HHsearch alignment for GI: 254780181 and conserved domain: cd02064
>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=98.40 E-value=1e-06 Score=60.19 Aligned_cols=141 Identities=17% Similarity=0.117 Sum_probs=67.6
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHC---C-EEEEECCCCCC-------C-CCCCCCHHHHHHHHHHHHHHHCCCCCC--CC
Q ss_conf 965899878489999999999748---9-79996455888-------7-665789899999999976420133554--41
Q gi|254780181|r 6 VYTGSFDPITNGHMDIIIQALSFV---E-DLVIAIGCNSV-------K-TKGFLSIQERSELIKQSIFHFIPDSSN--RV 71 (182)
Q Consensus 6 ifgGsFdPiH~GHL~ia~~a~~~~---D-~vii~~~~~p~-------k-~~~~~s~e~r~~m~~~a~~~~~~~~~~--~~ 71 (182)
T Consensus 2 v~iG~FDGvHlGHq~Li~~~~~~a~~~~~~~~v~tF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~gid~~~~i~F~~~~ 81 (179)
T cd02064 2 VAIGNFDGVHLGHQALIKRAKEIARERGLPSAVLTFEPHPREVLRPEKAPKLLTTLEEKLELLAALGVDYLLVLPFDKEF 81 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 89962654158999999999999998299769999628808971888787025899999999986699999984478888
Q ss_pred EEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEC-CCCCCCCCHHHHHHHHHCCC
Q ss_conf 2420333332210014970799943765201246779989876479-986899706-85721132699999998599
Q gi|254780181|r 72 SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFA-KESSRYVTSTLIRHLISIDA 146 (182)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~-~~~~~~ISST~IR~~i~~g~ 146 (182)
T Consensus 82 ~~ls~~~Fi~~~l~~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~~~~~~~~~ISSs~IR~~i~~G~ 158 (179)
T cd02064 82 ASLSAEEFVKDLLVKLNAKHVVVGFDFRFGKGRSGNAELLRELGEKYGFEVEIVPPVTIDGEKVSSTRIREALAEGD 158 (179)
T ss_pred HCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEECCCEEEHHHHHHHHHCCC
T ss_conf 63999999998741479639997773025789887999999999872964999376960891673899999998599