BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA
ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str.
psy62]
         (360 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 360

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV
Sbjct: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ
Sbjct: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180
           DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY
Sbjct: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180

Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240
           QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM
Sbjct: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240

Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300
           HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG
Sbjct: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300

Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR 360
           YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR
Sbjct: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR 360


>gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 389

 Score = 25.4 bits (54), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 172 IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK 231
           I  R  +  + T    QG VA P    H T N +  LI +  ++  +    G  TF P  
Sbjct: 180 IGRRGSLSGEITIHGKQGHVAYP----HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235

Query: 232 VEDTDDHIMHSEIGFIDAPTAQALN 256
           +E T   + +     I A    + N
Sbjct: 236 MEITTIDVGNPSKNVIPAQVKMSFN 260


>537021.9.peg.888_1 
          Length = 217

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 20/97 (20%)

Query: 212 GIKVYFVTLHVGAGTFMPV-----------KVEDTDDHIMHSEIGFIDAPTAQALNSVKS 260
           G  +YF  L  G  + MP            K++    HI+H E+  +D+  A+ ++   S
Sbjct: 20  GTGLYFRAL-TGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHP--S 76

Query: 261 RGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFI 297
            G RI       L       +   II  W    N FI
Sbjct: 77  DGQRIARALEIKL------VSGQSIIEFWKQAPNPFI 107


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 23.9 bits (50), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 338 QHAISHAYRFYSYGD 352
           + AIS A+ +YSYGD
Sbjct: 164 EFAISMAFLWYSYGD 178


>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 489

 Score = 23.9 bits (50), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)

Query: 191 VAAPTAGLHFTSNLLSRLISIGIKVYF--------VTLHVGAG 225
           + + T  LH   N  SR++S GI   F        V++H GA 
Sbjct: 349 IDSGTKMLHLAKNTTSRIVSKGISAGFSNNTYRGKVSVHRGAA 391


>gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 153

 Score = 23.1 bits (48), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 35 LSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFC---HINRREKEIS 87
          ++ PL IS  L +    FLN   A+V  N KVI   LN + F    H+ R E+ I+
Sbjct: 1  MNSPLRIS--LKAGERIFLNG--AVVRVNNKVILELLNDITFILEHHVIREEEAIT 52


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,873
Number of Sequences: 1233
Number of extensions: 9239
Number of successful extensions: 31
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 8
length of query: 360
length of database: 328,796
effective HSP length: 75
effective length of query: 285
effective length of database: 236,321
effective search space: 67351485
effective search space used: 67351485
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 39 (19.6 bits)