G~~l~~~  118 (360)
                      |.-++ +-...+++|+.+.+.
T Consensus        62 ~~~~~~~f~~~l~~G~vy~I~   82 (127)
T 1jmc_A           62 FNEQVDKFFPLIEVNKVYYFS   82 (127)
T ss_dssp             EHHHHHHHGGGCCTTCEEEEE
T ss_pred             ECCCCHHCCCCEECCCEEEEC
T ss_conf             044300001113047399988


No 46 
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:1-115,A:523-619)
Probab=25.51  E-value=42  Score=14.10  Aligned_cols=61  Identities=25%  Similarity=0.288  Sum_probs=38.2

Q ss_pred             CCCCCCCCC-----CHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEE
Q ss_conf             055568878-----999999999721553037873165665788741013566770007785999999998753798099
Q gi|254780180|r  192 AAPTAGLHF-----TSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIV  266 (360)
Q Consensus       192 AAPTAGLHF-----t~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIi  266 (360)
                      -=||+||.-     -.++|.+|+++|+.+..||.....-       .++.|..      .|       .+.+.-++|||+
T Consensus       124 DEPtsgLDp~~~~~i~~li~~l~~~g~Tii~vTHdl~ea-------~~i~Dri------vv-------~~~ail~~G~iv  183 (212)
T 2r6f_A          124 DEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEHDEDTX-------LAADYLI------DI-------GPGAGIHGGEVV  183 (212)
T ss_dssp             ECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH-------HSCSEEE------EE-------CSSSGGGCCSEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH-------HHHCEEE------EE-------CCCCEEEEECCC
T ss_conf             583145689999999999999997597489972428898-------6531223------32-------277168642313


Q ss_pred             EECHHH
Q ss_conf             962878
Q gi|254780180|r  267 SVGTTS  272 (360)
Q Consensus       267 AVGTT~  272 (360)
                      +.||+-
T Consensus       184 ~~Gt~~  189 (212)
T 2r6f_A          184 AAGTPE  189 (212)
T ss_dssp             EEECTT
T ss_pred             CCCCHH
T ss_conf             148999


No 47 
>>2nlz_A Cephalosporin acylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.70A {Bacillus halodurans} (A:470-507)
Probab=24.46  E-value=44  Score=13.95  Aligned_cols=18  Identities=22%  Similarity=0.421  Sum_probs=15.3

Q ss_pred             CCCHHHHHHHHHHCCCCE
Q ss_conf             789999999997215530
Q gi|254780180|r  199 HFTSNLLSRLISIGIKVY  216 (360)
Q Consensus       199 HFt~~ll~~L~~kGi~~~  216 (360)
                      +|.+++++.|+.+|+++.
T Consensus        15 ~~p~~i~~~L~~rGH~I~   32 (38)
T 2nlz_A           15 TFPVDIAQALVRRGHKIQ   32 (38)
T ss_dssp             TSCHHHHHHHHHTTCEEE
T ss_pred             CCCHHHHHHHHHCCCEEE
T ss_conf             999999999998699138


No 48 
>>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} (A:1-215,A:280-317)
Probab=23.85  E-value=45  Score=13.91  Aligned_cols=48  Identities=29%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             HCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCC
Q ss_conf             10134567574--00555688789999999997215-5303787316566578874
Q gi|254780180|r  180 YQTTYAKIQGS--VAAPTAGLHFTSNLLSRLISIGI-KVYFVTLHVGAGTFMPVKV  232 (360)
Q Consensus       180 YQTVyA~~~GS--VAAPTAGLHFt~~ll~~L~~kGi-~~~~iTLHVG~GTF~Pi~~  232 (360)
                      ..+-|-...|+  .-||.     -+.|+.+++.-|. .+.++-||||+..|.-|.+
T Consensus       201 ~~~rfvp~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (253)
T 1dl5_A          201 LETRFITAGGNLGNLAPE-----IENLLTQWESCGYRSFEYLMLHVGYNAFSHISC  251 (253)
T ss_dssp             EECCCCBCCGGGSCHCHH-----HHHHHHHHHHTTTCCGGGSEEEEESSSCCEEEC
T ss_pred             CEEEEEECCCCCCCCCHH-----HHHHHHHHHHCCCCCHHHCCEEEECCEEEEEEE
T ss_conf             307999655874544589-----999999999759987455571870573589987


No 49 
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=23.83  E-value=31  Score=15.05  Aligned_cols=100  Identities=15%  Similarity=0.128  Sum_probs=51.3

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCC-CHHEEE--CHHHHHH-H
Q ss_conf             10134567574005556887899999999972155303787316566578874101356677-000778--5999999-9
Q gi|254780180|r  180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH-SEIGFI--DAPTAQA-L  255 (360)
Q Consensus       180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH-~E~~~i--~~~~~~~-I  255 (360)
                      |+.|+-...|-..--+--..=+.+.|++|+++|++++.+|=--|-. . +.-.+.+...-+. .....+  .++.... +
T Consensus         5 ~k~i~~D~Dgtl~~~~~~~~~~~e~l~~l~~~G~~~~i~Tn~s~~~-~-~~~~~~l~~lgi~~~~~~~~~~~p~~~~~~~   82 (154)
T 3epr_A            5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRT-P-ESVQEMLRGFNVETPLETIYTANAIIMNKAL   82 (154)
T ss_dssp             CCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSC-H-HHHHHHHHTTTCCCCGGGEEEHSHHHHHHHH
T ss_pred             CCEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCC-H-HHHHHHHHHCCCCCCHHHCCCHCHHHHHHHH
T ss_conf             8999993878328799828259999999998799889993899999-9-9999987531655431210235205666555


Q ss_pred             HHHHHCCCEEEEECHHHHHHHHHHHH
Q ss_conf             98753798099962878998999985
Q gi|254780180|r  256 NSVKSRGGRIVSVGTTSLRLLETATT  281 (360)
Q Consensus       256 ~~ak~~g~rIiAVGTT~~R~LEs~~~  281 (360)
                      .+......+++-||=...--++.|.+
T Consensus        83 ~~~~~~~~~~~~VgD~~~~Di~~A~~  108 (154)
T 3epr_A           83 EILNIPRNQAVMVGDNYLTDIMAGIN  108 (154)
T ss_dssp             HHHTSCGGGEEEEESCTTTHHHHHHH
T ss_pred             HHHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf             65326866089997995799999998


No 50 
>>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} (A:1-151,A:194-243)
Probab=23.78  E-value=46  Score=13.86  Aligned_cols=79  Identities=20%  Similarity=0.138  Sum_probs=52.7

Q ss_pred             CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC----CCCCCHHEEECHHHHHHHHHHHHCCCEEE------
Q ss_conf             88789999999997215530378731656657887410135----66770007785999999998753798099------
Q gi|254780180|r  197 GLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD----HIMHSEIGFIDAPTAQALNSVKSRGGRIV------  266 (360)
Q Consensus       197 GLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~----h~mH~E~~~i~~~~~~~I~~ak~~g~rIi------  266 (360)
                      |.-+++++++..+++ ..-..+++.++-.+-.|...+..+=    +.+  ++..=+....+.+.+.-+.||+++      
T Consensus        71 gvDiS~~~i~~a~~~-~~~~~i~~~~~D~~~~~~~~~~fD~V~~~~~L--~~l~d~~~~L~ei~rvLkPGG~lils~~~p  147 (201)
T 3bkw_A           71 GLDLSEKXLARARAA-GPDTGITYERADLDKLHLPQDSFDLAYSSLAL--HYVEDVARLFRTVHQALSPGGHFVFSTEHP  147 (201)
T ss_dssp             EEESCHHHHHHHHHT-SCSSSEEEEECCGGGCCCCTTCEEEEEEESCG--GGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE--EECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             445432222222222-22222222222222222222320023554114--414799999999999719997799997478


Q ss_pred             ---EECHHHHHHHHH
Q ss_conf             ---962878998999
Q gi|254780180|r  267 ---SVGTTSLRLLET  278 (360)
Q Consensus       267 ---AVGTT~~R~LEs  278 (360)
                         +||||.--.+-|
T Consensus       148 ~~~~~~~~~~~~~~~  162 (201)
T 3bkw_A          148 IYXAVGTTLNALIRS  162 (201)
T ss_dssp             HHHCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHC
T ss_conf             742499999999987


No 51 
>>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (D:184-271)
Probab=23.66  E-value=22  Score=16.21  Aligned_cols=10  Identities=10%  Similarity=0.498  Sum_probs=3.9

Q ss_pred             CHHHHHHHHH
Q ss_conf             3000254420
Q gi|254780180|r  149 ELERQISLVG  158 (360)
Q Consensus       149 ~~~~~L~~~G  158 (360)
                      ++...|.++|
T Consensus        50 ~~m~~l~~lg   59 (88)
T 3bbo_D           50 DMMAKVASLG   59 (88)
T ss_dssp             SSHHHHGGGG
T ss_pred             HHHHHHHHHH
T ss_conf             4555553431


No 52 
>>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} (A:72-167)
Probab=23.23  E-value=47  Score=13.79  Aligned_cols=81  Identities=7%  Similarity=0.052  Sum_probs=38.2

Q ss_pred             CCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCCCEEEEEEE-CCCCCC
Q ss_conf             9878120313566378887531531014347872698879999479568889987640467777650589981-124866
Q gi|254780180|r   19 PVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLH-MRVSPN   97 (360)
Q Consensus        19 P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g~~ieill~-~~~~~~   97 (360)
                      |..-+...++-+.-....+....-.-.+.+|.+.+++||-+-+.|-++                    ++.+. ...+..
T Consensus        11 ~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~IlidDG~i--------------------~l~v~~v~~~~~   70 (96)
T 2e28_A           11 AIELKEGSKLVISMSEVLGTPEKISVTYPSLIDDVSVGAKILLDDGLI--------------------SLEVNAVDKQAG   70 (96)
T ss_dssp             CBCCCSSCEEEEESSCCCCCSSEEEBSCTTSTTTCCTTCEEEETTTTE--------------------EEEEEEEETTTT
T ss_pred             EEEECCCCEEEEECCCCCCCCCEEEECCHHHHHHCCCCCEEEEECCCC--------------------EEEEEEEECCCC
T ss_conf             289558999999678868975689704278786557998677642653--------------------499988604420


Q ss_pred             CHHHHHHCCCCCCCCCEEEECC
Q ss_conf             1011221156436985799705
Q gi|254780180|r   98 SWSVYARPSKVIKKGDILHFFS  119 (360)
Q Consensus        98 ~w~~l~kp~kklk~G~~l~~~~  119 (360)
                      .+.|.+..++.++...-+.|++
T Consensus        71 ~v~~~v~~~G~l~s~KgvnlPg   92 (96)
T 2e28_A           71 EIVTTVLNGGVLKNKKGVNVPG   92 (96)
T ss_dssp             EEEEECCSCCCBCSSCBEECTT
T ss_pred             EEEEEECCCEEECCCCCEECCC
T ss_conf             7999950141644998266389


No 53 
>>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} (A:1-276)
Probab=22.76  E-value=35  Score=14.67  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=25.2

Q ss_pred             CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECC
Q ss_conf             555688789-----9999999972155303787316
Q gi|254780180|r  193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVG  223 (360)
Q Consensus       193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG  223 (360)
                      =|||||-..     .++|.+|+++|..+..+|.+..
T Consensus       184 EPtsgLD~~~~~~i~~~l~~L~~~g~tIiiisHdl~  219 (276)
T 1yqt_A          184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA  219 (276)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHH
T ss_conf             312368999999999998876542010542120189


No 54 
>>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* (C:)
Probab=22.64  E-value=30  Score=15.20  Aligned_cols=64  Identities=17%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             CCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE
Q ss_conf             5556887899-----99999997215530378731656657887410135667700077859999999987537980999
Q gi|254780180|r  193 APTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS  267 (360)
Q Consensus       193 APTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA  267 (360)
                      =|||||--..     +++++|+++|+.+..+|.+...-       ..+.|+.      .+            -++|+|++
T Consensus       159 EPtsgLD~~~~~~i~~li~~l~~~g~tIi~vtHdl~~~-------~~~~drv------~v------------l~~G~ii~  213 (249)
T 2qi9_C          159 EPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHT-------LRHAHRA------WL------------LKGGKXLA  213 (249)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-------HHHCSEE------EE------------EETTEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH-------HHHCCEE------EE------------EECCEEEE
T ss_conf             87666898999999999999997798899971899999-------9969999------99------------98998999


Q ss_pred             ECHHHH----HHHHHHHH
Q ss_conf             628789----98999985
Q gi|254780180|r  268 VGTTSL----RLLETATT  281 (360)
Q Consensus       268 VGTT~~----R~LEs~~~  281 (360)
                      .|++.-    ..++.++.
T Consensus       214 ~g~~~ei~~~~~l~~~y~  231 (249)
T 2qi9_C          214 SGRREEVLTPPNLAQAYG  231 (249)
T ss_dssp             EEEHHHHSCHHHHHHHHS
T ss_pred             ECCHHHHHCCHHHHHHHC
T ss_conf             889999808988999848


No 55 
>>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} (A:183-315)
Probab=22.64  E-value=48  Score=13.71  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=17.7

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHCCCCEEE
Q ss_conf             40055568878999999999721553037
Q gi|254780180|r  190 SVAAPTAGLHFTSNLLSRLISIGIKVYFV  218 (360)
Q Consensus       190 SVAAPTAGLHFt~~ll~~L~~kGi~~~~i  218 (360)
                      -|.||    .||++-++-|++|.+.+-.+
T Consensus       106 viiAP----~~~~eAleiL~kKnlRil~~  130 (133)
T 1zcz_A          106 VIVAP----SFTQEAIEVLSKKKVRLLKP  130 (133)
T ss_dssp             EEECS----CBCHHHHHHHTTSSCEEEEE
T ss_pred             EEEEC----CCCHHHHHHHHHCCCHHHCC
T ss_conf             99965----86567788873155201023


No 56 
>>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Probab=22.60  E-value=36  Score=14.63  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=26.8

Q ss_pred             CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf             555688789-----999999997215530378731656
Q gi|254780180|r  193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAG  225 (360)
Q Consensus       193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~G  225 (360)
                      -|||||.-.     .+++.+++++|+.+..||.+.-.-
T Consensus       166 EPTs~LD~~~~~~v~~~l~~l~~~g~tii~vtHd~e~~  203 (224)
T 2pcj_A          166 EPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA  203 (224)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf             88779999999999999999996299899995779999


No 57 
>>2obb_A Hypothetical protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=22.24  E-value=40  Score=14.29  Aligned_cols=23  Identities=9%  Similarity=-0.010  Sum_probs=10.5

Q ss_pred             EECHHHHHHHHHHHHCCCEEEEE
Q ss_conf             78599999999875379809996
Q gi|254780180|r  246 FIDAPTAQALNSVKSRGGRIVSV  268 (360)
Q Consensus       246 ~i~~~~~~~I~~ak~~g~rIiAV  268 (360)
                      .+-+.+.+.+...|++|-+++-+
T Consensus        24 ~~~pgv~e~L~~Lk~~G~~i~i~   46 (142)
T 2obb_A           24 EEIPFAVETLKLLQQEKHRLILW   46 (142)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEC
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEE
T ss_conf             73399999999999879939999


No 58 
>>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II} (A:)
Probab=21.83  E-value=47  Score=13.75  Aligned_cols=126  Identities=19%  Similarity=0.267  Sum_probs=67.7

Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHH----EEECHHHHHHH
Q ss_conf             10134567574005556887899999999972155303787316566578874101356677000----77859999999
Q gi|254780180|r  180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI----GFIDAPTAQAL  255 (360)
Q Consensus       180 YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~----~~i~~~~~~~I  255 (360)
                      -|.|++...|+---     +.++++|.+   -|+++..|      |               |+|.    .+..+...+++
T Consensus        86 AQnv~~~~~Ga~TG-----EiS~~mL~d---~G~~~viI------G---------------HSERR~~f~E~~~~i~~Kv  136 (271)
T 3krs_A           86 SQNISCTGNGAFTG-----EVSCEMLKD---MDVDCSLV------G---------------HSERRQYYSETDQIVNNKV  136 (271)
T ss_dssp             BSCCCSSCSBSCTT-----CCCHHHHHH---TTCCEEEE------S---------------CHHHHHHSCCCHHHHHHHH
T ss_pred             HHCCCCCCCCCCCC-----CCCHHHHHH---HCCCEEEE------C---------------CCCCEECCCCCCHHHHHHH
T ss_conf             43142101232012-----323888887---46563454------1---------------4102101246568898899


Q ss_pred             HHHHHCCC-EEEEECHHH------------HHHHHHHHHCCCCCCCCCCCCCEEEC--CCCCCEEEEEEEECCCCCHHHH
Q ss_conf             98753798-099962878------------99899998528984688872236657--4096114312552775545789
Q gi|254780180|r  256 NSVKSRGG-RIVSVGTTS------------LRLLETATTEDGIINPWSGFTNIFIT--PGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       256 ~~ak~~g~-rIiAVGTT~------------~R~LEs~~~~~~~~~~~~g~T~lfI~--Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
                      +.|.+.|= .|+|||.|.            .+-|+.+.      .....+.++.|-  |-+-..      |+ -.|-...
T Consensus       137 ~~al~~gl~pIvCvGE~~e~re~~~~~~~v~~Ql~~~~------~~~~~~~~ivIAYEPvWAIG------tg-~~as~~~  203 (271)
T 3krs_A          137 KKGLENGLKIVLCIGESLSERETGKTNDVIQKQLTEAL------KDVSDLSNLVIAYEPIWAIG------TG-VVATPGQ  203 (271)
T ss_dssp             HHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHT------TTCCCCTTEEEEECCGGGSS------SS-CCCCHHH
T ss_pred             HHHHHHCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHH------CCCCCCCEEEEEECCHHHCC------CC-CCCCCCH
T ss_conf             99886257068983441665300147777777676530------35356650899965244216------78-6676310


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEE
Q ss_conf             9999987198999999999998698261
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFY  348 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~  348 (360)
                      .--+.+|+ |+.+.+.|...+..+.|..
T Consensus       204 i~~v~~~I-r~~l~~~~~~~~~~~v~il  230 (271)
T 3krs_A          204 AQEAHAFI-REYVTRMYNPQVSSNLRII  230 (271)
T ss_dssp             HHHHHHHH-HHHHHHHSCHHHHHHCCEE
T ss_pred             HHHHHHHH-HHHHHHHCCHHHCCCCCEE
T ss_conf             02468899-9999876073132676388


No 59 
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161)
Probab=21.48  E-value=51  Score=13.55  Aligned_cols=36  Identities=14%  Similarity=0.030  Sum_probs=24.6

Q ss_pred             HEEECHHHHHHHHHHH----------HCCCEEEEECHHHHHHHHHH
Q ss_conf             0778599999999875----------37980999628789989999
Q gi|254780180|r  244 IGFIDAPTAQALNSVK----------SRGGRIVSVGTTSLRLLETA  279 (360)
Q Consensus       244 ~~~i~~~~~~~I~~ak----------~~g~rIiAVGTT~~R~LEs~  279 (360)
                      -++.|..+++...+.-          -.+-+|+|||-.+.++|+..
T Consensus        16 iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~   61 (114)
T 1wcw_A           16 FLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA   61 (114)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT
T ss_pred             EEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHC
T ss_conf             9997989999999999873964767841885999978999999974


No 60 
>>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} (A:)
Probab=21.40  E-value=40  Score=14.29  Aligned_cols=55  Identities=18%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             CCCCCCCCC-----HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEE
Q ss_conf             555688789-----999999997215530378731656657887410135667700077859999999987537980999
Q gi|254780180|r  193 APTAGLHFT-----SNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVS  267 (360)
Q Consensus       193 APTAGLHFt-----~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiA  267 (360)
                      =||+||--.     .+++.+|+++|..+..||.++..-       ..+-|+      +-|            -++|++++
T Consensus       164 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~-------~~~adr------i~v------------l~~G~iv~  218 (266)
T 2yz2_A          164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV-------INHVDR------VVV------------LEKGKKVF  218 (266)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT-------GGGCSE------EEE------------EETTEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH-------HHHCCE------EEE------------EECCEEEE
T ss_conf             78677787889999999986541694899994899999-------996999------999------------98998999


Q ss_pred             ECHHH
Q ss_conf             62878
Q gi|254780180|r  268 VGTTS  272 (360)
Q Consensus       268 VGTT~  272 (360)
                      -||..
T Consensus       219 ~G~~~  223 (266)
T 2yz2_A          219 DGTRM  223 (266)
T ss_dssp             EEEHH
T ss_pred             ECCHH
T ss_conf             88999


No 61 
>2k1g_A Solution Nmr Structure Of Lipoprotein Spr {Escherichia Coli K12.} (A:)
Probab=21.15  E-value=49  Score=13.67  Aligned_cols=14  Identities=21%  Similarity=0.529  Sum_probs=6.5

Q ss_pred             CCCCCCCCEEEECC
Q ss_conf             56436985799705
Q gi|254780180|r  106 SKVIKKGDILHFFS  119 (360)
Q Consensus       106 ~kklk~G~~l~~~~  119 (360)
                      ...+++||.|.|..
T Consensus        65 ~~~~~pGDlif~~~   78 (135)
T 2k1g_A           65 RSNLRTGDLVLFRA   78 (135)
T ss_dssp             GGGCCTTEEEEEEE
T ss_pred             CCCCCCCCEEEECC
T ss_conf             35788761888679


No 62 
>>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:)
Probab=20.62  E-value=50  Score=13.61  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=39.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH----HEEECHHHHHHHH
Q ss_conf             013456757400555688789999999997215530378731656657887410135667700----0778599999999
Q gi|254780180|r  181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE----IGFIDAPTAQALN  256 (360)
Q Consensus       181 QTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E----~~~i~~~~~~~I~  256 (360)
                      |.|+....|+--     =+.+.++|..+   |++.+.|    |                 |+|    +.+......+++.
T Consensus        66 Qnv~~~~~Ga~T-----GeiS~~mL~d~---G~~~vli----G-----------------HSERR~~f~E~d~~i~~Kv~  116 (256)
T 1aw2_A           66 QNTDLNNSGAFT-----GDMSPAMLKEF---GATHIII----G-----------------HSERREYHAESDEFVAKKFA  116 (256)
T ss_dssp             SCCCSCSSBSCT-----TCCCHHHHHHH---TCCEEEE----S-----------------CHHHHHHSCCCHHHHHHHHH
T ss_pred             CCCHHHCCCCCC-----CCCCHHHHHHH---HCCEEEE----C-----------------CCCCCCCCCCCHHHHHHHHH
T ss_conf             101011155411-----20139988643---0231443----1-----------------52344443532899999999


Q ss_pred             HHHHCCC-EEEEECHHH
Q ss_conf             8753798-099962878
Q gi|254780180|r  257 SVKSRGG-RIVSVGTTS  272 (360)
Q Consensus       257 ~ak~~g~-rIiAVGTT~  272 (360)
                      .+++.|- .|+|||.|.
T Consensus       117 ~al~~gl~pivCiGE~~  133 (256)
T 1aw2_A          117 FLKENGLTPVLCIGESD  133 (256)
T ss_dssp             HHHHHTCEEEEEECCCH
T ss_pred             HHHHHCCCEEEEECCCC
T ss_conf             99872264599805643


No 63 
>>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187)
Probab=20.28  E-value=53  Score=13.38  Aligned_cols=35  Identities=14%  Similarity=0.042  Sum_probs=21.6

Q ss_pred             EEECHHHHHHHHHHHH----------CCCEEEEECHHHHHHHHHH
Q ss_conf             7785999999998753----------7980999628789989999
Q gi|254780180|r  245 GFIDAPTAQALNSVKS----------RGGRIVSVGTTSLRLLETA  279 (360)
Q Consensus       245 ~~i~~~~~~~I~~ak~----------~g~rIiAVGTT~~R~LEs~  279 (360)
                      ++.|...++...+.-.          .+-+|+|||-.+.++|+..
T Consensus        18 ifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~   62 (116)
T 3d8t_A           18 LATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA   62 (116)
T ss_dssp             EECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT
T ss_pred             EEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHC
T ss_conf             998879999999999980975546631786999870189999987


No 64 
>>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:1-104)
Probab=20.14  E-value=54  Score=13.36  Aligned_cols=28  Identities=7%  Similarity=0.067  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHCCCEEEEECHHHHHHHHH
Q ss_conf             9999998753798099962878998999
Q gi|254780180|r  251 TAQALNSVKSRGGRIVSVGTTSLRLLET  278 (360)
Q Consensus       251 ~~~~I~~ak~~g~rIiAVGTT~~R~LEs  278 (360)
                      ++..++.++.-|-+.+||=|..=|.-..
T Consensus        13 A~Ri~rt~~elgi~tvav~s~~D~~~~~   40 (104)
T 2vpq_A           13 AVRIIRACRDLGIQTVAIYSEGDKDALH   40 (104)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEGGGTTCHH
T ss_pred             HHHHHHHHHHCCCEEEEECCCHHHCCCC
T ss_conf             9999999998799499986816746899


No 65 
>>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain, hydrolase, signaling protein; HET: C2E FMN; 2.05A {Klebsiella pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A* 2kb2_A* (A:150-413)
Probab=20.03  E-value=54  Score=13.34  Aligned_cols=86  Identities=15%  Similarity=0.104  Sum_probs=59.0

Q ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEE---C----HHHHHHHHHHHHCCCEEEEECH
Q ss_conf             87899999999972155303787316566578874101356677000778---5----9999999987537980999628
Q gi|254780180|r  198 LHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFI---D----APTAQALNSVKSRGGRIVSVGT  270 (360)
Q Consensus       198 LHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i---~----~~~~~~I~~ak~~g~rIiAVGT  270 (360)
                      ..--..++++|++.|+.++-=....|..+|.-+..-.+.--|++...+..   +    .-.-..++-++..|-.|||=|-
T Consensus       141 ~~~~~~~l~~l~~~G~~i~ldd~g~~~~~~~~l~~~~~~~iKid~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~viaegV  220 (264)
T 3gfz_A          141 FDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGV  220 (264)
T ss_dssp             STTHHHHHHHHHHHTCEEEEEEETSSSCSHHHHTTCCCSEEEECHHHHTTTTTBHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             68899999998853875355577887104899985899999989899841045966899999999999985998999718


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             7899899998528
Q gi|254780180|r  271 TSLRLLETATTED  283 (360)
Q Consensus       271 T~~R~LEs~~~~~  283 (360)
                      -+-..++.+...+
T Consensus       221 e~~~~~~~l~~~g  233 (264)
T 3gfz_A          221 ETLEEWCWLQSVG  233 (264)
T ss_dssp             CSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCC
T ss_conf             8299999999779


Done!