HHsearch alignment for GI: 254780181 and conserved domain: cd02064

>cd02064 Flavokinase_C Riboflavin kinase (Flavokinase). This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein riboflavin kinase / FAD synthetase. These enzymes have both ATP:riboflavin. 5'-phospho transferase and ATP:FMN-adenylyltransferase activities . The C-terminal domain has FMN-adenylyltransferase activitie. They catalyse the 5'-phosphorylation of riboflavin to FMN and the adenylylation of FMN to FAD . A domain has been identified in the N-terminal region that is well conserved in all the bacterial FAD synthetases.This domain has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases .
Probab=98.40  E-value=1e-06  Score=60.19  Aligned_cols=141  Identities=17%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHC---C-EEEEECCCCCC-------C-CCCCCCHHHHHHHHHHHHHHHCCCCCC--CC
Q ss_conf             965899878489999999999748---9-79996455888-------7-665789899999999976420133554--41
Q gi|254780181|r    6 VYTGSFDPITNGHMDIIIQALSFV---E-DLVIAIGCNSV-------K-TKGFLSIQERSELIKQSIFHFIPDSSN--RV   71 (182)
Q Consensus         6 ifgGsFdPiH~GHL~ia~~a~~~~---D-~vii~~~~~p~-------k-~~~~~s~e~r~~m~~~a~~~~~~~~~~--~~   71 (182)
T Consensus         2 v~iG~FDGvHlGHq~Li~~~~~~a~~~~~~~~v~tF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~gid~~~~i~F~~~~   81 (179)
T cd02064           2 VAIGNFDGVHLGHQALIKRAKEIARERGLPSAVLTFEPHPREVLRPEKAPKLLTTLEEKLELLAALGVDYLLVLPFDKEF   81 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             89962654158999999999999998299769999628808971888787025899999999986699999984478888


Q ss_pred             EEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEC-CCCCCCCCHHHHHHHHHCCC
Q ss_conf             2420333332210014970799943765201246779989876479-986899706-85721132699999998599
Q gi|254780181|r   72 SVISFEGLAVNLAKDISAQVIVRGLRDMTDFDYEMRMTSVNRCLCP-EIATIALFA-KESSRYVTSTLIRHLISIDA  146 (182)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~i~l~~-~~~~~~ISST~IR~~i~~g~  146 (182)
T Consensus        82 ~~ls~~~Fi~~~l~~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~~~~~~v~~i~~~~~~~~~ISSs~IR~~i~~G~  158 (179)
T cd02064          82 ASLSAEEFVKDLLVKLNAKHVVVGFDFRFGKGRSGNAELLRELGEKYGFEVEIVPPVTIDGEKVSSTRIREALAEGD  158 (179)
T ss_pred             HCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCEEEEECCEEECCCEEEHHHHHHHHHCCC
T ss_conf             63999999998741479639997773025789887999999999872964999376960891673899999998599