BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] (360 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780180|ref|YP_003064593.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 360 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/360 (100%), Positives = 360/360 (100%) Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV Sbjct: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60 Query: 61 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ Sbjct: 61 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY Sbjct: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180 Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM Sbjct: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG Sbjct: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300 Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR 360 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR Sbjct: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR 360 >gi|254780782|ref|YP_003065195.1| succinyl-diaminopimelate desuccinylase [Candidatus Liberibacter asiaticus str. psy62] Length = 389 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 172 IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK 231 I R + + T QG VA P H T N + LI + ++ + G TF P Sbjct: 180 IGRRGSLSGEITIHGKQGHVAYP----HLTENPIRGLIPLLHQLTNIGFDTGNTTFSPTN 235 Query: 232 VEDTDDHIMHSEIGFIDAPTAQALN 256 +E T + + I A + N Sbjct: 236 MEITTIDVGNPSKNVIPAQVKMSFN 260 >537021.9.peg.888_1 Length = 217 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 20/97 (20%) Query: 212 GIKVYFVTLHVGAGTFMPV-----------KVEDTDDHIMHSEIGFIDAPTAQALNSVKS 260 G +YF L G + MP K++ HI+H E+ +D+ A+ ++ S Sbjct: 20 GTGLYFRAL-TGQLSIMPEIPTAIREKIREKLKQYGSHILHDELSSLDSIVARQIHP--S 76 Query: 261 RGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFI 297 G RI L + II W N FI Sbjct: 77 DGQRIARALEIKL------VSGQSIIEFWKQAPNPFI 107 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust. Identities = 9/15 (60%), Positives = 12/15 (80%) Query: 338 QHAISHAYRFYSYGD 352 + AIS A+ +YSYGD Sbjct: 164 EFAISMAFLWYSYGD 178 >gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%) Query: 191 VAAPTAGLHFTSNLLSRLISIGIKVYF--------VTLHVGAG 225 + + T LH N SR++S GI F V++H GA Sbjct: 349 IDSGTKMLHLAKNTTSRIVSKGISAGFSNNTYRGKVSVHRGAA 391 >gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter asiaticus str. psy62] Length = 153 Score = 23.1 bits (48), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%) Query: 35 LSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFC---HINRREKEIS 87 ++ PL IS L + FLN A+V N KVI LN + F H+ R E+ I+ Sbjct: 1 MNSPLRIS--LKAGERIFLNG--AVVRVNNKVILELLNDITFILEHHVIREEEAIT 52 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.409 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 226,873 Number of Sequences: 1233 Number of extensions: 9239 Number of successful extensions: 31 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 8 length of query: 360 length of database: 328,796 effective HSP length: 75 effective length of query: 285 effective length of database: 236,321 effective search space: 67351485 effective search space used: 67351485 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 39 (19.6 bits)