HHsearch alignment for GI: 254780181 and conserved domain: TIGR01526
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=99.38 E-value=3.2e-13 Score=98.88 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=104.4
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCC---------CCCCCCCCHHHHHHHHHHHHHHHCC-CCCCCC
Q ss_conf 659996589987848999999999974897999645588---------8766578989999999997642013-355441
Q gi|254780181|r 2 MRKAVYTGSFDPITNGHMDIIIQALSFVEDLVIAIGCNS---------VKTKGFLSIQERSELIKQSIFHFIP-DSSNRV 71 (182)
Q Consensus 2 mkigifgGsFdPiH~GHL~ia~~a~~~~D~vii~~~~~p---------~k~~~~~s~e~r~~m~~~a~~~~~~-~~~~~~ 71 (182)
T Consensus 1 k~~G~~fGkF~P~HtGH~~li~~a~s~vDel~ivvg~D~~RD~~lf~D~~a~~~~p~~~R~rwl~e~F~~~~N~i~~~~~ 80 (346)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYKAASKVDELHIVVGSDDVRDLKLFNDSTAAEGPPVEDRLRWLRELFKYQKNVIKIHNL 80 (346)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 90457845558985145999999854268148997277233222200022311789889999998616743266886112
Q ss_pred EEECCCCCCCCCCCCCCCEEEEE------ECCCCCCHHHHH-HHHHHHHHH-CCCCCEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 24203333322100149707999------437652012467-799898764-7998689970685721132699999998
Q gi|254780181|r 72 SVISFEGLAVNLAKDISAQVIVR------GLRDMTDFDYEM-RMTSVNRCL-CPEIATIALFAKESSRYVTSTLIRHLIS 143 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~l-~~~~~~i~l~~~~~~~~ISST~IR~~i~ 143 (182)
T Consensus 81 ne~~~~~~P~GWd~W~~~l~~l~~~~tle~~~p~~vy~~E~~y~A~~~~~L~aDG~~~~~vd~~Rt~~~vsAT~IR~~P~ 160 (346)
T TIGR01526 81 NENGLPEYPNGWDIWSNSLKELLAEKTLERIEPDLVYVSEPEYAAEYKKVLGADGAEFVLVDPDRTFVSVSATQIRENPF 160 (346)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCEEEEECCCCCEEECCHHHHHCCHH
T ss_conf 88878887776678999998998654410146755772560014047862788863699981897145044205321534
Q ss_pred CCCCHHHCCCHHHH
Q ss_conf 59995583999999
Q gi|254780181|r 144 IDADITSFVPDPVC 157 (182)
Q Consensus 144 ~g~~i~~lVP~~V~ 157 (182)
T Consensus 161 --~hW~-hIpr~~r 171 (346)
T TIGR01526 161 --EHWQ-HIPREVR 171 (346)
T ss_pred --HHHH-HCCCEEC
T ss_conf --5130-1472023