HHSEARCH alignment of GI: 254780180 and SCOP domain: d1wdia_

Alignment
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=1021.26  Aligned_cols=340  Identities=44%  Similarity=0.677  Sum_probs=318.5

Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCC
Q ss_conf             86335888897786169987812031356637888753153101434787269887999947956888998764046777
Q gi|254780180|r    2 MVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINR   81 (360)
Q Consensus         2 ~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~   81 (360)
                      -||||||+||++||||+|+++||+|||||++++++.  +|+|+.|+||++||+||||||||||||+||||+|+|     .
T Consensus         2 ~LsdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~~--~I~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~   74 (344)
T d1wdia_           2 GLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----P   74 (344)
T ss_dssp             GGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----T
T ss_pred             CHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----C
T ss_conf             734549997959976899999621128999889998--576332623676479998999989989778999781-----6


Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCC---CCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             765058998112486610112211564369857997057887---40699996035577249997267863000254420
Q gi|254780180|r   82 REKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQ---SRLEATVIDKWNTGEILLVFSISGIELERQISLVG  158 (360)
Q Consensus        82 ~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~---~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G  158 (360)
                      +|++||+++++..+++.|.|++||+||+++|+++.+.+....   ..+.++++.+.+.+.++++|+.   ++.++|+++|
T Consensus        75 tggkvEilll~~~~~~~w~al~kp~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~G  151 (344)
T d1wdia_          75 TGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEVG  151 (344)
T ss_dssp             TSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCCC
T ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEECC---CHHHHHHHHC
T ss_conf             8974999983124897089995336778999889953764322236736999998068847997222---0677788755


Q ss_pred             CCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35785222123456521143310134567574005556887899999999972155303787316566578874101356
Q gi|254780180|r  159 TIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH  238 (360)
Q Consensus       159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h  238 (360)
                      +|||||||+|+     .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++ ++.+|
T Consensus       152 ~~PLPPYI~r~-----~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~~-~~~~H  225 (344)
T d1wdia_         152 EVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKG-DPEKH  225 (344)
T ss_dssp             SCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------
T ss_pred             CCCCCHHHHCC-----HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-CCCCC
T ss_conf             79988023112-----2676566564168987516645577899999999974061567999623443355334-32357


Q ss_pred             CCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHH
Q ss_conf             67700077859999999987537980999628789989999852898468887223665740961143125527755457
Q gi|254780180|r  239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKS  318 (360)
Q Consensus       239 ~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~S  318 (360)
                      +||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+|||
T Consensus       226 ~mH~E~~~i~~~t~~~i~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LlTNFHlP~S  305 (344)
T d1wdia_         226 EMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRS  305 (344)
T ss_dssp             -CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTC
T ss_pred             CCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCC
T ss_conf             88874999839999999999973995899957899999999970898577887568697899977481862446847802


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             899999987198999999999998698261101022233
Q gi|254780180|r  319 TLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       319 tll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 tll~Lv~af~g~~~~~~~Y~~Ai~~~YrF~SyGDamlil  344 (344)
T d1wdia_         306 TLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  344 (344)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             999999995795999999999998799333303321109


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermus thermophilus [TaxId: 274]