HHSEARCH alignment of GI: 254780180 and SCOP domain: d1vkya_

Alignment
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=1014.50  Aligned_cols=332  Identities=42%  Similarity=0.683  Sum_probs=314.4

Q ss_pred             CCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCC
Q ss_conf             33588889778616998781203135663788875315310143478726988799994795688899876404677776
Q gi|254780180|r    4 KEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRRE   83 (360)
Q Consensus         4 sdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g   83 (360)
                      |||||+||++||||+|+++||+|||||++++++   .|+|+.|+||++||+||||||||||||+||||+|+|     .+|
T Consensus         1 SdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~tg   72 (332)
T d1vkya_           1 SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK-----KTG   72 (332)
T ss_dssp             CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC--------
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEC-----CCC
T ss_conf             997888993896689999965144888988999---178766765686479998999979989888999982-----456


Q ss_pred             CEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             50589981124866101122115643698579970578874069999603557724999726786300025442035785
Q gi|254780180|r   84 KEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLP  163 (360)
Q Consensus        84 ~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLP  163 (360)
                      ++||++++++.+++.|.|++||+||+|+|+++.+.+     .+.++|+++...+.+.+.|+.+   .+++|+++|+||||
T Consensus        73 gkvEilll~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~PLP  144 (332)
T d1vkya_          73 ASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRTPLP  144 (332)
T ss_dssp             CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC-----
T ss_pred             CCEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECC-----CCEEEEEEECCCCEEEEECCCC---CHHHHHHCCCCCCC
T ss_conf             737688774047846999964666774332887437-----7306999851551267622675---36789866898889


Q ss_pred             HHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             22212345652114331013456757400555688789999999997215530378731656657887410135667700
Q gi|254780180|r  164 PYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE  243 (360)
Q Consensus       164 PYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E  243 (360)
                      |||+|  +   .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+||+|
T Consensus       145 PYI~r--~---~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kgv~~~~iTLHVG~GTF~Pv~~e~i~~h~mh~E  219 (332)
T d1vkya_         145 PYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEE  219 (332)
T ss_dssp             -------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------CCC
T ss_pred             CHHCC--C---CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             31125--4---169999988741278603776667678999999998399457899985244466666442245677510


Q ss_pred             HEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             07785999999998753798099962878998999985289846888722366574096114312552775545789999
Q gi|254780180|r  244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML  323 (360)
Q Consensus       244 ~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L  323 (360)
                      ||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+||||||||
T Consensus       220 ~~~I~~~t~~~i~~ak~~g~rIiAVGTT~~R~LEs~~~-~~~~~~~~G~T~lfI~Pgy~f~~vd~LiTNFHlPkStll~L  298 (332)
T d1vkya_         220 FYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTLLML  298 (332)
T ss_dssp             EEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHHHHH
T ss_pred             EEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCEEECEEEECCCCCCCHHHHH
T ss_conf             02168999999999997299589984689999999997-42356567860469779998618285123684881289999


Q ss_pred             HHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9987198999999999998698261101022233
Q gi|254780180|r  324 VSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       324 v~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||+|+++++++|++||+++||||||||||||+
T Consensus       299 vsAf~g~~~~~~~Y~~Ai~~~yrF~syGDamlil  332 (332)
T d1vkya_         299 VAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  332 (332)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9985796999999999998799523314121119


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermotoga maritima [TaxId: 2336]