RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA
ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str.
psy62]
(360 letters)
>1wdi_A Hypothetical protein TT0907; structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; HET: CIT; 2.10A {Thermus thermophilus} (A:)
Length = 345
Score = 396 bits (1019), Expect = e-111
Identities = 151/361 (41%), Positives = 202/361 (55%), Gaps = 20/361 (5%)
Query: 1 MM-VKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAI 59
M ++ +D+ LPP +IA V PRD ARLMVV+ P ++ V DLP FL D +
Sbjct: 1 MEGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVL 58
Query: 60 VFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119
VFN +KVI A+L + ++ L SP W P++ G L S
Sbjct: 59 VFNESKVIPARLLARK-----PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLS 113
Query: 120 QDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
+ L+A V+ G LL F + ++ G +PLPPYI K P++
Sbjct: 114 PKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEV---GEVPLPPYIKAKIPME--- 167
Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
YQT YA+ GSVAAPTAGLHFT LL RL +G+++ F+TLHVG GTF PVK D +
Sbjct: 168 --RYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPE 224
Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
H MH+E I A+A+N K+ G R+V+VGTT +R LE+A E + G T +F
Sbjct: 225 KHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLF 284
Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
I P Y F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++ YRFYS GD L+
Sbjct: 285 IRPPYTFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 344
Query: 357 F 357
Sbjct: 345 L 345
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
beta-barrel, QUEA, quein queuosine, tRNA- modification;
2.88A {Bacillus subtilis} (A:1-67,A:171-346)
Length = 243
Score = 252 bits (646), Expect = 4e-68
Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
Query: 184 YAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE 243
Y+K GS AAPTAGLHFT +L +L G+++ F+TLHVG GTF PV ++ ++H MH+E
Sbjct: 69 YSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAE 128
Query: 244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET-ATTEDGIINPWSGFTNIFITPGYR 302
+ TA ALN V+ GGRI+SVGTTS R LET A DG SG+T+IFI PGY
Sbjct: 129 FYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYE 188
Query: 303 FRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
F+A+D +++NFHLPKS+L+MLVSA G E + Y HA+ YRF+S+GD L+
Sbjct: 189 FKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLI 242
Score = 88.6 bits (220), Expect = 1e-18
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
V FDF+LP IA P+ RD++RLMV+ + ++D + +F N D +V
Sbjct: 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTGE---LTDSSFKHIISFFNEGDCLV 61
Query: 61 FNNTKVITAQLNG 73
NNT+V+ ++ G
Sbjct: 62 LNNTRVVYSKEIG 74
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
TM0574, structural genomics, JCSG, protein structure
initiative, PSI; 2.00A {Thermotoga maritima}
(A:1-76,A:174-347)
Length = 250
Score = 249 bits (638), Expect = 3e-67
Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 184 YAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE 243
YAK +GSVAAPTAGLHFT L+ +L G++ V LHVG GTF PVKVE+ + H MH E
Sbjct: 78 YAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEE 137
Query: 244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRF 303
+ T + L + RG RIV+VGTT++R LET + G T++FI P + F
Sbjct: 138 FYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEF 196
Query: 304 RAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357
+ VD L++NFHLP+STLLMLV+AF G + + Y+ A+ YRF+S+GD L+
Sbjct: 197 KLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 250
Score = 87.9 bits (218), Expect = 2e-18
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
M V EFD++LPP IA PV PRD++RLMV+H I + ++ +L D +V
Sbjct: 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLV 69
Query: 61 FNNTKVI 67
N +KVI
Sbjct: 70 LNVSKVI 76
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
beta-barrel, QUEA, quein queuosine, tRNA- modification;
2.88A {Bacillus subtilis} (A:68-170)
Length = 103
Score = 76.8 bits (189), Expect = 4e-15
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 67 ITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRL 126
+ A+L G + ++ L + + + W A+P+K +KKG ++ F G RL
Sbjct: 1 LPARLFGTK----EDTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTF----GDGRL 52
Query: 127 EATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182
+A ++ G + F GI E + +G +PLPPYI D YQT
Sbjct: 53 KAICTEELEHGGRKMEFQYDGIFYEV-LESLGEMPLPPYIKE----QLDDKERYQT 103
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
TM0574, structural genomics, JCSG, protein structure
initiative, PSI; 2.00A {Thermotoga maritima} (A:77-173)
Length = 97
Score = 73.3 bits (180), Expect = 4e-14
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 69 AQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEA 128
A+L + + I L R+ W RP + +KKG L L A
Sbjct: 2 ARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDED-----LSA 51
Query: 129 TVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182
+ + G +L F L + G PLPPYI + P++ YQT
Sbjct: 52 VCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RYQT 97
>3icj_A Uncharacterized metal-dependent hydrolase; structural
genomics, amidohydrolase, PSI-2, protein structure
initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB:
3etk_A* 3igh_X* (A:1-96,A:487-534)
Length = 144
Score = 28.4 bits (63), Expect = 1.3
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 223 GAGTFMPVKVEDTDDHIMHSEIGF---IDAPTAQALNSVKSRGGRIVSVGTTS--LRLLE 277
FM VK + + + + R++ G +S LR+ E
Sbjct: 23 KVKNFMGVKHIGDCMKALINGTIYTSFSPVKKVSG---LVISNERVLYAGDSSTALRIAE 79
Query: 278 TATTEDGIINPWSGFTNIFITPGYR-FRAVDILM 310
A E II+ F+ P R FRA I++
Sbjct: 80 LAGGE--IID----LKGKFVMPAERGFRAEYIIL 107
>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT);
plakin repeat,, structural protein; 1.80A {Homo sapiens}
(A:35-161)
Length = 127
Score = 27.2 bits (60), Expect = 3.4
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSG 291
+ IGF + + S R LE G+++P
Sbjct: 51 KAFIGFEGVKGKKKM-SAAEAVKEKWLPYEAGQRFLEFQYLTGGLVDPEVH 100
>2ia9_A Putative septation protein spovg; APC85465, bacillus
subtilis subsp. subtilis STR. 168, structural genomics,
PSI-2; 3.00A {Bacillus subtilis} (A:)
Length = 100
Score = 27.0 bits (60), Expect = 4.0
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 103 ARPSKVIKKG---DILHFFSQDGQSRLEATVIDKWN 135
A PSK G DI H + + +++ V+++++
Sbjct: 49 AXPSKRTPDGEFRDITHPINSSTRGKIQDAVLNEYH 84
>2i9u_A Cytosine/guanine deaminase related protein; protein
structure initiative II (PSI-II), amidohydrolase; HET:
GUN; 2.05A {Clostridium acetobutylicum atcc 824}
(A:1-69,A:374-439)
Length = 135
Score = 25.8 bits (57), Expect = 9.1
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 261 RGGRIVSVGTTSLRLLETATTEDG---IINPWSGFTNIFITPGYRFRAVDILMSNFHLPK 317
G+I SV + + D II P G GY F A+ I SN +
Sbjct: 37 IDGKIASVSSNLPDKYKGNPIIDFRNNIIIP--GMVGS-FEEGYDFDALVINDSNLYPED 93
Query: 318 STLLMLVSAFC 328
L + F
Sbjct: 94 YDLTERLERFI 104
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.138 0.409
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,759,617
Number of extensions: 122491
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 270
Effective length of database: 1,913,599
Effective search space: 516671730
Effective search space used: 516671730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.4 bits)