HHsearch results for GI: 254780180 and protein with PDBid: 1vky_A
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=100.00 E-value=0 Score=1022.95 Aligned_cols=335 Identities=42% Similarity=0.683 Sum_probs=317.8
Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360)
Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360)
|+||||||+||+|||||+|+++||+|||||++++++ .|.|+.|+||++||+||||||||||||+||||+|+|
T Consensus 13 Mklsdfdy~LP~elIAq~P~~~Rd~SRLLVl~~~~~---~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k----- 84 (347)
T 1vky_A 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK----- 84 (347)
T ss_dssp ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC-----
T ss_pred EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf 588783989895996689999965144889988999---077756765686479998999979989887998774-----
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360)
Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360)
.+|++||++++++.+++.|.|++||+||+|+|+++.+.+ .+.++++++.+.+.+.+.|+.+ .+++|+++|+|
T Consensus 85 ~tgg~vEill~~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~ 156 (347)
T 1vky_A 85 KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRT 156 (347)
T ss_dssp ---CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC--
T ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEECCCC---HHHHHHHCCCC
T ss_conf 379709999977528983999974076789998899605-----6348999971476078851774---26899977999
Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360)
Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360)
||||||+| + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus 157 PLPPYI~r--~---~d~erYQTVyAk~~GSVAAPTAGLHFT~~ll~~L~~kGv~~~~vTLHVG~GTF~Pv~~e~i~~H~m 231 (347)
T 1vky_A 157 PLPPYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 231 (347)
T ss_dssp ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred CCCCEEEC--C---CCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99961745--6---418878788714898553677878779999999998499267789986467546764443455788
Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf 70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL 320 (360)
Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl 320 (360)
|+|||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+|||||
T Consensus 232 H~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~RaLEs~~~-~~~~~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlPkSTL 310 (347)
T 1vky_A 232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 310 (347)
T ss_dssp CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred CCEEEEECHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf 65589937999999999997189489995418999999875-13677778861559789998728276343573783589
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf 9999987198999999999998698261101022233
Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360)
Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360)
|||||||+|+++++++|++||+++||||||||||||+
T Consensus 311 l~LvsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLil 347 (347)
T 1vky_A 311 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 347 (347)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf 9999985896999999999998799601502230109